View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_40 (Length: 353)
Name: NF1441_low_40
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 133 - 344
Target Start/End: Complemental strand, 29966825 - 29966613
Alignment:
| Q |
133 |
gacacgtttgaagatgacttttccaccttacaatttgccacattaattaatcactcacatacgcacacacac--tcatctcttataaatccccacacatt |
230 |
Q |
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| T |
29966825 |
gacacgtttgaagatgacttttccaccttacaatttgccacattaattaatcactcgcatacgcacacacacactcctctcttataaattcccacacatt |
29966726 |
T |
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| Q |
231 |
ctctcccaaattcccaacacttctttgcaagttgcaactataaattctcatacattctctcccaaattctcaacacctcttagcaggtttgcaactcata |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||| |
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| T |
29966725 |
ctctcccaaattcccaacacttctttgcaagttgcaactataaattctcatacattctctcccaaattctcaacatctctttgca-aattgcaactcata |
29966627 |
T |
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| Q |
331 |
caatcacaagttag |
344 |
Q |
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|||||||||||||| |
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| T |
29966626 |
caatcacaagttag |
29966613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 29966943 - 29966889
Alignment:
| Q |
14 |
gaattacacacgcaagcatgcactacatgagctttgaccaacacaagcaaaaacc |
68 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29966943 |
gaattacacacgcaagcatgcactacatgagctttgaccaacacaagcaaaaacc |
29966889 |
T |
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