View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441_low_6 (Length: 553)

Name: NF1441_low_6
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441_low_6
NF1441_low_6
[»] chr7 (9 HSPs)
chr7 (134-537)||(4302815-4303219)
chr7 (134-256)||(11001101-11001223)
chr7 (146-231)||(1369529-1369614)
chr7 (134-234)||(8915448-8915547)
chr7 (134-254)||(1217487-1217605)
chr7 (137-200)||(1786420-1786483)
chr7 (134-256)||(13883010-13883133)
chr7 (137-234)||(11228432-11228528)
chr7 (140-253)||(27142353-27142462)
[»] chr2 (12 HSPs)
chr2 (134-535)||(35681615-35682016)
chr2 (134-349)||(31635882-31636097)
chr2 (341-537)||(31635502-31635698)
chr2 (139-230)||(280294-280385)
chr2 (134-203)||(27952652-27952721)
chr2 (134-256)||(33053109-33053230)
chr2 (136-196)||(2165624-2165684)
chr2 (135-256)||(32162243-32162363)
chr2 (134-233)||(22011095-22011194)
chr2 (135-192)||(23457389-23457446)
chr2 (158-234)||(18945663-18945739)
chr2 (134-234)||(36648585-36648685)
[»] chr8 (7 HSPs)
chr8 (189-517)||(37192733-37193063)
chr8 (134-231)||(23573249-23573346)
chr8 (134-262)||(2688855-2688981)
chr8 (134-196)||(22922177-22922239)
chr8 (136-207)||(22512377-22512448)
chr8 (134-192)||(26377776-26377834)
chr8 (140-234)||(24577811-24577905)
[»] chr1 (8 HSPs)
chr1 (137-234)||(10926906-10927003)
chr1 (142-256)||(13441924-13442036)
chr1 (134-256)||(23988913-23989035)
chr1 (137-202)||(8966030-8966095)
chr1 (134-234)||(10927814-10927914)
chr1 (137-232)||(40805571-40805666)
chr1 (149-234)||(31915247-31915332)
chr1 (134-202)||(31522576-31522644)
[»] chr6 (14 HSPs)
chr6 (134-255)||(18203126-18203246)
chr6 (134-257)||(22873499-22873622)
chr6 (134-234)||(34374062-34374162)
chr6 (134-234)||(22888965-22889065)
chr6 (134-254)||(12881715-12881834)
chr6 (134-234)||(22910508-22910608)
chr6 (134-196)||(3541947-3542009)
chr6 (134-196)||(30049617-30049679)
chr6 (134-196)||(30051904-30051966)
chr6 (134-234)||(12778684-12778782)
chr6 (145-195)||(18720019-18720069)
chr6 (134-194)||(32361109-32361169)
chr6 (142-197)||(8047663-8047718)
chr6 (136-164)||(11194398-11194426)
[»] chr5 (3 HSPs)
chr5 (142-256)||(21845225-21845335)
chr5 (134-255)||(18252109-18252230)
chr5 (141-196)||(19677629-19677684)
[»] chr4 (7 HSPs)
chr4 (142-234)||(22716324-22716416)
chr4 (142-234)||(22988801-22988893)
chr4 (134-230)||(6659656-6659751)
chr4 (134-234)||(10494634-10494734)
chr4 (136-234)||(7635000-7635098)
chr4 (134-196)||(13085421-13085483)
chr4 (142-212)||(9260297-9260367)
[»] scaffold0054 (3 HSPs)
scaffold0054 (136-256)||(49002-49122)
scaffold0054 (134-234)||(10361-10461)
scaffold0054 (136-256)||(37404-37523)
[»] chr3 (5 HSPs)
chr3 (135-256)||(365879-365999)
chr3 (134-256)||(8536658-8536780)
chr3 (134-184)||(3064066-3064116)
chr3 (150-232)||(2473000-2473084)
chr3 (137-182)||(24516698-24516743)
[»] scaffold0110 (1 HSPs)
scaffold0110 (134-196)||(45943-46005)
[»] scaffold0024 (2 HSPs)
scaffold0024 (134-234)||(145444-145544)
scaffold0024 (134-234)||(144179-144282)


Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 134 - 537
Target Start/End: Complemental strand, 4303219 - 4302815
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4303219 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 4303120  T
Q  234 gcacacccacccggatcccattggttgaactgtgaaggtccgtttttatggacagagctgtcactgtgcaatgtaccaacaatagcagaatcacttgata 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4303119 gcacacccacccggatcccattggttgaactgtgaaggtccgtttttatggacagagctgtcactgtgcaatgtaccaacaatagcagaatcacttgata 4303020  T
Q  334 attctatataagttagagcactgttaagtgatgcctaatcattttgtacttgaagtataagaatgaatgaaaccaacacagttgacgaatccccttttat 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4303019 attctatataagttagagcactgttaagtgatgcctaatcattttgtacttgaagtataagaatgaatgaaaccaacacagttgacgaatccccttttat 4302920  T
Q  434 ttgagagaataaccaatatcctttttcatgaaatccaagtaaa-gtttaataacatgcagaacaccaaatggtgagagtaccctttgtataatgtttctt 532  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4302919 ttgagagaataaccaatatcctttttcatgaaatccaagtaaaggtttaataacatgcagaacaccaaatggtgagagtacccttagtataatgtttctt 4302820  T
Q  533 ggttc 537  Q
    |||||    
T  4302819 ggttc 4302815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 134 - 256
Target Start/End: Original strand, 11001101 - 11001223
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 233  Q
    ||||||||||||||||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||||  |||||||||||||| ||||    
T  11001101 ccctcctacatcagtctcctccacctctgaagaactcgaccccaaattctcattgtgataaagagcttcccatgcatgttaactcctccaatgaaaaaga 11001200  T
