View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1441_low_54 (Length: 312)
Name: NF1441_low_54
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_54 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 36315149 - 36314860
Alignment:
| Q |
17 |
agattcaacagttttatcactagattactctggtgtgctcaaaatagaatgtcaagataggaaaccaatgatcatttacacttcacctcaacccaacaac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36315149 |
agattcaacagttttatcactagattactctggtgttctcaaaatagaatgtcaagataggaaaccaatgatcatttacacttcacctcaacccaacaac |
36315050 |
T |
|
| Q |
117 |
aacactgtggccactatgttagacacgggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatccca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36315049 |
aacactgtggccactatgttagacacgggtaactttttgcttcaacaactttacccaaatgggacaaagagtatattatggcagagttttgattatccca |
36314950 |
T |
|
| Q |
217 |
caaactttttgatcccaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtttcatggttgactcctttgctac |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36314949 |
caaactttttgatcccaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtttcatggttgactcctttgctac |
36314860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 24)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 31 - 306
Target Start/End: Complemental strand, 19504544 - 19504266
Alignment:
| Q |
31 |
tatcactagattactctggtgtgctcaaaatagaatgtcaagataggaa---accaatgatcatttacacttcacctcaacccaacaacaacactgtggc |
127 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||| |||| ||||||| |||||| ||||||||| |||| |||||||| | |||| |||||||||| |
|
|
| T |
19504544 |
tatcattagactactctggtgtgctcaaaatagaatttcaaaataggaatttaccaataatcatttactcttcgcctcaaccaaccaacgacactgtggc |
19504445 |
T |
|
| Q |
128 |
cactatgttagacacgggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaactttttg |
227 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| |
|
|
| T |
19504444 |
cactatgttagacaccggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatccaacatacattttg |
19504345 |
T |
|
| Q |
228 |
atcccaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtttcatggttgactcctttgctac |
306 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19504344 |
atctcaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtttcatggttgactccttcgctac |
19504266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 25 - 287
Target Start/End: Complemental strand, 19469993 - 19469728
Alignment:
| Q |
25 |
cagttttatcactagattactctggtgtgctcaaaatagaatgtcaagataggaaa---ccaatgatcatttacacttcacctcaacccaacaacaacac |
121 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||| |||| |||||||| ||||| ||||||||| ||||||||||||| | ||||||||| |
|
|
| T |
19469993 |
cagttttattactagactactctggtgtgctcaaaatagaatctcaaaataggaaattaccaataatcatttactcttcacctcaacctaccaacaacac |
19469894 |
T |
|
| Q |
122 |
tgtggccactatgttagacacgggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaac |
221 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
19469893 |
tatggccactattttagacacgggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagtttcgattatcccacagac |
19469794 |
T |
|
| Q |
222 |
tttttgatcccaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtttca |
287 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
19469793 |
gtattgatcccaatgatgaagttgggagttaatcgaaaaactggacataaatggtcattggtttca |
19469728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 25 - 287
Target Start/End: Complemental strand, 19540917 - 19540652
Alignment:
| Q |
25 |
cagttttatcactagattactctggtgtgctcaaaatagaatgtcaagataggaaa---ccaatgatcatttacacttcacctcaacccaacaacaacac |
