View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_59 (Length: 301)
Name: NF1441_low_59
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 30412763 - 30412502
Alignment:
| Q |
19 |
aaagcagcaccgttgaatcatctgtccctgctcctgagcgtgaggtcacgcgccgagaagttcccaccggcggtagcgtcatggatcggttcccttttct |
118 |
Q |
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| T |
30412763 |
aaagcagcaccgttgaatcatctgtccctgctcctgaccgtgaggtcacgcgccgagaagttcccaccggcggtagcgtcatggatcggttcccttttct |
30412664 |
T |
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| Q |
119 |
ctcgattcagcaacagatcatgccgtttgctggtgctggtgccggtgctgttgatggaatggtgccagttttcttttacgatccagcgggtcgagctgag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30412663 |
ctcgattcagcaacagatcatgccgtttgctggtgctggtgccggtgctgttgatggaatggtgccagttttcttttacgatccagcgggtcgagctgag |
30412564 |
T |
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| Q |
219 |
tttttgaaccagcggtttactaacaggtttgaaccggaaccggttcagtttaacatcgggtt |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30412563 |
tttttgaaccagcggtttactaacaggtttgaaccggaaccggttcagtttaacatcgggtt |
30412502 |
T |
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