Q  234 gcacacccacccggatcccattg 256  Q
    |  || || || |||||||||||    
T  11001201 gatcatcctcctggatcccattg 11001223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 146 - 231
Target Start/End: Complemental strand, 1369614 - 1369529
Alignment:
Q  146 agtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaa 231  Q
    ||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  1369614 agtctcctccacctctgaagaactcgagcccgagttcttattctgataaagagcttcccatgaatgttgactcctccaatgaacaa 1369529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 134 - 234
Target Start/End: Original strand, 8915448 - 8915547
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 233  Q
    ||||||||||||||||||||||| |||||||||||| || ||||| |||||||| | ||||| ||| |||||||||||| ||||||||| ||||||||||    
T  8915448 ccctcctacatcagtctcctccatctctgaagaactagaccccgaattctcattctaataaaaagc-tcccatgcatgttgactcctccgatgaacaaga 8915546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 134 - 254
Target Start/End: Original strand, 1217487 - 1217605
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 233  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||||||| | ||||||||||||| ||  |||||||||||  ||||||||| |||||||    
T  1217487 ccctcctgcatcagtctcctccacctttgaagaactcga-cccgagttcacgttttgataaagagatt-tcatgcatgtcgtgtcctccaattaacaaga 1217584  T
Q  234 gcacacccacccggatcccat 254  Q
    |  ||||| || |||||||||    
T  1217585 gaccaccctcctggatcccat 1217605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 1786483 - 1786420
Alignment:
Q  137 tcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagct 200  Q
    |||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  1786483 tcctacatgagtctcctccacctctgaagaactcgacctcgagttctcattttgataaagagct 1786420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 256
Target Start/End: Original strand, 13883010 - 13883133
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgc--atgtcgactcctccaatgaacaa 231  Q
    ||||||| |||||||||| ||||||||| |||||||||| |||||||||||||| | |||||||| ||| |||||  |||| | |||||||||| |||||    
T  13883010 ccctcctgcatcagtctcgtccacctctaaagaactcga-cccgagttctcattctaataaagagattctcatgcatatgttggctcctccaataaacaa 13883108  T
Q  232 gagcacacccacccggatcccattg 256  Q
    |||  ||||| || |||||||||||    
T  13883109 gagaccaccctcctggatcccattg 13883133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 234
Target Start/End: Complemental strand, 11228528 - 11228432
Alignment:
Q  137 tcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 234  Q
    |||||||||||||| |||| ||||| ||||||| |  |||||||||||||| | ||||||| |||||||||||||  |||||||  ||||||||||||    
T  11228528 tcctacatcagtcttctcc-cctcttaagaacttgcccccgagttctcattctaataaagaacttcccatgcatgatgactcctataatgaacaagag 11228432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 253
Target Start/End: Complemental strand, 27142462 - 27142353
Alignment:
Q  140 tacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaa-gagcttcccatgcatgtcgactcctccaatgaacaagagcaca 238  Q
    ||||||||||||||| ||    |||||| |||| ||| |||||| ||| ||||||| |||||||| |||||||| | ||| |||||||||||  || |||    
T  27142462 tacatcagtctcctctac----gaagaaatcgaccccaagttcttattatgataaaagagcttcc-atgcatgttggctcttccaatgaacagaagaaca 27142368  T
Q  239 cccacccggatccca 253  Q
    |||||||| ||||||    
T  27142367 cccacccgaatccca 27142353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 134 - 535
Target Start/End: Complemental strand, 35682016 - 35681615
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 233  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| ||||||| || ||||||||||||| | |||||||| ||||||| ||||||||||||    
T  35682016 ccctcctgcatcagtctcctccacctctgaagaactcgaccccaagttctctttctgataaagagctttctatgcatgttgactccttcaatgaacaaga 35681917  T
Q  234 gcacacccacccggatcccattggttgaactgtgaaggtccgtttttatggacagagctgtcactgtgcaatgtaccaacaatagcagaatcacttgata 333  Q
    |     ||||| |||||||||||||||||  ||||  |||| |||||||||||| ||| | ||||| |||| ||||||||||||||||| ||||||||||    
T  35681916 g----accacctggatcccattggttgaatcgtgagcgtccctttttatggacaaagcagccactgagcaaggtaccaacaatagcagactcacttgata 35681821  T
Q  334 attctatataagttagagcactgttaagtgatgcctaatcattttgtacttgaagtataagaatgaatgaaaccaacacagttgacgaatccccttttat 433  Q
    ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||  ||||||||| ||||||    
T  35681820 attctgtataagttagagtactgttaagtgatgcctgatcattttgtacttgaagtgtaagaatgaatgaaaccaacacagtaaacgaatccctttttat 35681721  T