121 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||| |||| |||||||| ||||| ||||||||| ||||||||||||| | ||||||||| |
|
|
| T |
19540917 |
cagttttattactagactactctggtgtgctcaaaatagaatctcaaaataggaaattaccaataatcatttactcttcacctcaacctaccaacaacac |
19540818 |
T |
|
| Q |
122 |
tgtggccactatgttagacacgggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaac |
221 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
19540817 |
tatggccactattttagacacgggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagtttcgattatcccacagac |
19540718 |
T |
|
| Q |
222 |
tttttgatcccaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtttca |
287 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
19540717 |
gtattgatcccaatgatgaagttgggagttaatcgaaaaactggacataaatggtcattggtttca |
19540652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 25 - 287
Target Start/End: Original strand, 19591781 - 19592046
Alignment:
| Q |
25 |
cagttttatcactagattactctggtgtgctcaaaatagaatgtcaagataggaaa---ccaatgatcatttacacttcacctcaacccaacaacaacac |
121 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||| |||| |||||||| ||||| ||||||||| ||||||||||||| | ||||||||| |
|
|
| T |
19591781 |
cagttttattactagactactctggtgtgctcaaaatagaatctcaaaataggaaattaccaataatcatttactcttcacctcaacctaccaacaacac |
19591880 |
T |
|
| Q |
122 |
tgtggccactatgttagacacgggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaac |
221 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
19591881 |
tatggccactattttagacacgggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagtttcgattatcccacagac |
19591980 |
T |
|
| Q |
222 |
tttttgatcccaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtttca |
287 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
19591981 |
gtattgatcccaatgatgaagttgggagttaatcgaaaaactggacataaatggtcattggtttca |
19592046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 19344790 - 19345077
Alignment:
| Q |
19 |
attcaacagttttatcactagattactctggtgtgctcaaaatagaatgtcaagataggaaaccaatgatcatttacacttcacctcaacccaacaacaa |
118 |
Q |
| |
|
||||| ||||| ||||||||||||| |||||||||||||||||||||| || ||||||||||||| ||||||||| | ||||||||||||| ||||| |
|
|
| T |
19344790 |
attcagcagttctatcactagattattctggtgtgctcaaaatagaatcataaaataggaaaccaataatcatttactcgtcacctcaacccataaacaa |
19344889 |
T |
|
| Q |
119 |
cactgtggccactatgttagacacgggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccaca |
218 |
Q |
| |
|
|||| |||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
19344890 |
cactttggccactatattagacacaggtaactttgtgcttcaacaatttcacccaaatgggacaaatagtttattatggcagagttttgattatcccgat |
19344989 |
T |
|
| Q |
219 |
aactttttgatcccaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtttcatggttgactcctttgctac |
306 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
19344990 |
cacactttgatcccaacgatgaagttgggagttaatcgaaaaactggacataattggtcattggtttcatggatgactccttcgctac |
19345077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 19448135 - 19448422
Alignment:
| Q |
19 |
attcaacagttttatcactagattactctggtgtgctcaaaatagaatgtcaagataggaaaccaatgatcatttacacttcacctcaacccaacaacaa |
118 |
Q |
| |
|
||||| ||||| ||||||||||||| |||||||||||||||||||||| ||| ||||||||||||| ||||||||| ||||||||||||||| ||||| |
|
|
| T |
19448135 |
attcagcagttctatcactagattattctggtgtgctcaaaatagaatcacaaaataggaaaccaataatcatttactcttcacctcaacccataaacaa |
19448234 |
T |
|
| Q |
119 |
cactgtggccactatgttagacacgggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccaca |
218 |
Q |
| |
|
|||| |||||||||| |||||||| ||||||||||||||||||||| ||||||| |||||| |||||| | | || |||||||||||||||||||| || |
