View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_45 (Length: 341)
Name: NF1441_low_45
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 10378616 - 10378844
Alignment:
| Q |
18 |
tacatatccgttgaacttcaaaattgttcatatatttttagtttataaacttctcgctactggttaatagctttacatatgttaattatatattacaaga |
117 |
Q |
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| T |
10378616 |
tacatatccgttgaacttcaaaattgttcatatatttttagtttataaacttctcgctactggttaatagctttacatatcttaattatatattacagga |
10378715 |
T |
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| Q |
118 |
gaaaaacgatcatttttctactctttttattacactaatacttgtaaattatgaacggtgttatatatgtatatataattcaaaatttaatgtctatttt |
217 |
Q |
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| T |
10378716 |
gaaaaacgatcatttttctgctttttttattacactaatacttgtaaattatgaacggtgttatatatgtatatataattcaaaatttaatgtctatttt |
10378815 |
T |
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| Q |
218 |
tttctaaattgttttaagaaccttattta |
246 |
Q |
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| T |
10378816 |
tttctaaattgttttaagaaccttattta |
10378844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 276 - 338
Target Start/End: Original strand, 10378872 - 10378934
Alignment:
| Q |
276 |
aaatatagcacgtgcaacaatttttaccaccctcttttctccattgggtgcctttgctactcc |
338 |
Q |
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| T |
10378872 |
aaatatagaacgtgtaacaatttttaccaccctcttttctccatcgggtgtctttgatactcc |
10378934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 31383650 - 31383605
Alignment:
| Q |
141 |
tttttattacactaatacttgtaaattatgaacggtgttatatatg |
186 |
Q |
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| T |
31383650 |
tttttattgcactaatacatgtaaattatgaacggtattttatatg |
31383605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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