View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1441_low_69 (Length: 286)
Name: NF1441_low_69
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_69 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 329776 - 330034
Alignment:
| Q |
12 |
cacagaaaagaaacatgaaacaattttcattgagctcaatgcttaaacacacttcaatcctattagtgcagagtaaagtcttcttagaagcaggcatcta |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
329776 |
cacagaaaagaaacatgaaacaattttcattgagctcaatgcttaaacacacttcaatcctattagtgcagagtaaagtcttcttagaagcaggcatcta |
329875 |
T |
|
| Q |
112 |
ataggcagcaacagcagagagcagcacaactgcaccaatatacaaacgcaaacaagttagtacgagtagtgaaaaatatacatacaattcgaagcagcaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
329876 |
ataggcagcaacagcagagagcagcacaactgcaccaatatacaaacgcaaacaagttagtacgagtggtgaaaaatatatatacaattcgaagcagcaa |
329975 |
T |
|
| Q |
212 |
acatacaatatcttcttcatgcatatgatctatttatctgtctatcatgacatgaacat |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
329976 |
acatacaatatcttcttcatgcatatgatctatttatctgtctatcatgacatgaacat |
330034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 48030662 - 48030582
Alignment:
| Q |
77 |
gtgcagagtaaagtcttcttagaagcaggcatctaataggcagcaacagcagagagcagcacaactgcaccaatatacaaa |
157 |
Q |
| |
|
||||| ||||| ||||||| | ||||| ||||| || || |||||||||||||||||||| | ||||| |||| |||||| |
|
|
| T |
48030662 |
gtgcaaagtaatgtcttctcaaaagcatgcatccaagagacagcaacagcagagagcagccaagctgcaacaatttacaaa |
48030582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University