View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441_low_35 (Length: 368)

Name: NF1441_low_35
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441_low_35
NF1441_low_35
[»] chr6 (5 HSPs)
chr6 (205-368)||(26840214-26840382)
chr6 (205-366)||(26840647-26840813)
chr6 (40-87)||(20910754-20910801)
chr6 (40-87)||(20925202-20925249)
chr6 (26-87)||(31661144-31661206)
[»] chr5 (2 HSPs)
chr5 (1-86)||(6702063-6702149)
chr5 (174-207)||(39343552-39343585)
[»] scaffold0192 (1 HSPs)
scaffold0192 (14-87)||(19122-19195)
[»] chr3 (3 HSPs)
chr3 (1-77)||(15993035-15993111)
chr3 (174-202)||(18201754-18201782)
chr3 (174-202)||(18201828-18201856)
[»] chr8 (4 HSPs)
chr8 (26-87)||(45239362-45239424)
chr8 (174-223)||(27016355-27016404)
chr8 (174-209)||(18291087-18291122)
chr8 (26-87)||(42319911-42319973)
[»] chr4 (2 HSPs)
chr4 (1-87)||(2304252-2304339)
chr4 (26-87)||(16030590-16030652)
[»] scaffold0521 (1 HSPs)
scaffold0521 (174-209)||(5232-5267)
[»] chr2 (1 HSPs)
chr2 (21-87)||(6673889-6673956)
[»] chr1 (2 HSPs)
chr1 (17-87)||(51382510-51382581)
chr1 (174-207)||(4009396-4009429)
[»] chr7 (1 HSPs)
chr7 (174-207)||(35345004-35345037)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 205 - 368
Target Start/End: Original strand, 26840214 - 26840382
Alignment:
Q  205 gataccacctcatcatcggtttccttttcatttcctccctcctctcattgaccgaacatgacacgccggcgacaacacctacatctcgt-----ctctgt 299  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |     ||||||    
T  26840214 gataccacttcatcatcagtttccttttcatttcctccctcctctcatcgaccgaacatgactcgccggcgacaacacctacatctcctctttcctctgt 26840313  T
Q  300 caccaccaaatacaattccgtcttcgacccaatttcaccatcgcatcccgtcgaggttcgaagattcca 368  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  26840314 caccaccaaatacaactccgtcttcgacccaatttcaccttcgcattccgtcgaggttcgaagattcca 26840382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 205 - 366
Target Start/End: Original strand, 26840647 - 26840813
Alignment:
Q  205 gataccacctcatcatcggtttccttttcatttcctccctcctctcattgaccgaacatgacacgccggcgacaacacctacatctcgt-----ctctgt 299  Q
    |||||||| | |||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |     ||||||    
T  26840647 gataccactttatcatcagtttccttttcatttcctccctcctctcatcgaccgaacatgactcgccggcgacaacacctacatctcctctctcctctgt 26840746  T
Q  300 caccaccaaatacaattccgtcttcgacccaatttcaccatcgcatcccgtcgaggttcgaagattc 366  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26840747 caccaccaaatacaactccgtcttcgacccaatttcaccgtcgcatcccgtcgaggttcgaagattc 26840813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 20910801 - 20910754
Alignment:
Q  40 attattcctgctcataaaatccgtgcggcgcacgggtcggcgttctag 87  Q
    |||||||| |||||||| | ||||||||||||||||||||||||||||    
T  20910801 attattccggctcataagacccgtgcggcgcacgggtcggcgttctag 20910754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 20925249 - 20925202
Alignment:
Q  40 attattcctgctcataaaatccgtgcggcgcacgggtcggcgttctag 87  Q
    |||||||| |||||||| | ||||||||||||||||||||||||||||    
T  20925249 attattccggctcataagacccgtgcggcgcacgggtcggcgttctag 20925202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 31661206 - 31661144
Alignment:
Q  26 tttattgtgtatcaa-ttattcctgctcataaaatccgtgcggcgcacgggtcggcgttctag 87  Q
    ||||||||||||||| ||||||| |||||||| | | |||||||||||||||| |||||||||    
T  31661206 tttattgtgtatcaaattattccggctcataagacctgtgcggcgcacgggtccgcgttctag 31661144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 6702063 - 6702149
Alignment:
Q  1 taaattccatttcaacatattttggtttattgtgtatc-aattattcctgctcataaaatccgtgcggcgcacgggtcggcgttcta 86  Q
    ||||||||||| |||||||||| | ||||||||||||| ||||||||  |||||||| | |||||||| ||||||||||||||||||    
T  6702063 taaattccattccaacatatttcgttttattgtgtatcaaattattctggctcataagacccgtgcggtgcacgggtcggcgttcta 6702149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 39343552 - 39343585
Alignment:
Q  174 ctcacacctctctcccttttctctcacacccgat 207  Q
    ||||||| ||||||||||||||||||||||||||    
T  39343552 ctcacacatctctcccttttctctcacacccgat 39343585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 19195 - 19122
Alignment:
Q  14 aacatattttggtttattgtgtatcaattattcctgctcataaaatccgtgcggcgcacgggtcggcgttctag 87  Q
    ||||||||||| |||||||||||| | ||||||| |||||||| | ||||||||||||||| ||||||||||||    
T  19195 aacatattttgttttattgtgtattagttattccggctcataagacccgtgcggcgcacggatcggcgttctag 19122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 15993111 - 15993035