|
|
| T |
19448235 |
cactttggccactatattagacacaggtaactttgtgcttcaacaatttcaccccaatgggtcaaagactgtgttgtggcagagttttgattatccatca |
19448334 |
T |
|
| Q |
219 |
aactttttgatcccaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtttcatggttgactcctttgctac |
306 |
Q |
| |
|
|| |||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
19448335 |
gacgttttgatcccaacgatgaagttaggcgttaatcaaaaaacaggacataattggtcattggtgtcatggttgactccttcgctac |
19448422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 19532941 - 19532654
Alignment:
| Q |
19 |
attcaacagttttatcactagattactctggtgtgctcaaaatagaatgtcaagataggaaaccaatgatcatttacacttcacctcaacccaacaacaa |
118 |
Q |
| |
|
||||| ||||| ||||||||||||| |||||||||||||||||||||| ||| ||||||||||||| ||||||||| ||||||||||||||| ||||| |
|
|
| T |
19532941 |
attcagcagttctatcactagattattctggtgtgctcaaaatagaatcacaaaataggaaaccaataatcatttactcttcacctcaacccataaacaa |
19532842 |
T |
|
| Q |
119 |
cactgtggccactatgttagacacgggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccaca |
218 |
Q |
| |
|
|||| |||||||||| |||||||| ||||||||||||||||||||| ||||||| |||||| |||||| | | || |||||||||||||||||||| || |
|
|
| T |
19532841 |
cactttggccactatattagacacaggtaactttgtgcttcaacaatttcaccccaatgggtcaaagactgtgttgtggcagagttttgattatccatca |
19532742 |
T |
|
| Q |
219 |
aactttttgatcccaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtttcatggttgactcctttgctac |
306 |
Q |
| |
|
|| |||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
19532741 |
gacgttttgatcccaacgatgaagttaggcgttaatcaaaaaacaggacataattggtcattggtgtcatggttgactccttcgctac |
19532654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 25 - 284
Target Start/End: Original strand, 19390218 - 19390477
Alignment:
| Q |
25 |
cagttttatcactagattactctggtgtgctcaaaatagaatgtcaagataggaaaccaatgatcatttacacttcacctcaacccaacaacaacactgt |
124 |
Q |
| |
|
||||||||||| || | ||| ||||||||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||| ||||||||| | |
|
|
| T |
19390218 |
cagttttatcattaaactacactggtgtgctcaaaatagaatctcaaaataggaaaccaataatcatttactcttcacctcaacccataaacaacactat |
19390317 |
T |
|
| Q |
125 |
ggccactatgttagacacgggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaacttt |
224 |
Q |
| |
|
||| |||||| ||||||| |||||||||||||||||| || ||||||||||||| ||||||||| |||||||||||||||||||||||||| || | |
|
|
| T |
19390318 |
ggcaactatgctagacaccggtaactttgtgcttcaaaaatttcacccaaatggtacaaagagtttattatggcagagttttgattatcccgacgacact |
19390417 |
T |
|
| Q |
225 |
ttgatcccaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtt |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19390418 |
ttgatcccaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtt |
19390477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 19376236 - 19376519
Alignment:
| Q |
17 |
agattcaacagttttatcactagattactctggtgtgctcaaaatagaatgtcaagataggaaaccaatgatcatttacacttcacctcaacccaacaac |
116 |
Q |
| |
|
||||||| ||||| |||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| ||||||||||||| | ||| |
|
|
| T |
19376236 |
agattcagcagttctatcactagactactctggtgtgctcaaaatagaatcacaaaataggaaaccaataatcatttactcttcacctcaaccaataaac |
19376335 |
T |
|
| Q |
117 |
aacactgtggccactatgttagacacgggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatccca |
216 |
Q |
| |
|
|||||| |||||||||| |||||||| ||||||||||||||||||||| |||| || |||||| |||||| | | || |||||||||||||||||||| |
|
|
| T |
19376336 |
aacactttggccactatattagacacaggtaactttgtgcttcaacaatttcatcccaatgggtcaaagactgttttgtggcagagttttgattatccat |
19376435 |
T |
|
| Q |
217 |
caaactttttgatcccaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtttcatggttgactcctt |
300 |
Q |
| |
|
|| || |||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||| || ||||||||||||| |
|
|
| T |
19376436 |
cagacgttttgatcccaacgatgaagttaggcgttaatcgaaaaacaggatataattggtcattggtgtcctggttgactcctt |
19376519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 19355091 - 19355368
Alignment:
| Q |
19 |
attcaacagttttatcactagattactctggtgtgctcaaaatagaatgtcaagataggaa---accaatgatcatttacacttcacctcaacccaacaa |
115 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||||||||||||||||||| |||| ||||||| ||| || |||||||| || ||| |||| | ||| |
|
|
| T |
19355091 |
attcagcagttctatcactagactactctggtgtgctcaaaatagaatttcaaaataggaatgtaccgattatcatttattatttgcctgaaccaaccaa |
19355190 |
T |
|
| Q |
116 |
caacactgtggccactatgttagacacgggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatccc |
215 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
19355191 |
cgacactgtggccactatgttagacacaggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatactatggcagagttttgactatcca |
19355290 |
T |
|
| Q |
216 |
acaaactttttgatcccaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtttcatggttg |
293 |
Q |
| |
|
||| | ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19355291 |
acagatagtttgatcccaacgatgaagttaggtgttaatcgaaaaacaggacataattggtcattggtttcacggttg |
19355368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 19337069 - 19337361
Alignment:
| Q |
17 |
agattcaacagttttatcactagattactctggtgtgctcaaaatagaatgtcaagataggaa---accaatgatcatttacacttcacctcaacccaac |
113 |
Q |
| |
|
||||||| ||||| |||||||||| ||||||||||| ||||||||||||| |||| ||||||| |||||| |||||||| ||| |||||||| | | |
|
|
| T |
19337069 |
agattcagcagttctatcactagactactctggtgtactcaaaatagaatttcaaaataggaatgtaccaattatcatttattattcgcctcaaccaacc |
19337168 |
T |
|
| Q |
114 |
aacaacactgtggccactatgttagacacgggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatc |
213 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19337169 |
aacgacactgtggccactatgttagacaccggtaacttcgtgcttcaacagcttcacccaaatgggacaaagagtatattatggcagagttttgattctc |
19337268 |
T |
|
| Q |
214 |
ccacaaactttttgatcccaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtttcatggttgactcctttgctac |
306 |
Q |
| |
|
|| | || |||| | |||||||||||||| || |||||||| |||||||||||||||||||||||||||||| ||||| ||| || ||||| |
|
|
| T |
19337269 |
ccgtagacactttgttaccaacgatgaagttaggtgttaatcgtaaaacaggacataattggtcattggtttcacggttggctcattcgctac |
19337361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 25 - 287
Target Start/End: Original strand, 19410434 - 19410696
Alignment:
| Q |
25 |
cagttttatcactagattactctggtgtgctcaaaatagaatgtcaagataggaaaccaatgatcatttacacttcacctcaacccaacaacaacactgt |
124 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||| | |||||||||||| |
|
|
| T |
19410434 |
cagttctatcactagactactctggtgtgctcaaaatagaatctcaaaataggaaaccaataatcatttactcttcacctcaacctaccaacaacactgt |
19410533 |
T |
|
| Q |
125 |
ggccactatgttagacacgggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaacttt |
224 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||| ||| || || || ||| |||| | || |||||||||||||||||||| || || || |
|
|
| T |
19410534 |
ggccactatgttagacgccggtaactttgtgcttcaacaatttcttcccaacggctcaatgagtgtgttgtggcagagttttgattatccatcagacgtt |
19410633 |
T |
|
| Q |
225 |
ttgatcccaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtttca |
287 |
Q |
| |
|
|||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19410634 |
ttgatcccaatgatgaagttaggcgttaatcgaaaaacaggacataattggtcattggtttca |
19410696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 25 - 287