Q  434 ttgagagaataaccaatatcctttttcatgaaatccaagtaaa-gtttaataacat---gcagaacaccaaatggtgagagtaccctttgtataatgttt 529  Q
    || |||||||||||||||||| ||||||||||||||||||||| ||||||||||||   ||||||||||||||||||||||||||||| || ||| ||||    
T  35681720 ttaagagaataaccaatatcccttttcatgaaatccaagtaaaggtttaataacatgcagcagaacaccaaatggtgagagtacccttagtctaacgttt 35681621  T
Q  530 cttggt 535  Q
    ||||||    
T  35681620 cttggt 35681615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 134 - 349
Target Start/End: Complemental strand, 31636097 - 31635882
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 233  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||    
T  31636097 ccctcctacatcagtctcctccacctctgaagaactcgaatccgagttctcatttagataaagagtttcccatgcatgttgactcctccaatgaacaaga 31635998  T
Q  234 gcacacccacccggatcccattggttgaactgtgaaggtccgtttttatggacagagctgtcactgtgcaatgtaccaacaatagcagaatcacttgata 333  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||    
T  31635997 gcacacccacccggatcccattggttgaactctgaaggtccgtttttatggacagagcagccactgtgcaatgtaccaacaatagcagactcacttgata 31635898  T
Q  334 attctatataagttag 349  Q
    ||||||||||||||||    
T  31635897 attctatataagttag 31635882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 341 - 537
Target Start/End: Complemental strand, 31635698 - 31635502
Alignment:
Q  341 ataagttagagcactgttaagtgatgcctaatcattttgtacttgaagtataagaatgaatgaaaccaacacagttgacgaatccccttttatttgagag 440  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||    
T  31635698 ataagttagagcaccgttaagtgatgcctgatcattttgtacttgaagtataagaataaatgaaaccaacaca-tagacgaatccccttttatttgagag 31635600  T
Q  441 aataaccaatatcctttttcatgaaatccaagtaaa-gtttaataacatgcagaacaccaaatggtgagagtaccctttgtataatgtttcttggttc 537  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31635599 aataaccaatatcctttttcatgaaatccaagtaaaggtttaataacatgcagaacaccaaatggtgagagtacccttggtataatgtttcttggttc 31635502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 280294 - 280385
Alignment:
Q  139 ctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaaca 230  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| || ||||||||||||||    
T  280294 ctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttcacatgcatgttgaatcctccaatgaaca 280385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 27952652 - 27952721
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcc 203  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  27952652 ccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttcc 27952721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 134 - 256
Target Start/End: Complemental strand, 33053230 - 33053109
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 233  Q
    |||| |||||||||||||||||||||||||||||||||| |||| ||||| ||| | |||||||||||| ||| |||||||||||||| ||| |||||||    
T  33053230 cccttctacatcagtctcctccacctctgaagaactcgaccccg-gttcttattctaataaagagcttctcattcatgtcgactcctctaataaacaaga 33053132  T
Q  234 gcacacccacccggatcccattg 256  Q
    |  ||||| || | |||||||||    
T  33053131 gaccaccctcctgaatcccattg 33053109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 2165684 - 2165624
Alignment:
Q  136 ctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 196  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  2165684 ctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 2165624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 135 - 256
Target Start/End: Original strand, 32162243 - 32162363
Alignment:
Q  135 cctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 234  Q
    |||| ||||| ||||||||||| ||||||| ||||| | |  ||||||||||| |||||||||||||||||||||||| |||| ||| ||||||||||||    
T  32162243 cctcttacattagtctcctccatctctgaaaaactcaaccttgagttctcattctgataaagagcttcccatgcatgttgact-ctctaatgaacaagag 32162341  T
Q  235 cacacccacccggatcccattg 256  Q
      ||||| ||  ||||||||||    
T  32162342 accaccctccttgatcccattg 32162363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 22011194 - 22011095
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 233  Q
    ||||||| ||||| |||||||||||||| |||||||||| || ||||||||||| | |||||||  ||| |||| |||| ||||||| | ||||||||||    
T  22011194 ccctcctgcatcactctcctccacctctaaagaactcgaccctgagttctcattctaataaagaatttctcatgtatgttgactccttcgatgaacaaga 22011095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 23457446 - 23457389
Alignment:
Q  135 cctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgat 192  Q
    ||||||||||||||| ||||||||||||||||||||   |||||||||||||| ||||    
