View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1441_low_47 (Length: 334)
Name: NF1441_low_47
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_47 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
| [»] chr5 (6 HSPs) |
| |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] scaffold1961 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 14653073 - 14652740
Alignment:
| Q |
1 |
ctccttctcgatctcattaataattttcttttcagtcttagggtccaagtaatgaactctatccgtttcctcattcaggcatctctcaactttcttgaga |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14653073 |
ctccttctcgatcgcattaataattttcttttcagtcttagggtccaagtaatgaactctatccgtttcctcattcaggcatctctcaactttcttgaga |
14652974 |
T |
|
| Q |
101 |
taatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14652973 |
taatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaa |
14652874 |
T |
|
| Q |
201 |
cagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctccttgaatacaaactccaaaagcgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14652873 |
cagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctccttaaatacaaactccaaaagcgt |
14652774 |
T |
|
| Q |
301 |
attcgacagttgagtccttatctggtttgaataa |
334 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||| |
|
|
| T |
14652773 |
attcgacaatcgagtccttatctggtttgaataa |
14652740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 14661508 - 14661175
Alignment:
| Q |
1 |
ctccttctcgatctcattaataattttcttttcagtcttagggtccaagtaatgaactctatccgtttcctcattcaggcatctctcaactttcttgaga |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
14661508 |
ctccttctcgatcgcattaataattttcttttcagtcttagggtccaagtaatgaattctatccgtttcctcagtcaggcacctctcaactttcttgaga |
14661409 |
T |
|
| Q |
101 |
taatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaa |
200 |
Q |
| |
|
|||||| | |||||| | |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14661408 |
taatcctcgcagtcacagcactcaatatatttctcagattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaattcttgctcataaa |
14661309 |
T |
|
| Q |
201 |
cagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctccttgaatacaaactccaaaagcgt |
300 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14661308 |
cagaaggacctaaatcaattagcatctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctccttgaatacaaactccaaaagcgt |
14661209 |
T |
|
| Q |
301 |
attcgacagttgagtccttatctggtttgaataa |
334 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
14661208 |
attcgacagtcgagtccttatctggtttgaataa |
14661175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 124 - 334
Target Start/End: Complemental strand, 14627533 - 14627323
Alignment:
| Q |
124 |
aatatatttctgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagc |
223 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
14627533 |
aatatatttatgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatcaattagc |
14627434 |
T |
|
| Q |
224 |
atctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctccttgaatacaaactccaaaagcgtattcgacagttgagtccttatct |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| | || ||||||||| |
|
|
| T |
14627433 |
atctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctctttaaatacaaactccaaaagcgtattcgacaatcgattccttatct |
14627334 |
T |
|
| Q |
324 |
ggtttgaataa |
334 |
Q |
| |
|
||||||||||| |
|
|
| T |
14627333 |
ggtttgaataa |
14627323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 14757910 - 14758242
Alignment:
| Q |
1 |
ctccttctcgatctcattaataattttcttttcagtcttagggtccaagtaatga---actctatccgtttcctcattcaggcatctctcaactttcttg |
97 |
Q |
| |
|
||||||||||||| || || |||| ||||||||||| ||||||| ||||| || | |||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
14757910 |