Target Start/End: Original strand, 19457453 - 19457715
Alignment:
| Q |
25 |
cagttttatcactagattactctggtgtgctcaaaatagaatgtcaagataggaaaccaatgatcatttacacttcacctcaacccaacaacaacactgt |
124 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||| | |||||||||||| |
|
|
| T |
19457453 |
cagttctatcactagactactctggtgtgctcaaaatagaatctcaaaataggaaaccaataatcatttactcttcacctcaacctaccaacaacactgt |
19457552 |
T |
|
| Q |
125 |
ggccactatgttagacacgggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaacttt |
224 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||| ||| || || || ||| |||| | || |||||||||||||||||||| || || || |
|
|
| T |
19457553 |
ggccactatgttagacgccggtaactttgtgcttcaacaatttcttcccaacggctcaatgagtgtgttgtggcagagttttgattatccatcagacgtt |
19457652 |
T |
|
| Q |
225 |
ttgatcccaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtttca |
287 |
Q |
| |
|
|||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19457653 |
ttgatcccaatgatgaagttaggcgttaatcgaaaaacaggacataattggtcattggtttca |
19457715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 25 - 287
Target Start/End: Complemental strand, 19523625 - 19523363
Alignment:
| Q |
25 |
cagttttatcactagattactctggtgtgctcaaaatagaatgtcaagataggaaaccaatgatcatttacacttcacctcaacccaacaacaacactgt |
124 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||| | |||||||||||| |
|
|
| T |
19523625 |
cagttctatcactagactactctggtgtgctcaaaatagaatctcaaaataggaaaccaataatcatttactcttcacctcaacctaccaacaacactgt |
19523526 |
T |
|
| Q |
125 |
ggccactatgttagacacgggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaacttt |
224 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||| ||| || || || ||| |||| | || |||||||||||||||||||| || || || |
|
|
| T |
19523525 |
ggccactatgttagacgccggtaactttgtgcttcaacaatttcttcccaacggctcaatgagtgtgttgtggcagagttttgattatccatcagacgtt |
19523426 |
T |
|
| Q |
225 |
ttgatcccaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtttca |
287 |
Q |
| |
|
|||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19523425 |
ttgatcccaatgatgaagttaggcgttaatcgaaaaacaggacataattggtcattggtttca |
19523363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 19404367 - 19404650
Alignment:
| Q |
17 |
agattcaacagttttatcactagattactctggtgtgctcaaaatagaatgtcaagataggaaaccaatgatcatttacacttcacctcaacccaacaac |
116 |
Q |
| |
|
||||||| ||||| |||| ||||| ||||| ||||||||||||||||||| ||| |||||||||||| |||||||| ||||||||||||||| ||| |
|
|
| T |
19404367 |
agattcagcagttctatcgctagactactccggtgtgctcaaaatagaatcacaaagtaggaaaccaattatcatttattcttcacctcaacccataaac |
19404466 |
T |
|
| Q |
117 |
aacactgtggccactatgttagacacgggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatccca |
216 |
Q |
| |
|
|||||| |||| ||||| |||||||| |||||||||||||||| |||| ||||||| |||||| |||||| | | || ||||||||||||||||| || |
|
|
| T |
19404467 |
aacactttggctactatattagacacaggtaactttgtgcttcgacaatttcaccccaatgggtcaaagactgtgttgtggcagagttttgattacccat |
19404566 |
T |
|
| Q |
217 |
caaactttttgatcccaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtttcatggttgactcctt |
300 |
Q |
| |
|
|| || |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||| ||||||| |
|
|
| T |
19404567 |
cagacgttttgatcccaacgatgaagttaggagttaatcgaaaaacagcacataattggtcattggtgtcatggttaactcctt |
19404650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 25 - 306
Target Start/End: Original strand, 19287338 - 19287622
Alignment:
| Q |
25 |
cagttttatcactagattactctggtgtgctcaaaatagaatgtcaagataggaaa---ccaatgatcatttacacttcacctcaacccaacaacaacac |
121 |
Q |
| |
|
