View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_5 (Length: 572)
Name: NF1441_low_5
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 18 - 560
Target Start/End: Original strand, 33661017 - 33661560
Alignment:
| Q |
18 |
aattatatgttgcaagtgaacaaaactttctaatttcctcatcttttgctctatctgtattgtctaatacaagcatacactccttacaccctgaaaacaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33661017 |
aattatatgttgcaagtgaacaaaactttctaatttcctcatcttttgctctatctgtattgtctaatacaagcatacactccttacaccctgaaaacaa |
33661116 |
T |
|
| Q |
118 |
gtctgaaatannnnnnnngnnnnnnnnc-gatcaagagatactcttcagtaaaaacacacaatggaaaattagagattttcaacataatttatttcaatc |
216 |
Q |
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|||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33661117 |
gtctgaaatattttttttgaaaaaaaaatgatcaagagatactcttcactaaaaacacacaatggaaaattagagattttcaacataatttatttcaatc |
33661216 |
T |
|
| Q |
217 |
ttaaatacagtagatgcaacaatattattcaatacctcatcaacccctggacttcgatcaagcaatatctttctatcaggaccaccttccatcaaagcag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33661217 |
ttaaatacagtagatgcaacaatattattcaatacctcatcaacccctggacttcgatcaagcaatatctttctatcaggaccaccttccatcaaagcag |
33661316 |
T |
|
| Q |
317 |
ttcccagaactgatggctccatagccaatttcagaatgccttggtgaaatccactcatcttgaaagtcaaatttgtcaaaatgcaaacatcagacacata |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33661317 |
ttcccagaactgatggctccatagccaatttcagaatgccttggtgaaatccactcatcttgaaagtcaaatttgtcaaaatgcaaacattagacacata |
33661416 |
T |
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| Q |
417 |
acaaccaatgcaacagagaataagtcccggcttaagtgaacgtaaccaaatttataaaatcaaaacaaaaagtgctgattctgtaccaatccgtcaaaac |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33661417 |
acaaccaatgcaacagagaataagtcccggcttaagtgaacgtaaccaaatttataaaatcaaaacaaaaagtgctgattctgtaccaatccgtcaaaac |
33661516 |
T |
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| Q |
517 |
catttgcttctgcccctctcagaatagagtctgatatctctgct |
560 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33661517 |
catttgcttctgcccctctcagaatagagtctgatatctctgct |
33661560 |
T |
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