View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_56 (Length: 309)
Name: NF1441_low_56
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 7 - 300
Target Start/End: Complemental strand, 40128454 - 40128161
Alignment:
| Q |
7 |
cttctttgttaaccaaaaaagatacacactatttgattgttagttcagccgtagttcatgctatggattaaaaaatttgatcatcccgtgnnnnnnnngt |
106 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| || |
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| T |
40128454 |
cttctttgttaaccaaaaaagatacgcactatttgattgttagttcagacggagttcatgctatggattaaaaaatttgatcatcccagtgtttttttgt |
40128355 |
T |
|
| Q |
107 |
ttcatatacatatgtgcagggtttgcatagacaatgattcatgcagaaactgcacggtggtgaaggttatagaagcaaatatatagccttaatttagctt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40128354 |
ttcatatacatatgtgcagggtttgcatagacaatgattcatgcagaaactgcacggtggtgaaggttatagaagcaaatatatagccttaatttaactt |
40128255 |
T |
|
| Q |
207 |
tacttaattattatagcacttttcatttaaatcaaatattaatttgcatagttcatttgtgtttacagattgatagagcaaacaagcatgggat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40128254 |
tacttaattattatagcacttttcatttaaatcaaatattaatttgcatagttcatttgtgttaacagattgatagagcaaacaagcatgggat |
40128161 |
T |
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