View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_61 (Length: 299)
Name: NF1441_low_61
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_61 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 47918429 - 47918693
Alignment:
| Q |
11 |
cagagacaaaataggggagatgaacctgttgagcctataaaggttcgaaaagcactcaaagggtgaccattccggcataattcaggtactaattaagctt |
110 |
Q |
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| T |
47918429 |
cagagacaaaataggggagatgaacctgttgagcctataaaggttcgaaaagcactcaaagggtgaccattccggcataattcaggtactaattaagctt |
47918528 |
T |
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| Q |
111 |
ttgaaattgctgctgcaatctatgatattataaaaaattgcagtcagagtattagtaatataaatcaagattatannnnnnnctttccattttct-cacg |
209 |
Q |
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| T |
47918529 |
ttgaaattgctgctgcaatctatgatattataaaaaattgcagtcagagtattagtaatataaatcaagattata--------ttt---ttttatgtata |
47918617 |
T |
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| Q |
210 |
tttatttctgtccaattctatctgaagtgaaagagtttttatgtataaactcttttttattgccggtgtattcttt |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918618 |
tttatttctgtccaattctatctgaagtgaaagagtttttatgtataaactcttttttattgccggtgtattcttt |
47918693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 61 - 285
Target Start/End: Complemental strand, 29918694 - 29918473
Alignment:
| Q |
61 |
agcactcaaagggtgaccattccggcataattcaggtactaatta---agcttttgaaattgctgctgcaatctatgatattataaaaaattgcagtcag |
157 |
Q |
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||||||||| |||||||||| | ||||||||||||||||||| || | |||||||||||||||||| |||||||| ||||||||||| | |||| || |
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| T |
29918694 |
agcactcaaggggtgaccatgctggcataattcaggtactaagtactaaacttttgaaattgctgctgtgatctatgaaattataaaaaaattcagttag |
29918595 |
T |
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| Q |
158 |
agtattagtaatataaatcaagattatannnnnnnctttccattttctcacgtttatttctgtccaattctatctgaagtgaaagagtttttatgtataa |
257 |
Q |
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| T |
29918594 |
agaattagtaatataaatcaagattcaaattat---tttccattttctcacacctatttatgtccaattctatgtgaagtg-aagactttttatgtataa |
29918499 |
T |
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| Q |
258 |
actcttttttattgccggtgtattcttt |
285 |
Q |
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|||| ||||||||||| |||||||||| |
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| T |
29918498 |
actc--ttttattgccgatgtattcttt |
29918473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 29918803 - 29918750
Alignment:
| Q |
11 |
cagagacaaaataggggagatgaacctgttgagcctataaaggttcgaaaagca |
64 |
Q |
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| T |
29918803 |
cagagacaaaataggggtgatgaacctgttgagcctataaaggttcaaaaagca |
29918750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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