View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_42 (Length: 349)
Name: NF1441_low_42
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 194 - 343
Target Start/End: Complemental strand, 45153015 - 45152866
Alignment:
| Q |
194 |
cttaaggtgtgacccattttacctatatctatatggatattgtggacagtggccttttcctacttaccgttcaccaaacaatccatttgatcaaacacca |
293 |
Q |
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| T |
45153015 |
cttaaggtgtgacccattttacctatatctatatggatattgtggacagtggccttttcctacttaccgttcaccaaacaatccatttgatcaaacacca |
45152916 |
T |
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| Q |
294 |
cccccctttcgttcctttccacgccccccacgacttatccctccaccttt |
343 |
Q |
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| T |
45152915 |
cccccctttcgttactttccacgccccccacgacttatccctccaccttt |
45152866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 45153206 - 45153088
Alignment:
| Q |
3 |
gagtgagatgaagaaatggattcaaacaaagtactaatagctctactaacccttgttttgctctttcattactctcttactgaaagtacaacactttctc |
102 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45153206 |
gagtgaaacgaagaaatggattcaaacaaagtactaatagctctactaacccttgttttgctctttcattactctcttactgaaagtacaacactttctc |
45153107 |
T |
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| Q |
103 |
ataaccatcatagacacct |
121 |
Q |
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||||||||||||||||||| |
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| T |
45153106 |
ataaccatcatagacacct |
45153088 |
T |
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