ctccttctcgatcacactagtaatcttcttttcagtgctagggtctaagtagtggcacattctatctgtttcctcattcaggcacctctcaactttcttg |
14758009 |
T |
|
| Q |
98 |
agataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcat |
197 |
Q |
| |
|
|||||||| || || ||| | |||| ||| ||||||| ||||||||| |||| | |||||| ||||||| ||||| | |||||| ||| ||||||| | |
|
|
| T |
14758010 |
agataatcaccgcaatcacagcactcgataaatttctgagattcagccctgtagaactcagctgaaacttgtagaaacgaagtctcgaattcttgctctt |
14758109 |
T |
|
| Q |
198 |
aaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctccttgaatacaaactccaaaag |
297 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||| |||| ||||||||||| | |||||||||||||| ||||| |||||| |||| || |||||||| |
|
|
| T |
14758110 |
aaacagaagaacctaaatccattagcatctttgtaatatttttaatcagttctatattaacatcttccccagcacgttccttgcatactaattccaaaag |
14758209 |
T |
|
| Q |
298 |
cgtattcgacagttgagtccttatctggtttga |
330 |
Q |
| |
|
| ||||||||||| ||||||| ||||| ||||| |
|
|
| T |
14758210 |
catattcgacagtcgagtcctgatctgttttga |
14758242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 58 - 334
Target Start/End: Original strand, 14750048 - 14750324
Alignment:
| Q |
58 |
tctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattca |
157 |
Q |
| |
|
|||||| |||||||||||||| | | |||||||||||| |||||| || || ||| || | | || | ||||||||||||||||| | || | ||| |
|
|
| T |
14750048 |
tctatctgtttcctcattcagccgctttgcaactttcttgaaataatcaccgcaatcagaaaaatcaacaaatttctgggattcagccctatagaactca |
14750147 |
T |
|
| Q |
158 |
gctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaa |
257 |
Q |
| |
|
||| ||||||| | |||||||||||||||| ||| |||||||||| | |||||||||||||| |||||||||| | |||||||||| ||||||| |||| |
|
|
| T |
14750148 |
gctgaaacttgtaaaaaaggagtctcaaattcttcctcataaacaaagggacctaaatccattagcatctttgatagatttctaatcggttctctattaa |
14750247 |
T |
|
| Q |
258 |
catcttccccggcacgctccttgaatacaaactccaaaagcgtattcgacagttgagtccttatctggtttgaataa |
334 |
Q |
| |
|
|||||||| | ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14750248 |
catcttccgcagcatgctccttgaatacaaactccaaaagcgtattcgacagtcgagtccttatctggtttgaataa |
14750324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 168 - 332
Target Start/End: Original strand, 14765240 - 14765404
Alignment:
| Q |
168 |
gcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaacatcttcccc |
267 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||||| ||||||||| ||| || ||||||||||| | | ||||||||||| |||| |||||| |||| || |
|
|
| T |
14765240 |
gcagaaaaggattctcaaattcttcctcataaacggaaggacctgtatcaattagcatctttgttatacttctaatcagtcctctattaacaacttcgcc |
14765339 |
T |
|
| Q |
268 |
ggcacgctccttgaatacaaactccaaaagcgtattcgacagttgagtccttatctggtttgaat |
332 |
Q |
| |
|
||||||||| || ||| || ||||||||| ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
14765340 |
ggcacgctcactgtgtactaattccaaaagcatattcaacagtcgagtccttatctggtttgaat |
14765404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 17690679 - 17691012
Alignment:
| Q |
1 |
ctccttctcgatctcattaataattttcttttcagtcttagggtccaagtaatgaactctatccgtttcctcattcaggcatctctcaactttcttgaga |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
17690679 |
ctccttctcgatcgcattaataattttcttttcagtcttagggtccaagtaatgaactctatccgtttcctcattcaagcacctctcaactttcttgaga |
17690778 |
T |
|
| Q |
101 |
taatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17690779 |
taatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaa |
17690878 |
T |
|
| Q |
201 |
cagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctccttgaatacaaactccaaaagcgt |
300 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
17690879 |
cagaaggacctaaatcaattagcatctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctccttgaatacaaactccaaaagcat |
17690978 |