T  23457446 cctcctacatcagtcgcctccacctctgaagaactctgacccgagttctcattctgat 23457389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 18945739 - 18945663
Alignment:
Q  158 ctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 234  Q
    ||||||| ||||||||||||| |||||||| |||| ||||| ||| ||| |||||  |||||| |||||||||||||    
T  18945739 ctctgaaaaactcgatcccgaattctcattctgattaagagtttctcattcatgttaactcctgcaatgaacaagag 18945663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 234
Target Start/End: Complemental strand, 36648685 - 36648585
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgat-aaagagcttcccatgcatgtcgactcctccaatgaacaag 232  Q
    ||||||||||| ||||||||||| || ||||||||||||  || ||||||  || |||| |||| |||| |||||||||  ||||| ||||||||| |||    
T  36648685 ccctcctacatgagtctcctccatctatgaagaactcgactcccagttcttgttctgataaaagtgctt-ccatgcatgatgactcttccaatgaataag 36648587  T
Q  233 ag 234  Q
    ||    
T  36648586 ag 36648585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 189 - 517
Target Start/End: Complemental strand, 37193063 - 37192733
Alignment:
Q  189 tgataaagagcttcccatgcatgtcgactcctccaatgaa-caagagcacacccacccggatcccattggttgaactgtgaaggtccgtttttatggaca 287  Q
    |||| |||||||  |||||||||| |||||||||||  || |||||| ||| || || |||||||||||  |||||||||| ||||| ||||||||||||    
T  37193063 tgatgaagagctctccatgcatgttgactcctccaaaaaaacaagagaacatcctcctggatcccattgagtgaactgtgagggtccctttttatggaca 37192964  T
Q  288 gagctgtcactgtgcaatgtaccaacaatagcagaatcacttgataattctatataagttagagcactgttaagtgatgcctaatcattttgtacttgaa 387  Q
     ||| | ||||| |||||||||||||||| |||||  ||||||||||||||||| ||| ||||||| ||||||||||||||| | ||| |||||||||||    
T  37192963 aagcagccactgagcaatgtaccaacaattgcagacgcacttgataattctatacaagctagagcattgttaagtgatgcctgaccatgttgtacttgaa 37192864  T
Q  388 gtataagaatgaatgaaaccaacacagttgacgaatccccttttatttgagagaataaccaatatcctttttcatgaaatccaagtaaa-gtttaataac 486  Q
    ||||| ||||||||||||||||||||||    | ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  37192863 gtataggaatgaatgaaaccaacacagtaagtggatccctttttatttgagagaataaccaatatcctttttcatgaagtccaagtaaaggtttaataac 37192764  T
Q  487 atgcagaacaccaaatggtgagagtaccctt 517  Q
    |||||||||| ||||||||||||||||||||    
T  37192763 atgcagaacatcaaatggtgagagtaccctt 37192733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 23573346 - 23573249
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaa 231  Q
    |||| |||||| ||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23573346 cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagcttcccatgcatgttgactcctccaatgaacaa 23573249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 134 - 262
Target Start/End: Complemental strand, 2688981 - 2688855
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 233  Q
    ||||||||||| |||||||||||||| |||||||||||||| |||||||||||| | ||  |||| ||||||||||||| ||||||||||||||||| ||    
T  2688981 ccctcctacatgagtctcctccacctatgaagaactcgatcacgagttctcattctaat--agagtttcccatgcatgttgactcctccaatgaacatga 2688884  T
Q  234 gcacacccacccggatcccattggttgaa 262  Q
    |  ||||| |  |||||||||||| ||||    
T  2688883 gatcaccctcatggatcccattgggtgaa 2688855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 22922177 - 22922239
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 196  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||    
T  22922177 ccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttcataaag 22922239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 22512377 - 22512448
Alignment:
Q  136 ctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatg 207  Q
    ||||| |||||||||||||||||||| |||||||||| |||||||||| ||| ||||||  |||||||||||    
T  22512377 ctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattctgataagaagcttcccatg 22512448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 26377834 - 26377776
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgat 192  Q
    |||||||||||||||||||||||||| |||||||||||| ||| |||||||||| ||||    
T  26377834 ccctcctacatcagtctcctccacctttgaagaactcgaccccaagttctcattctgat 26377776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 234
Target Start/End: Original strand, 24577811 - 24577905
Alignment:
Q  140 tacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 234  Q
    |||||||||||||||||| ||||||||| |||| |  |||||||| || ||||| ||| |||| | ||||| |  ||||||||||| ||||||||    
T  24577811 tacatcagtctcctccacttctgaagaattcgaccttgagttctccttctgatacagaacttcgcttgcatatttactcctccaataaacaagag 24577905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 137 - 234
