View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441_low_7 (Length: 546)

Name: NF1441_low_7
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441_low_7
NF1441_low_7
[»] chr6 (2 HSPs)
chr6 (16-500)||(8594490-8594974)
chr6 (16-96)||(8579348-8579428)
[»] chr3 (2 HSPs)
chr3 (251-312)||(27010049-27010110)
chr3 (251-280)||(3015643-3015672)
[»] chr1 (2 HSPs)
chr1 (240-302)||(8856831-8856893)
chr1 (240-304)||(15794120-15794184)
[»] chr7 (2 HSPs)
chr7 (28-96)||(19868517-19868585)
chr7 (151-213)||(19868746-19868807)


Alignment Details
Target: chr6 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 16 - 500
Target Start/End: Original strand, 8594490 - 8594974
Alignment:
Q  16 caaaccgccaacatgaaaagacaaggcaggttgtactttgagttacttatattcaatgacatattttcctctcaattactttaaatcaaggattatatat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8594490 caaaccgccaacatgaaaagacaaggcaggttgtactttgagttacttatattcaatgacatattttcctctcaattactttaaatcaaggattatatat 8594589  T
Q  116 ggaatttacatagtgaagcatcaaggattaaaaacatgattagcatttgcaagtaagagttattgaataaaaccttgaataaggcaatacaataatacca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8594590 ggaatttacatagtgaagcatcaaggattaaaaacatgattagcatttgcaagtaagagttattgaataaaaccttgaataaggcaatacaataatacca 8594689  T
Q  216 tgtaattcttaaaaggggattctgtagcactatattgtagtggaatttgaacacatcactattttatgcgatttgcgattgacaacactattgataagca 315  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8594690 tgtaattcttaaaagggtattctgtagcgctatattgtagtggaatttgaacacatcactattttatgtgatttgcgattgacaacactattgataagca 8594789  T
Q  316 agctcatgcgcgcgaaaattgttttacatattgcatttcaacttcacaaaaaccttatgaaatttatctacggaatatttatgaaccatcacggcgtcat 415  Q
    ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8594790 agcgcatgcgcgcgaaaattgttttacatattgcatttcaacctcacaaaaaccttatgaaatttatttacggaatatttatgaaccatcacggcgtcat 8594889  T
Q  416 tgctataatcttttctgttagtttgcatcctttgttcacgaatgtagattttttcatggaacatagcaagcttgtcactcgacag 500  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8594890 tgctataatcttttctgttaatttgcatcctttgttcacgaatgtagattttttcatggaacatagcaagcttgtcactcgacag 8594974  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 8579428 - 8579348
Alignment:
Q  16 caaaccgccaacatgaaaagacaaggcaggttgtactttgagttacttatattcaatgacatattttcctctcaattactt 96  Q
    ||||||| ||||||||||||  |||||||| |||||| |||||||||| ||| |||||||||||||| || ||||||||||    
T  8579428 caaaccgtcaacatgaaaaggtaaggcagggtgtactctgagttacttttatgcaatgacatatttttctttcaattactt 8579348  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 312
Target Start/End: Original strand, 27010049 - 27010110
Alignment:
Q  251 tgtagtggaatttgaacacatcactattttatgcgatttgcgattgacaacactattgataa 312  Q
    |||||| ||||||||||| |||||||||| |||| ||||| |||||||||||||||||||||    
T  27010049 tgtagtagaatttgaacaaatcactatttaatgcaatttgtgattgacaacactattgataa 27010110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 280
Target Start/End: Original strand, 3015643 - 3015672
Alignment:
Q  251 tgtagtggaatttgaacacatcactatttt 280  Q
    ||||||||||||||||||||||||||||||    
T  3015643 tgtagtggaatttgaacacatcactatttt 3015672  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 8856831 - 8856893
Alignment:
Q  240 tagcactatattgtagtggaatttgaacacatcactattttatgcgatttgcgattgacaaca 302  Q
    ||||||| ||||||||||||||||||||| | | |||||| ||||||| || |||||||||||    
T  8856831 tagcactgtattgtagtggaatttgaacaaaccgctatttcatgcgatctgtgattgacaaca 8856893  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 15794120 - 15794184
Alignment:
Q  240 tagcactatattgtagtggaatttgaacacatcactattttatgcgatttgcgattgacaacact 304  Q
    |||||||||  ||||||||||||  |||| ||||||||||| |||| | ||||||||||| ||||    
T  15794120 tagcactattgtgtagtggaattcaaacaaatcactattttctgcggtatgcgattgacagcact 15794184  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 19868517 - 19868585
Alignment:
Q  28 atgaaaagacaaggcaggttgtactttgagttacttatattcaatgacatattttcctctcaattactt 96  Q
    ||||||||  |||||||| ||||||||||||||||| ||  |||||||||||||| |  ||||||||||    
T  19868517 atgaaaaggtaaggcagggtgtactttgagttacttttaaacaatgacatatttttccttcaattactt 19868585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 19868746 - 19868807
Alignment:
Q  151 atgattagcatttgcaagtaagagttattgaataaaaccttgaataaggcaatacaataatac 213  Q
    |||||||||||||| |||||| ||| |||||   || ||||||||||||||||||||||||||    
T  19868746 atgattagcatttggaagtaaaagtaattgagccaa-ccttgaataaggcaatacaataatac 19868807  T

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