T |
|
| Q |
301 |
attcgacagttgagtccttatctggtttgaataa |
334 |
Q |
| |
|
|||||||| | || |||||||||||||||||||| |
|
|
| T |
17690979 |
attcgacaatcgattccttatctggtttgaataa |
17691012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 17683753 - 17684086
Alignment:
| Q |
1 |
ctccttctcgatctcattaataattttcttttcagtcttagggtccaagtaatgaactctatccgtttcctcattcaggcatctctcaactttcttgaga |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17683753 |
ctccttctcgatcgcattaataattttcttttcagtcttagggtccaagtaatgaattctatccgtttcctcattcaggcacctctcaactttcttgaga |
17683852 |
T |
|
| Q |
101 |
taatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaa |
200 |
Q |
| |
|
|||||||| |||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17683853 |
taatccccgcagtcacaacactcgatatatttctcggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaattcttgctcataaa |
17683952 |
T |
|
| Q |
201 |
cagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctccttgaatacaaactccaaaagcgt |
300 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
17683953 |
cagaaggacctaaatcaattagcatctttgtaacatttctaatcagttctctgttaacatcttccccggcacactccttaaatacaaactccaaaagcgt |
17684052 |
T |
|
| Q |
301 |
attcgacagttgagtccttatctggtttgaataa |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
17684053 |
attcgacagttgagtccttatctggtttgaataa |
17684086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 124 - 334
Target Start/End: Original strand, 17701960 - 17702170
Alignment:
| Q |
124 |
aatatatttctgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagc |
223 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
17701960 |
aatatatttatgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatcaattagc |
17702059 |
T |
|
| Q |
224 |
atctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctccttgaatacaaactccaaaagcgtattcgacagttgagtccttatct |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17702060 |
atctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctctttaagtacaaactccaaaagcgtattcgacagtcgagtccttatct |
17702159 |
T |
|
| Q |
324 |
ggtttgaataa |
334 |
Q |
| |
|
||||||||||| |
|
|
| T |
17702160 |
ggtttgaataa |
17702170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 17570625 - 17570293
Alignment:
| Q |
1 |
ctccttctcgatctcattaataattttcttttcagtcttagggtccaagtaatga---actctatccgtttcctcattcaggcatctctcaactttcttg |
97 |
Q |
| |
|
||||||||||||| || || |||| ||||||||||| ||||||||||||| || | |||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
17570625 |
ctccttctcgatcacactagtaatcttcttttcagtgctagggtccaagtagtggcacattctatctgtttcctcattcaggcacctctcaactttcttg |
17570526 |
T |
|
| Q |
98 |
agataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcat |
197 |
Q |
| |
|
|||||||| || || ||| | |||| ||| ||||||| ||||||||| |||| | |||||| ||||||| ||||| | |||||| ||| ||||||||| |
|
|
| T |
17570525 |
agataatcaccgcaatcacagcactcgataaatttctgagattcagccctgtagaactcagctgaaacttgtagaaacgaagtctcgaattcttgctcat |
17570426 |
T |
|
| Q |
198 |
aaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaacatcttccccggcacgctccttgaatacaaactccaaaag |
297 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||| |||| ||||||||||| | |||||||||||||| ||||| |||||| |||| || |||||||| |
|
|
| T |
17570425 |
aaacagaagaacctaaatccattagcatctttgtaatatttttaatcagttctatattaacatcttccccagcacgttccttgcatactaattccaaaag |
17570326 |
T |
|
| Q |
298 |
cgtattcgacagttgagtccttatctggtttga |
330 |
Q |
| |
|
| ||||||||||| ||||||| ||||| ||||| |
|
|
| T |
17570325 |
catattcgacagtcgagtcctgatctgttttga |
17570293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 168 - 332
Target Start/End: Complemental strand, 17563359 - 17563195
Alignment:
| Q |
168 |
gcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaacatcttcccc |
267 |
Q |
| |
|
||||||||||| |||||||| ||| | ||||||| ||||||||| ||| || ||||||||||| | | ||||||||||| |||| |||||| |||| || |
|
|
| T |
17563359 |
gcagaaaaggattctcaaattcttccccataaacggaaggacctgtatcaattagcatctttgttatacttctaatcagtcctctattaacaacttcgcc |
17563260 |
T |
|
| Q |
268 |
ggcacgctccttgaatacaaactccaaaagcgtattcgacagttgagtccttatctggtttgaat |
332 |
Q |
| |
|
||||||||| || ||| || ||||||||| ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
17563259 |
ggcacgctcactgcgtactaattccaaaagcatattcaacagtcgagtccttatctggtttgaat |
17563195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 17622017 - 17622081
Alignment:
| Q |
56 |
actctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtcaaaaca |
120 |
Q |
| |
|
||||||||| |||||||||||| | |||||| |||||||||||||||||||||| ||| |||| |
|
|
| T |
17622017 |
actctatccaattcctcattcagccgcctctcagctttcttgagataatccccacaatcacaaca |
17622081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 56 - 334
Target Start/End: Original strand, 15195574 - 15195852
Alignment:
| Q |
56 |
actctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagatt |
155 |
Q |
| |
|
|||||||| || |||||||||||| ||||| | |||||||||||||||||||| ||| | |||| |||| ||||||| ||||||||| ||| | | |
|
|
| T |
15195574 |
actctatcaattacctcattcaggcgcatctcagccttcttgagataatccccacaatcacagcactcaataaatttctgtgattcagcccggtagaact |
15195673 |
T |
|
| Q |
156 |
cagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgtt |
255 |
Q |
| |
|
| ||| || |||||||||||| |||||||| ||||| ||||||| ||||| ||||||||||| ||||| ||||| | ||||||||||| || | |||| |
|
|
| T |
15195674 |
cggctggaagctgcagaaaaggattctcaaattcttgcacataaacggaaggtcctaaatccattagcatatttgttatatttctaatcacttttatgtt |
15195773 |
T |
|
| Q |
256 |
aacatcttccccggcacgctccttgaatacaaactccaaaagcgtattcgacagttgagtccttatctggtttgaataa |
334 |
Q |
| |
|
|||| |||| || ||| | |||| |||| || ||| ||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
15195774 |
aacaacttctccagcatagtacttgcatactaattcccaaagcgtattcgacaatcgagtccttatctggtttgaataa |
15195852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 56 - 334
Target Start/End: Original strand, 15215992 - 15216270
Alignment:
| Q |
56 |
actctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagatt |
155 |
Q |
| |
|
|||||||| || |||||||||||| ||||| | |||||||||||||||||||| ||| | |||| |||| ||||||| ||||||||| ||| | | |
|
|
| T |
15215992 |
actctatcaattacctcattcaggcgcatctcagccttcttgagataatccccacaatcacagcactcaataaatttctgtgattcagcccggtagaact |
15216091 |
T |
|
| Q |
156 |
cagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgtt |
255 |
Q |
| |
|
| ||| || |||||||||||| |||||||| ||||| ||||||| ||||| ||||||||||| ||||| ||||| | ||||||||||| || | |||| |
|
|
| T |
15216092 |
cggctggaagctgcagaaaaggattctcaaattcttgcacataaacggaaggtcctaaatccattagcatatttgttatatttctaatcacttttatgtt |
15216191 |
T |
|
| Q |
256 |
aacatcttccccggcacgctccttgaatacaaactccaaaagcgtattcgacagttgagtccttatctggtttgaataa |
334 |
Q |
| |
|
|||| |||| || ||| | |||| |||| || ||| ||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
15216192 |
aacaacttctccagcatagtacttgcatactaattcccaaagcgtattcgacaatcgagtccttatctggtttgaataa |
15216270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 69 - 334
Target Start/End: Original strand, 15196238 - 15196503
Alignment:
| Q |
69 |
cctcattcaggcatctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattcagctaaaacttg |
168 |
Q |
| |
|
|||||||||||| ||||| | ||||| |||||||||||||| ||| | | || ||| ||||||| ||||||||| ||| | |||||| ||||||| |
|
|
| T |
15196238 |
cctcattcaggcgcatctcagccttctttagataatccccacaatcatagcgctcaatcaatttctgtgattcagcccggtagaactcagctgaaacttg |
15196337 |
T |
|
| Q |
169 |
cagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaacatcttccccg |
268 |
Q |
| |
|
||| |||||| |||||||| ||||| |||||| ||||||||||||||||| ||||| ||||| | || ||||||||||| ||| | |||| |||| || |
|
|
| T |
15196338 |
cagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatatttgttatatatctaatcagttttctatcaacaacttctcca |
15196437 |
T |
|
| Q |
269 |
gcacgctccttgaatacaaactccaaaagcgtattcgacagttgagtccttatctggtttgaataa |
334 |
Q |
| |
|
||| |||||| |||| || |||||||| ||||||||| | ||||||||||||||||||||||| |
|
|
| T |
15196438 |
gcatagtccttgcatactaataccaaaagcatattcgacaatcgagtccttatctggtttgaataa |
15196503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 69 - 334
Target Start/End: Original strand, 15216656 - 15216921
Alignment:
| Q |
69 |
cctcattcaggcatctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagattcagctaaaacttg |
168 |
Q |
| |
|
|||||||||||| ||||| | ||||| |||||||||||||| ||| | | || ||| ||||||| ||||||||| ||| | |||||| ||||||| |
|
|
| T |
15216656 |
cctcattcaggcgcatctcagccttctttagataatccccacaatcatagcgctcaatcaatttctgtgattcagcccggtagaactcagctgaaacttg |
15216755 |
T |
|
| Q |
169 |
cagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgttaacatcttccccg |
268 |
Q |
| |
|
||| |||||| |||||||| ||||| |||||| ||||||||||||||||| ||||| ||||| | || ||||||||||| ||| | |||| |||| || |
|
|
| T |
15216756 |
cagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatatttgttatatatctaatcagttttctatcaacaacttctcca |
15216855 |
T |
|
| Q |
269 |
gcacgctccttgaatacaaactccaaaagcgtattcgacagttgagtccttatctggtttgaataa |
334 |
Q |
| |
|
||| |||||| |||| || |||||||| ||||||||| | ||||||||||||||||||||||| |
|
|
| T |
15216856 |
gcatagtccttgcatactaataccaaaagcatattcgacaatcgagtccttatctggtttgaataa |
15216921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 24395510 - 24395732
Alignment:
| Q |
21 |
taattttcttttcagtcttagggtccaagtaatg---aactctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtcaaa |
117 |
Q |
| |
|
|||| ||||||||||||| || |||| |||||| |||||||||| ||||||||||||| | || ||| ||||||| |||||||| ||||| ||| | |
|
|
| T |
24395510 |
taatcttcttttcagtctcgggatccatgtaatggccaactctatccatttcctcattcagacgcctttcagctttcttaagataatcaccacaatcaca |
24395609 |
T |
|
| Q |
118 |
acacttaatatatttctgggattcagccttgtaagattcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatcc |
217 |
Q |
| |
|
||||| ||| || | |||||||| ||| ||| | |||||| ||||||| |||||| ||| |||||| |||| ||||||||| |||||||||||| |
|
|
| T |
24395610 |
acactcaatgaatctttgggattctacctgataaaactcagctgaaacttgaagaaaatgagcctcaaaatcttgaccataaacagctggacctaaatcc |
24395709 |
T |
|
| Q |
218 |
atcagcatctttgtaacatttct |
240 |
Q |
| |
|
|| ||||| ||||| | |||||| |
|
|
| T |
24395710 |
attagcatttttgttatatttct |
24395732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1961 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1961
Description:
Target: scaffold1961; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 334
Target Start/End: Original strand, 22 - 201
Alignment:
| Q |
155 |
tcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgt |
254 |
Q |
| |
|
|||||| |||||||||| |||||| |||||||| ||||| |||||| ||||||||||||||||| ||||| || || | ||||||||||||| | | | |
|
|
| T |
22 |
tcagctgaaacttgcagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatattcgttatttttctaatcagttttttat |
121 |
T |
|
| Q |
255 |
taacatcttccccggcacgctccttgaatacaaactccaaaagcgtattcgacagttgagtccttatctggtttgaataa |
334 |
Q |
| |
|
|||| ||||| | ||| |||||| ||| || |||||||| ||||| | | | ||||||||||||||||||||||| |
|
|
| T |
122 |
taacgacttcctcagcatagtccttgcatattaatcccaaaagcatattcaaaaatcgagtccttatctggtttgaataa |
201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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