Target Start/End: Complemental strand, 10927003 - 10926906
Alignment:
Q  137 tcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 234  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||| |||||    
T  10927003 tcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagaacttcccatgcatgttgactcctccaatgaataagag 10926906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 142 - 256
Target Start/End: Original strand, 13441924 - 13442036
Alignment:
Q  142 catcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagagcacaccc 241  Q
    |||||||||||||||||||||||||| ||||||   |||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||  || ||    
T  13441924 catcagtctcctccacctctgaagaattcgatca--agttctcattctgataaagagcttcccatgcatgttgactcctccaatgagcaagagatcatcc 13442021  T
Q  242 acccggatcccattg 256  Q
     || |||||||||||    
T  13442022 tcctggatcccattg 13442036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 134 - 256
Target Start/End: Complemental strand, 23989035 - 23988913
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 233  Q
    ||||||||||| |||||||| |||||||||||||||||| |  |||||||| ||||| ||||||||||||| |||||||  |||||| |||||| |||||    
T  23989035 ccctcctacattagtctcctacacctctgaagaactcgaccttgagttctcgttttggtaaagagcttcccttgcatgttaactccttcaatgagcaaga 23988936  T
Q  234 gcacacccacccggatcccattg 256  Q
    |  |||||  | |||||||||||    
T  23988935 gatcacccttctggatcccattg 23988913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 8966030 - 8966095
Alignment:
Q  137 tcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttc 202  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||    
T  8966030 tcctacatcagtctcctccacctctgaagaactcgaccctgagttctcattctgataaagagcttc 8966095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 134 - 234
Target Start/End: Complemental strand, 10927914 - 10927814
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 233  Q
    |||||||||| ||||||||||||| |||||||||||||| |||||||||||||| | |||||||| ||| |||||| || ||||| | |||| |||||||    
T  10927914 ccctcctacaacagtctcctccacttctgaagaactcgaccccgagttctcattctaataaagagtttctcatgcaagttgactcttacaataaacaaga 10927815  T
Q  234 g 234  Q
    |    
T  10927814 g 10927814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 137 - 232
Target Start/End: Complemental strand, 40805666 - 40805571
Alignment:
Q  137 tcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaag 232  Q
    ||||||||||||||||||||||| | ||||| |||| ||||||||||  || |||||| ||| ||| ||||||||  ||||||||| |||||||||    
T  40805666 tcctacatcagtctcctccacctttaaagaagtcgaccccgagttcttgttctgataaggagtttcacatgcatgatgactcctccgatgaacaag 40805571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 31915332 - 31915247
Alignment:
Q  149 ctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgca-tgtcgactcctccaatgaacaagag 234  Q
    |||||||||||||||||||||| | ||||||||||| || | || ||||| || |||| || ||| |||||||||||||||||||||    
T  31915332 ctcctccacctctgaagaactcaaccccgagttctcgttctaat-aagagttttccattcattgttgactcctccaatgaacaagag 31915247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 31522644 - 31522576
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttc 202  Q
    |||||||||||||| | | ||||||||||||||||||||   ||||||||| || |||||| |||||||    
T  31522644 ccctcctacatcagccccttccacctctgaagaactcgacttcgagttctcgttctgataatgagcttc 31522576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 134 - 255
Target Start/End: Complemental strand, 18203246 - 18203126
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 233  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || |||||||||| |||||||| |||||||||||    
T  18203246 ccctcctacatcagtctcctccacctctgaagaactcga-cccgagttctcattttaataaagagttttccatgcatgttgactcctcgaatgaacaaga 18203148  T
Q  234 gcacacccacccggatcccatt 255  Q
    |  ||||| ||  |||||||||    
T  18203147 gaccaccctcctagatcccatt 18203126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 134 - 257
Target Start/End: Complemental strand, 22873622 - 22873499
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 233  Q
    |||||||||||||||||| ||||||||| | ||| |||||||| |||||||||| |||||||||||||||||||||| | ||||||||||||||||||||    
T  22873622 ccctcctacatcagtctcatccacctctaaggaaatcgatcccaagttctcattatgataaagagcttcccatgcatattgactcctccaatgaacaaga 22873523  T
Q  234 gcacacccacccggatcccattgg 257  Q
    |   |||| || ||||||||||||    
T  22873522 gacaaccctcctggatcccattgg 22873499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 134 - 234
Target Start/End: Original strand, 34374062 - 34374162
