View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1441_low_62 (Length: 294)
Name: NF1441_low_62
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_62 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 35523532 - 35523793
Alignment:
| Q |
20 |
tcatgactgcatggttagcatacagccgtggagtaactccatccaaggatatcacaaaaacatcaaccttcggagttttcaatgtatggcaatacgagaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35523532 |
tcatgactgcatggttagcatacagccgtggagtaactccatccaaggatgtcacaaaaacatcaaccttcggagttttcaatgtatggcaatacgagaa |
35523631 |
T |
|
| Q |
120 |
taagcttccgattgaatacggcgccgttggaccggagagtttcgccttcgatcctcacggtgaaggaccttatactggagtttccgatggacacatcatc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35523632 |
taagcttccgattgaatacggcgccgttggaccggagagtttcgccttcgatcctcacggtgaaggaccttatactggagtttccgatggacacatcatc |
35523731 |
T |
|
| Q |
220 |
aaatggcaccgtcgtgaaaaccgttgggaggactttgccgtcacttcttctccacacaggtt |
281 |
Q |
| |
|
|||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35523732 |
aaatggcaccatcatcaaaaccgttgggaggactttgccgtcacttcttctccacacaggtt |
35523793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 35517934 - 35518195
Alignment:
| Q |
20 |
tcatgactgcatggttagcatacagccgtggagtaactccatccaaggatatcacaaaaacatcaaccttcggagttttcaatgtatggcaatacgagaa |
119 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||||||||| ||||| |||||||| |||||||||||| | |||| ||||||||||||| |
|
|
| T |
35517934 |
tcatgactgcatggttagcatacaaccgtggagtaacaccatccaaggatgtcacagaaacatcagccttcggagtttccgatgtttggcaatacgagag |
35518033 |
T |
|
| Q |
120 |
taagcttccgattgaatacggcgccgttggaccggagagtttcgccttcgatcctcacggtgaaggaccttatactggagtttccgatggacacatcatc |
219 |
Q |
| |
|
|| | |||||||||| ||| |||||||||||||||||| | |||||||||||| ||||||||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
35518034 |
tatggttccgattgataacgatgccgttggaccggagagtcttgccttcgatcctaacggtgaaggaccttataccggcatttccaatggacacatcatc |
35518133 |
T |
|
| Q |
220 |
aaatggcaccgtcgtgaaaaccgttgggaggactttgccgtcacttcttctccacacaggtt |
281 |
Q |
| |
|
||||||||||||| ||| |||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
35518134 |
aaatggcaccgtcatgagaaccgttgggtggactttgccgtcacttcttcttcacacaggtt |
35518195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University