View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1441_low_4 (Length: 600)
Name: NF1441_low_4
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 89 - 570
Target Start/End: Complemental strand, 330526 - 330047
Alignment:
| Q |
89 |
attatctctcatctcatgtatatggtctatatatcaaatacatttatttattattcaatgaatttaaaatatgannnnnnnnnncttatatatgagatga |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
330526 |
attatctctcatctcatgtatatggtctatatatcaaatacatttatttattattcaatgaatttaaaatatgatttttttt--catatatatgagatga |
330429 |
T |
|
| Q |
189 |
gaccgggtgaagtaagatagaaacaaatatatttggcgtcgtcgcatatggtgtcagtaatttgttaagagttaagcccgtgagcccaaaccaaaaacta |
288 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
330428 |
gaccggatgaagtaagatagaaacaaatatattaggcgtcgtcgcatatgatgtcagtaatttgttaagagttaagcccgtgagcccaaatcaaaaacta |
330329 |
T |
|
| Q |
289 |
gttcattaggtaggagagcctcgtggcttaagtgctcttaggttgcaatcaaggtcacactaacttcatgtgttttaaatacttaagatttgaaacaaat |
388 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
330328 |
gctcattaggtaggagagcctcgtggcttaagtgctcttaggttgcaatcaaggccacactaacttcatgtgttttaaatacttaagatttgaaacaaat |
330229 |
T |
|
| Q |
389 |
actaaacaagcaaacaaaatccaatacttatgattctcatcaaaagaaatgtgtttatagatgcatacagttacaaatagaacaatttctcctatcaaat |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
330228 |
actaaacaagcaaacaaaatccaatacttatgattctcatcaaaagaaatgtgtttatagatgcatacagttacaaatagaacaatttctcccatcaaat |
330129 |
T |
|
| Q |
489 |
tgaaattttgcacattccattgttggtaattcttaatattttatgtaaaatagcaaaatacagagacttgcaatctattggt |
570 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
330128 |
tgaaattttgcacattccattactggtaattcttaatattttatgtaaaatagtaaaatacagagacttgcaatctattggt |
330047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 37223635 - 37223591
Alignment:
| Q |
277 |
aaccaaaaactagttcattaggtaggagagcctcgtggcttaagt |
321 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| |||||||||| |
|
|
| T |
37223635 |
aaccaaaaactagtccattaggtgggagagcctaatggcttaagt |
37223591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University