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 233  Q
    ||||| ||||| |||||||||||| |||||||||||| | ||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||    
T  34374062 ccctcttacattagtctcctccacatctgaagaactccaccccgagttctcattttgataaagagattcccatgcatgttgactcttccaatgaacaaga 34374161  T
Q  234 g 234  Q
    |    
T  34374162 g 34374162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 134 - 234
Target Start/End: Complemental strand, 22889065 - 22888965
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 233  Q
    |||||||||||||||||| ||||||||| | ||| | || ||| |||||||||| |||||||||||||||||||||| | ||||||||||||||||||||    
T  22889065 ccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgcatattgactcctccaatgaacaaga 22888966  T
Q  234 g 234  Q
    |    
T  22888965 g 22888965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 134 - 254
Target Start/End: Complemental strand, 12881834 - 12881715
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 233  Q
    ||||||||||||||||||||||||||  ||||||||||| |||||| |||||||  ||| |||| |||||||||||||| |||| || ||||||||||||    
T  12881834 ccctcctacatcagtctcctccacctaagaagaactcgaccccgagctctcattccgat-aagaacttcccatgcatgttgacttcttcaatgaacaaga 12881736  T
Q  234 gcacacccacccggatcccat 254  Q
    |  ||||| || |||||||||    
T  12881735 gaccaccctcctggatcccat 12881715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 134 - 234
Target Start/End: Complemental strand, 22910608 - 22910508
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 233  Q
    |||||||||||||||||| ||||||||| | ||| | || ||| |||||||||| ||||||||||||||||||| || | ||||||||||||||||||||    
T  22910608 ccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgtatattgactcctccaatgaacaaga 22910509  T
Q  234 g 234  Q
    |    
T  22910508 g 22910508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 3542009 - 3541947
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 196  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  3542009 ccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 3541947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 30049679 - 30049617
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 196  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  30049679 ccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 30049617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 30051966 - 30051904
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 196  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  30051966 ccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 30051904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 234
Target Start/End: Original strand, 12778684 - 12778782
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 233  Q
    ||||| |||||||||||||||||||||||||||||| || ||| | |||||||| ||||  |||| ||||  ||||||| ||||||||||||||||||||    
T  12778684 ccctcttacatcagtctcctccacctctgaagaacttgaccccaaattctcattctgat--agagtttcctttgcatgttgactcctccaatgaacaaga 12778781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 18720069 - 18720019
Alignment:
Q  145 cagtctcctccacctctgaagaactcgatcccgagttctcattttgataaa 195  Q
    ||||||||||||||| |||||||||||| ||||| |||| |||||||||||    
T  18720069 cagtctcctccacctttgaagaactcgaccccgaattctaattttgataaa 18720019  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 32361169 - 32361109
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataa 194  Q
    ||||||||||| ||||| |||||||||| || ||||||| | |||||||||||| ||||||    
T  32361169 ccctcctacattagtcttctccacctctaaaaaactcgacctcgagttctcattatgataa 32361109  T

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Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 8047663 - 8047718
Alignment:
Q  142 catcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaaga 197  Q
    |||| ||||||||||||||||||||||| || |||||||||| ||| | |||||||    
T  8047663 catcggtctcctccacctctgaagaacttgaccccgagttctaattctaataaaga 8047718  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 136 - 164
Target Start/End: Complemental strand, 11194426 - 11194398
Alignment:
Q  136 ctcctacatcagtctcctccacctctgaa 164  Q
    |||||||||||||||||||||||||||||    
T  11194426 ctcctacatcagtctcctccacctctgaa 11194398  T

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Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 142 - 256
Target Start/End: Original strand, 21845225 - 21845335
Alignment:
Q  142 catcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagagcacaccc 241  Q
