View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441_low_72 (Length: 279)

Name: NF1441_low_72
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441_low_72
NF1441_low_72
[»] chr7 (7 HSPs)
chr7 (1-279)||(39364823-39365107)
chr7 (1-276)||(39336722-39337005)
chr7 (1-279)||(39348016-39348305)
chr7 (126-279)||(39565578-39565733)
chr7 (187-276)||(39539304-39539393)
chr7 (134-279)||(39548670-39548819)
chr7 (222-272)||(39590197-39590247)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 9e-79; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 39365107 - 39364823
Alignment:
Q  1 aagaacctttcatacgaaaacatatcaaaatcatcagattatttatattttttgatgattagattcaaatttggtactccggatcttacaacactcacgc 100  Q
    |||||||||||| | |||||||||||||||||||  || |||||||||||||||| ||||| | ||||||| ||||||||||| |||||||||||||| |    
T  39365107 aagaacctttcacaagaaaacatatcaaaatcatttgactatttatattttttgacgattacaatcaaattcggtactccggagcttacaacactcacac 39365008  T
Q  101 ac--tgcacaccaaccacttgtaccatacctcggtggtacatcagattatttatatgataag----tcatagaaaatgaacatataagatagaaaaaaga 194  Q
    ||  ||||||||||||||||| || | ||||| ||| ||||||| |||||||| ||||||||    ||||||||||||||||||||| |||| ||||| |    
T  39365007 acgctgcacaccaaccacttgcactagacctcagtgatacatcaaattatttaaatgataaggaagtcatagaaaatgaacatataaaatagtaaaaaaa 39364908  T
Q  195 acttacatgtttccatttattcccaaggaactcattatttaccatggcattttgtgcatacatcataggtgatatccaaaatccc 279  Q
     |||||||||||||||||||| ||||||||||||||| |||||| |||||||||| ||||||||| |||||||||||||||||||    
T  39364907 tcttacatgtttccatttatttccaaggaactcattaattaccacggcattttgtccatacatcaaaggtgatatccaaaatccc 39364823  T

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Target: chr7; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 39337005 - 39336722
Alignment:
Q  1 aagaacctttcatacgaaaacatatcaaaatcatcagattatttatattttttgatgatta-gattcaaatttggtactccggatcttacaacactcacg 99  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| || || ||||||| |||||||||||  |||||||||||||     
T  39337005 aagaacctttcataggaaaacatatcaaaatcatcagactatttatattttttgatgagtaagaatcaaattcggtactccggagtttacaacactcaca 39336906  T
Q  100 cactgca--caccaaccacttgtaccatacctcggtggtacatcagattatttatatgataag----tcatagaaaatgaacatataagatagaaaaaag 193  Q
    |||   |  |||||| |||||| |||| |||||||| ||||| |||||||||||||||||| |    ||||||||||||||||||| | |||| ||||      
T  39336905 cacacaatacaccaagcacttgcaccagacctcggtagtacaccagattatttatatgatatggaattcatagaaaatgaacatatgaaatagtaaaaga 39336806  T
Q  194 aa-cttacatgtttccatttattcccaaggaactcattatttaccatggcattttgtgcatacatcataggtgatatccaaaat 276  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  39336805 aagcttacatgtttccatttattcccaaggaactcattatttaccatggcattttgtccatacatcaaaggtgatatccaaaat 39336722  T

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Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 39348305 - 39348016
Alignment:
Q  1 aagaacctttcatacgaaaacatatcaaaatcatcagattatttatattttttgatgatta-gattcaaatttggtactccggatcttacaacactcacg 99  Q
    |||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||| || || | ||||| ||||||| |||  |||||||||||||     
T  39348305 aagaacctttcataagaaatcatatcaaaatcatcagactatttatattttttgatgagtaagaattaaattcggtactctggagtttacaacactcaca 39348206  T
Q  100 cactgcac--accaaccacttgtaccatacctcggtggtacatcagattatttatatgataag----tcatagaaaatgaacatataagata-gaaa--- 189  Q
    |||   ||  ||||| |||||| |||| |||| |||||||||  |||| ||||||||||||||    ||| ||||||||||||||| | ||| ||||       
T  39348205 cacacaacgaaccaagcacttgcaccagaccttggtggtacacaagatgatttatatgataaggaagtcagagaaaatgaacatatga-atatgaaatag 39348107  T
Q  190 -aaagaacttacatgtttccatttattcccaaggaactcattatttaccatggcattttgtgcatacatcataggtgatatccaaaatccc 279  Q
     |||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||    
T  39348106 taaaagacttacatgtttccatttattcccaaggaactcattaattaccatggcattttgtccatacatcaaaggtgatatccaaaatccc 39348016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 126 - 279
Target Start/End: Original strand, 39565578 - 39565733
Alignment:
Q  126 acctcggtggtacatcagattatttatatgataag----tcatagaaaatgaacatataagatagaaaaaagaacttacatgtttccatttattcccaag 221  Q
    |||| ||||||||||| ||||||||||||||||||    ||| |||||||||| |||||| | || ||||| ||||||||||||||||||||||||||||    
T  39565578 accttggtggtacatcggattatttatatgataaggaagtcacagaaaatgaatatataaaa-agtaaaaa-aacttacatgtttccatttattcccaag 39565675  T
Q  222 gaactcattatttaccatggcattttgtgcatacatcataggtgatatccaaaatccc 279  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  39565676 gaactcattatttaccatggcattttgtccatacatcataggtgatatccagaatccc 39565733  T

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Target: chr7; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 187 - 276
Target Start/End: Original strand, 39539304 - 39539393
Alignment:
Q  187 aaaaaagaacttacatgtttccatttattcccaaggaactcattatttaccatggcattttgtgcatacatcataggtgatatccaaaat 276  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39539304 aaaaaaaaacttacacgtttccatttattcccaaggaactcattatttaccatggcattttgtgcatacatcataggtgatatccaaaat 39539393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 134 - 279
Target Start/End: Original strand, 39548670 - 39548819
Alignment:
Q  134 ggtacatcagattatttatatgataag----tcatagaaaatgaaca-tataagatagaaaaaagaacttacatgtttccatttattcccaaggaactca 228  Q
    |||||||||| ||||||||||||||||    || |||||||| || | || || |||| ||||| |||||||||||||||||||||||||||||||||||    
T  39548670 ggtacatcaggttatttatatgataaggaagtcgtagaaaataaaaaataaaaaatagtaaaaa-aacttacatgtttccatttattcccaaggaactca 39548768  T
Q  229 ttatttaccatggcattttgtgcatacatcataggtgatatccaaaatccc 279  Q
    |||||||||||||| |||||| |||||||||| ||||||||||||||||||    
T  39548769 ttatttaccatggcgttttgtccatacatcatgggtgatatccaaaatccc 39548819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 39590197 - 39590247
Alignment:
Q  222 gaactcattatttaccatggcattttgtgcatacatcataggtgatatcca 272  Q
    |||||| ||||| || | |||||||||||||||||||||||||||||||||    
T  39590197 gaactcgttattcactacggcattttgtgcatacatcataggtgatatcca 39590247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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