Alignment:
Q  1 taaattccatttcaacatattttggtttattgtgtatcaattattcctgctcataaaatccgtgcggcgcacgggtc 77  Q
    ||||||||||| ||||||||||   |||||||||||||||||||||| | |||||| | ||||||||||||||||||    
T  15993111 taaattccattccaacatatttccttttattgtgtatcaattattccggttcataagacccgtgcggcgcacgggtc 15993035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 202
Target Start/End: Original strand, 18201754 - 18201782
Alignment:
Q  174 ctcacacctctctcccttttctctcacac 202  Q
    |||||||||||||||||||||||||||||    
T  18201754 ctcacacctctctcccttttctctcacac 18201782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 202
Target Start/End: Original strand, 18201828 - 18201856
Alignment:
Q  174 ctcacacctctctcccttttctctcacac 202  Q
    |||||||||||||||||||||||||||||    
T  18201828 ctcacacctctctcccttttctctcacac 18201856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 45239424 - 45239362
Alignment:
Q  26 tttattgtgtatcaatt-attcctgctcataaaatccgtgcggcgcacgggtcggcgttctag 87  Q
    ||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||||||||||    
T  45239424 tttattgtgtatcaatttattccggctcataagacccgtgcggcgcacgggtcggcgttctag 45239362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 27016355 - 27016404
Alignment:
Q  174 ctcacacctctctcccttttctctcacacccgataccacctcatcatcgg 223  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  27016355 ctcacacctctctcctttttctctcacacccgataccacttcatcatcgg 27016404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 18291122 - 18291087
Alignment:
Q  174 ctcacacctctctcccttttctctcacacccgatac 209  Q
    ||||||||||||||||||||||||||||||||||||    
T  18291122 ctcacacctctctcccttttctctcacacccgatac 18291087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 42319911 - 42319973
Alignment:
Q  26 tttattgtgtatcaa-ttattcctgctcataaaatccgtgcggcgcacgggtcggcgttctag 87  Q
    ||||||||||||||| ||||||| |||||||| |   |||||||||||||||| |||||||||    
T  42319911 tttattgtgtatcaaattattccggctcataagacttgtgcggcgcacgggtccgcgttctag 42319973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 2304252 - 2304339
Alignment:
Q  1 taaattccatttcaacatattttggtttattgtgtatcaa-ttattcctgctcataaaatccgtgcggcgcacgggtcggcgttctag 87  Q
    |||||||||||| ||||||||| | |||||||| |||||| |||||   |||||||| | || |||||||||||||||||||||||||    
T  2304252 taaattccattttaacatatttcgttttattgtttatcaaattattttggctcataagacccatgcggcgcacgggtcggcgttctag 2304339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 16030652 - 16030590
Alignment:
Q  26 tttattgtgtatcaa-ttattcctgctcataaaatccgtgcggcgcacgggtcggcgttctag 87  Q
    ||||||||||||||| ||||||  |||||||| | |||||||||||||||||||| |||||||    
T  16030652 tttattgtgtatcaaattattcgagctcataagacccgtgcggcgcacgggtcggtgttctag 16030590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0521 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0521
Description:

Target: scaffold0521; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 5267 - 5232
Alignment:
Q  174 ctcacacctctctcccttttctctcacacccgatac 209  Q
    ||||||||||||||||||||||||||||||||||||    
T  5267 ctcacacctctctcccttttctctcacacccgatac 5232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 6673889 - 6673956
Alignment:
Q  21 tttggtttattgtgtatcaa-ttattcctgctcataaaatccgtgcggcgcacgggtcggcgttctag 87  Q
    |||| ||||||||||| ||| |||||| ||||||||| | ||||||||||||||||||||| ||||||    
T  6673889 tttgttttattgtgtaccaaattattcttgctcataagacccgtgcggcgcacgggtcggccttctag 6673956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 51382581 - 51382510
Alignment:
Q  17 atattttggtttattgtgtatcaa-ttattcctgctcataaaatccgtgcggcgcacgggtcggcgttctag 87  Q
    |||||| | ||||| ||||||||| ||||||| |||||||| | |||||||||||| |||||||||||||||    
T  51382581 atatttcgttttatcgtgtatcaaattattccggctcataagacccgtgcggcgcatgggtcggcgttctag 51382510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 4009396 - 4009429
Alignment:
Q  174 ctcacacctctctcccttttctctcacacccgat 207  Q
    ||||||| ||||||||||||||||||||||||||    
T  4009396 ctcacacatctctcccttttctctcacacccgat 4009429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 35345004 - 35345037
Alignment:
Q  174 ctcacacctctctcccttttctctcacacccgat 207  Q
    ||||||| ||||||||||||||||||||||||||    
T  35345004 ctcacacatctctcccttttctctcacacccgat 35345037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University