    |||||||||  |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    | ||    
T  21845225 catcagtctgttccacctctgaagaactcgaccccgagttctcattctgataaagagcttcccatgcatgttgactcctccaatgaacaaga----aacc 21845320  T
Q  242 acccggatcccattg 256  Q
    |||||||||||||||    
T  21845321 acccggatcccattg 21845335  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 134 - 255
Target Start/End: Complemental strand, 18252230 - 18252109
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 233  Q
    ||||||| |||||| |||||| |||||||||||||| || |||||||||||||| ||||||| ||||| |||||||||| ||||||||||||| ||||||    
T  18252230 ccctcctgcatcagcctcctctacctctgaagaacttgaccccgagttctcattatgataaacagctttccatgcatgtggactcctccaatggacaaga 18252131  T
Q  234 gcacacccacccggatcccatt 255  Q
    |  ||||| || | ||||||||    
T  18252130 gaccaccctcctgaatcccatt 18252109  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 19677629 - 19677684
Alignment:
Q  141 acatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 196  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| || ||||||    
T  19677629 acatcagtctcctccacctctgaagaactcgaccccgagttctcatctttataaag 19677684  T

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Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 142 - 234
Target Start/End: Complemental strand, 22716416 - 22716324
Alignment:
Q  142 catcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 234  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  22716416 catcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgttgactcctccaatgaacaagag 22716324  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 22988801 - 22988893
Alignment:
Q  142 catcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 234  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  22988801 catcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgttgactcctccaatgaacaagag 22988893  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 6659656 - 6659751
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaaca 230  Q
    ||||||||||||||||||||| ||||||||||||||||| ||| | ||||||| |||||||||||||||||||| || | ||||||||||| |||||    
T  6659656 ccctcctacatcagtctcctctacctctgaagaactcga-cccaaattctcatcttgataaagagcttcccatgaatattgactcctccaaagaaca 6659751  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 134 - 234
Target Start/End: Complemental strand, 10494734 - 10494634
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 233  Q
    ||||| ||||||||||| ||| || |||||||||||||| | | |||||| ||  ||||||| |||||||||||||||||||||||||||||||||||||    
T  10494734 ccctcatacatcagtcttctctacttctgaagaactcgacctcaagttctgatcctgataaatagcttcccatgcatgtcgactcctccaatgaacaaga 10494635  T
Q  234 g 234  Q
    |    
T  10494634 g 10494634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 136 - 234
Target Start/End: Complemental strand, 7635098 - 7635000
Alignment:
Q  136 ctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 234  Q
    |||| |||||||||||||||| ||||||||||||||| ||| | |||||||| | ||||| |||| ||||||||||| ||||||||| |||||||||||    
T  7635098 ctcccacatcagtctcctccatctctgaagaactcgaccccaaattctcattctaataaaaagctccccatgcatgttgactcctccgatgaacaagag 7635000  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 13085421 - 13085483
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 196  Q
    |||||||||||||||||| |||| ||||||||||||||| ||||||||||||| |||||||||    
T  13085421 ccctcctacatcagtctcttccatctctgaagaactcgaccccgagttctcatcttgataaag 13085483  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 9260367 - 9260297
Alignment:
Q  142 catcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgt 212  Q
    ||||| ||||||| || ||| |||||||||| |||||||||| ||||||||||||| |||| |||| ||||    
T  9260367 catcaatctcctctacgtctaaagaactcgaccccgagttcttattttgataaagaacttctcatggatgt 9260297  T

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Target: scaffold0054 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 136 - 256
Target Start/End: Complemental strand, 49122 - 49002
Alignment:
Q  136 ctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgat-aaagagcttcccatgcatgtcgactcctccaatgaacaagag 234  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||| ||| |||| ||||| ||| |||||||||| ||||| ||| ||||||| |||    
T  49122 ctcctacatcagtctcctccacctctgaagaactcaaccccgagttcttattctgataaaagaactt-ccatgcatgttgactcttcctatgaacacgag 49024  T
Q  235 cacacccacccggatcccattg 256  Q
     |||||||||||||||||||||    
T  49023 aacacccacccggatcccattg 49002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 134 - 234