||||| ||||| |||| ||||||||||||||||||||||||| |||| |||||||| || || ||||||||| |||| ||||| || | ||| || || |
|
|
| T |
19287338 |
cagttctatcattagactactctggtgtgctcaaaatagaatctcaaaataggaaattaccgattatcatttactcttcgcctcatccgaccaataatac |
19287437 |
T |
|
| Q |
122 |
tgtggccactatgttagacacgggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaac |
221 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
19287438 |
tgtcgccactatgttagacaccggtaactttgtgcttcaaaaaattcacccaaatgggacaaagaatatattatggcagagttttgattatcccacagcc |
19287537 |
T |
|
| Q |
222 |
tttttgatcccaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtttcatggttgactcctttgctac |
306 |
Q |
| |
|
|||||||||||| |||||||| || ||||| |||||||| |||||||||||||| ||||||||||||||| ||| || ||||| |
|
|
| T |
19287538 |
actttgatcccaacaatgaagttaggtgttaaccgaaaaaccggacataattggtcgttggtttcatggttggctcattcgctac |
19287622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 19173308 - 19173024
Alignment:
| Q |
19 |
attcaacagttttatcactagattactctggtgtgctcaaaatagaatgtcaagataggaaaccaatgatcatttacacttcacctcaacccaacaacaa |
118 |
Q |
| |
|
||||| ||||| | ||||||||||| |||||||||||||||||| ||| ||| ||||||||||||| ||||| | | ||||||||||||||| |||| |
|
|
| T |
19173308 |
attcagcagttctttcactagattattctggtgtgctcaaaatacaatcacaaaataggaaaccaataatcatatgctcttcacctcaacccataaaca- |
19173210 |
T |
|
| Q |
119 |
cactgtggccactatgttagacacgggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccaca |
218 |
Q |
| |
|
|| |||||||||| |||||||| |||||||||||||||| |||| || |||| || |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
19173209 |
--ctttggccactatattagacacaggtaactttgtgcttcgacaaatttaccccaacgggacaaagagtatattatggcagagttttgattatcccata |
19173112 |
T |
|
| Q |
219 |
aactttttgatcccaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtttcatggttgactcctttgctac |
306 |
Q |
| |
|
| | ||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||| |||||| |||||| ||||| |
|
|
| T |
19173111 |
accactttgatcccaacgatgaagttaggtgttaaccgaaaaaccggacataattggtcattggtttcgtggttggctccttcgctac |
19173024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 19469060 - 19468792
Alignment:
| Q |
19 |
attcaacagttttatcactagattactctggtgtgctcaaaatagaatgtcaagataggaaaccaatgatcatttacacttcacctcaacccaacaacaa |
118 |
Q |
| |
|
||||| ||||| ||||| |||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| ||||||||||||||| ||||| |
|
|
| T |
19469060 |
attcagcagttctatcattagactactctggtgtgctcaaaatagaatcacaaaataggaaaccaataatcatttactcttcacctcaacccataaacaa |
19468961 |
T |
|
| Q |
119 |
cactgtggccactatgttagacacgggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccaca |
218 |
Q |
| |
|
|||| |||||||||| |||||||| |||||||||||||||| |||| |||| || ||||| ||| |||| | || ||||||||||||||||||||| |
|
|
| T |
19468960 |
cactatggccactatattagacacaggtaactttgtgcttcgacaatttcatcccaatggctcaatgagtgtgttgtggcagagttttgattatcccgat |
19468861 |
T |
|
| Q |
219 |
aactttttgatcccaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtttca |
287 |
Q |
| |
|
|| |||| | |||||||||||||| || |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
19468860 |
gacactttggttccaacgatgaagttaggcgttaatcggaaaacaggacataattggtcattggtttca |
19468792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 19555981 - 19555713
Alignment:
| Q |
19 |
attcaacagttttatcactagattactctggtgtgctcaaaatagaatgtcaagataggaaaccaatgatcatttacacttcacctcaacccaacaacaa |
118 |
Q |
| |
|
||||| ||||| ||||| |||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| ||||||||||||||| ||||| |
|
|
| T |
19555981 |
attcagcagttctatcattagactactctggtgtgctcaaaatagaatcacaaaataggaaaccaataatcatttactcttcacctcaacccataaacaa |
19555882 |
T |
|
