View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_44 (Length: 348)
Name: NF1441_low_44
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 23231262 - 23231568
Alignment:
| Q |
1 |
taatcctgaaatatatatcaacaataatcgatagatataaacatcagaagtgaaaaatgtaggnnnnnnnnttagttattgttgttattattattgaaaa |
100 |
Q |
| |
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| T |
23231262 |
taatcctgaaatatatatcaacaataatcgatagatataaacatcaaaagtaaaaactgtagaaataaaaattagttattgttgttattattattgaaaa |
23231361 |
T |
|
| Q |
101 |
tattggtttaagtgtatttttgtgtgtatttctaaaaatgagttggatttgtagttgtgaccatataaaaacataataaacatgatgagaagatgtatat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
23231362 |
tattggtttaagtgtatttttgtgtgtatttctaaaaatgagttggatttgtagttgtgaccatataaaaacataataaacatgaggagaagatgtatat |
23231461 |
T |
|
| Q |
201 |
gtaccaagatcaatgatttgatatgacttctagtaaaattgacttcaaggtctttctcctcaaagacattaagcaaaatgtcaagaaaatctttgagtct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23231462 |
gtaccaagatcaatgatttgatatgacttctagtaaaattgacttcaaggtctttctcctcaaagacattaagcaaaatgtcaagaaaatctttcagtct |
23231561 |
T |
|
| Q |
301 |
ctcttct |
307 |
Q |
| |
|
||||||| |
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| T |
23231562 |
ctcttct |
23231568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 202 - 307
Target Start/End: Complemental strand, 48602564 - 48602459
Alignment:
| Q |
202 |
taccaagatcaatgatttgatatgacttctagtaaaattgacttcaaggtctttctcctcaaagacattaagcaaaatgtcaagaaaatctttgagtctc |
301 |
Q |
| |
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|||||| || ||||||||||||||| |||||||||| ||||||||| |||||||||| |||||| ||||||||||||||||||||||| |||||| |
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| T |
48602564 |
taccaatattaatgatttgatatgatttctagtaaagttgacttcacggtctttctcactgtagacatctagcaaaatgtcaagaaaatctttcagtctc |
48602465 |
T |
|
| Q |
302 |
tcttct |
307 |
Q |
| |
|
|||||| |
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|
| T |
48602464 |
tcttct |
48602459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 307
Target Start/End: Complemental strand, 48592889 - 48592764
Alignment:
| Q |
182 |
atgatgagaagatgtatatgtaccaagatcaatgatttgatatgacttctagtaaaattgacttcaaggtctttctcctcaaagacattaagcaaaatgt |
281 |
Q |
| |
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|||| |||||| | |||| ||||||| || ||||||||||||||| |||||||||| ||||||||| || |||||| |||||| |||||||||| |
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| T |
48592889 |
atgaggagaagttatatacgtaccaatattaatgatttgatatgatttctagtaaagttgacttcacagtttttctcactgtagacatctagcaaaatgt |
48592790 |
T |
|
| Q |
282 |
caagaaaatctttgagtctctcttct |
307 |
Q |
| |
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||||||||||||| |||||||||||| |
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|
| T |
48592789 |
caagaaaatctttcagtctctcttct |
48592764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 39413453 - 39413498
Alignment:
| Q |
82 |
ttgttattattattgaaaatattggtttaagtgtatttttgtgtgt |
127 |
Q |
| |
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||||||||||||||||||| ||||||| | ||||||| |||||||| |
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|
| T |
39413453 |
ttgttattattattgaaaacattggttaatgtgtattgttgtgtgt |
39413498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 29139494 - 29139539
Alignment:
| Q |
82 |
ttgttattattattgaaaatattggtttaagtgtatttttgtgtgt |
127 |
Q |
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||||||||||||||||||||||| ||| | ||||||| |||||||| |
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|
| T |
29139494 |
ttgttattattattgaaaatattagttaatgtgtattgttgtgtgt |
29139539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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