Target Start/End: Complemental strand, 10461 - 10361
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 233  Q
    |||||||||||||||||| ||||||||| | ||| | || ||| |||||||||| ||||||||||||||||||| || | ||||||||||||||||||||    
T  10461 ccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgaatattgactcctccaatgaacaaga 10362  T
Q  234 g 234  Q
    |    
T  10361 g 10361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 136 - 256
Target Start/End: Complemental strand, 37523 - 37404
Alignment:
Q  136 ctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgat-aaagagcttcccatgcatgtcgactcctccaatgaacaagag 234  Q
    ||||||||||||||||||||||||||||||||||||| ||| | |||| ||| |||| ||||||||| |||||||||| ||||| ||| ||||||  |||    
T  37523 ctcctacatcagtctcctccacctctgaagaactcga-cccaaattcttattctgataaaagagctt-ccatgcatgttgactcttcctatgaaccggag 37426  T
Q  235 cacacccacccggatcccattg 256  Q
     || |||| |||||||||||||    
T  37425 aacgcccaaccggatcccattg 37404  T

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Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 135 - 256
Target Start/End: Original strand, 365879 - 365999
Alignment:
Q  135 cctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 234  Q
    |||||| ||||| ||||||||||||||||||||||||| | ||||||||| |||||||||||||||| ||||| |||| ||||| ||||||||||| |||    
T  365879 cctcctgcatcaatctcctccacctctgaagaactcgacctcgagttctcgttttgataaagagctt-ccatgtatgttgactcttccaatgaacaggag 365977  T
Q  235 cacacccacccggatcccattg 256  Q
      ||||| || |||||||||||    
T  365978 accaccctccgggatcccattg 365999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 134 - 256
Target Start/End: Original strand, 8536658 - 8536780
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 233  Q
    |||||||||||||| ||| ||||||||| ||||||||||  ||||||||| ||| ||||||| || ||| |||  |||| ||||| ||||||||||||||    
T  8536658 ccctcctacatcagcctcttccacctctaaagaactcgactccgagttcttattctgataaaaagtttctcatatatgttgactcttccaatgaacaaga 8536757  T
Q  234 gcacacccacccggatcccattg 256  Q
    |  ||||| || |||||||||||    
T  8536758 gatcaccctcctggatcccattg 8536780  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 3064066 - 3064116
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctc 184  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  3064066 ccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 3064116  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 150 - 232
Target Start/End: Original strand, 2473000 - 2473084
Alignment:
Q  150 tcctccacctctgaagaactcgatcccgagttctcattttgat--aaagagcttcccatgcatgtcgactcctccaatgaacaag 232  Q
    |||||||| | | |||||||||| |||||||||||||| ||||  ||| | |||| ||||||||| |||| ||||||||||||||    
T  2473000 tcctccacttttaaagaactcgaccccgagttctcattctgataaaaaaaacttctcatgcatgttgacttctccaatgaacaag 2473084  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 24516698 - 24516743
Alignment:
Q  137 tcctacatcagtctcctccacctctgaagaactcgatcccgagttc 182  Q
    |||||||||| |||||||||| || ||||||||||| |||||||||    
T  24516698 tcctacatcaatctcctccacttcagaagaactcgaccccgagttc 24516743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 45943 - 46005
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 196  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  45943 ccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 46005  T

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Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 134 - 234
Target Start/End: Complemental strand, 145544 - 145444
Alignment:
Q  134 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgca-tgtcgactcctccaatgaacaag 232  Q
    ||||||||||||||||||||||||||| |||||||| || |||||||| | ||| |||||||||| |  || | || ||| ||||||| |||||||||||    
T  145544 ccctcctacatcagtctcctccacctcagaagaacttga-cccgagttattattctgataaagagttgtccgttcattgttgactccttcaatgaacaag 145446  T
Q  233 ag 234  Q
    ||    
T  145445 ag 145444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 234
Target Start/End: Original strand, 144179 - 144282
Alignment:
Q  134 ccctcctacatcagt---ctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgca-tgtcgactcctccaatgaac 229  Q
    ||||||| |||||||   |||||||| |||||||||||| || |||||||||| ||| |||||||||| |  |||| || ||||||||||| | ||||||    
T  144179 ccctcctgcatcagtctcctcctccatctctgaagaacttga-cccgagttcttattctgataaagagttgtccattcattgtcgactccttcgatgaac 144277  T
Q  230 aagag 234  Q
    |||||    
T  144278 aagag 144282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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