| Q |
119 |
cactgtggccactatgttagacacgggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccaca |
218 |
Q |
| |
|
|||| |||||||||| |||||||| |||||||||||||||| |||| |||| || ||||| ||| |||| | || ||||||||||||||||||||| |
|
|
| T |
19555881 |
cactatggccactatattagacacaggtaactttgtgcttcgacaatttcatcccaatggctcaatgagtgtgttgtggcagagttttgattatcccgat |
19555782 |
T |
|
| Q |
219 |
aactttttgatcccaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtttca |
287 |
Q |
| |
|
|| |||| | |||||||||||||| || |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
19555781 |
gacactttggttccaacgatgaagttaggcgttaatcggaaaacaggacataattggtcattggtttca |
19555713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 25 - 183
Target Start/End: Original strand, 19489728 - 19489886
Alignment:
| Q |
25 |
cagttttatcactagattactctggtgtgctcaaaatagaatgtcaagataggaaaccaatgatcatttacacttcacctcaacccaacaacaacactgt |
124 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||| ||| ||||||||||||| ||||||||| ||| ||||||||| ||||||||| || |
|
|
| T |
19489728 |
cagttttatcactagcctactctggtgcgctcaaaatagaatcacaaaataggaaaccaataatcatttacttgtcaactcaacccaccaacaacacggt |
19489827 |
T |
|
| Q |
125 |
ggccactatgttagacacgggtaactttgtgcttcaacaacttcacccaaatgggacaa |
183 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
19489828 |
ggccactatgttagacaccggtaacttggtgattcaacaacttcacccaaatgggacaa |
19489886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 19468231 - 19468140
Alignment:
| Q |
19 |
attcaacagttttatcactagattactctggtgtgctcaaaatagaatgtcaagataggaaaccaatgatcatttacacttcacctcaaccca |
111 |
Q |
| |
|
||||| ||||| ||||| |||| ||||||||||||||||||||||||| ||| || |||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
19468231 |
attcagcagttctatcattagactactctggtgtgctcaaaatagaatcacaaaat-ggaaaccaataatcatttactcttcacctcaaccca |
19468140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 19185068 - 19185115
Alignment:
| Q |
19 |
attcaacagttttatcactagattactctggtgtgctcaaaatagaat |
66 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19185068 |
attcagcagttctatcactagactactctggtgtgctcaaaatagaat |
19185115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 16004306 - 16004341
Alignment:
| Q |
31 |
tatcactagattactctggtgtgctcaaaatagaat |
66 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16004306 |
tatcactagactactctggtgtgctcaaaatagaat |
16004341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 19458303 - 19458256
Alignment:
| Q |
19 |
attcaacagttttatcactagattactctggtgtgctcaaaatagaat |
66 |
Q |
| |
|
||||| ||||| ||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
19458303 |
attcagcagttctatcattagactactctggtgtgctcaaaatagaat |
19458256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 305
Target Start/End: Original strand, 19542803 - 19542973
Alignment:
| Q |
135 |
ttagacacgggtaactttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaactttttgatcccaa |
234 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| ||||||| ||||| ||| ||| | |||||||||||||||||| ||| | | ||| || ||| |||| |
|
|
| T |
19542803 |
ttagacaccggtaactttgttcttcaacaatttcaccccaatggttcaacaagtgttttatggcagagttttgatcatctcttacactgttggattccaa |
19542902 |
T |
|
| Q |
235 |
cgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtttcatggttgactcctttgcta |
305 |
Q |
| |
|
||||||||| || |||| |||| ||| |||||||||||||| || ||||||||| ||||||||| |||| |
|
|
| T |
19542903 |
tgatgaagttaggtattaaccgaataaccggacataattggtctttagtttcatggatgactccttcgcta |
19542973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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