View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_75 (Length: 273)
Name: NF1441_low_75
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_75 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 1458930 - 1458687
Alignment:
| Q |
14 |
aaatggcagaaaactacgcaactaacatcgatacaaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgcatgct |
113 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1458930 |
aaatggcagaaaactacgcgactaacattgatacaaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgtatgct |
1458831 |
T |
|
| Q |
114 |
caattttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataatttggatgtccaga |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1458830 |
caattttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataatctggatgtccaga |
1458731 |
T |
|
| Q |
214 |
ttctacaactttagacactcctaatcctgtcaatggctgcaatt |
257 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1458730 |
ttctacaactttagacactcctaatcctgtcaatggctgcaatt |
1458687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 2428637 - 2428394
Alignment:
| Q |
14 |
aaatggcagaaaactacgcaactaacatcgatacaaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgcatgct |
113 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2428637 |
aaatggcagaaaactacgcgactaacattgatacaaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgtatgct |
2428538 |
T |
|
| Q |
114 |
caattttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataatttggatgtccaga |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |||||||||||| |
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| T |
2428537 |
caattttgaaaagtatttgagctgcagggaccaaactatactcttcccagttagtaataccccaaactaaatcatctttcttataatctggatgtccaga |
2428438 |
T |
|
| Q |
214 |
ttctacaactttagacactcctaatcctgtcaatggctgcaatt |
257 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2428437 |
ttctacaactttagacactcctaatcctgtcaatggctgcaatt |
2428394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 48 - 231
Target Start/End: Original strand, 2498021 - 2498204
Alignment:
| Q |
48 |
aaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaaaagtatttgagctgcagggaccaa |
147 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || ||||||||| |
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| T |
2498021 |
aaattgaaattgttgaaaacataccgagtattccagtatagtaggaaagtgggacatcagtgtgctcaattttgaaaagtatttgagatgaagggaccaa |
2498120 |
T |
|
| Q |
148 |
actatactcttcccatttagtcattccccaaactaaatcatctttcttataatttggatgtccagattctacaactttagacac |
231 |
Q |
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|| ||||||||||||||| | |||||||||||||||| ||| |||||||| |||||||| ||||| | ||||||||||| |
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| T |
2498121 |
gctgtactcttcccatttacagaatccccaaactaaatcaccttccttataatcaggatgtcctgattcaaggactttagacac |
2498204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 257
Target Start/End: Complemental strand, 2431616 - 2431373
Alignment:
| Q |
13 |
aaaatggcagaaaactacgcaactaacatcgatacaaattgaaattgttgaatacata--ccgagaattccagtatagtaggaaagtgggacatctgcat |
110 |
Q |
| |
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||||||| |||||||||||| | ||| ||| ||| ||||||||||||||||| |||| || ||||| || | || ||||||||||||||||| | |
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| T |
2431616 |
aaaatggaagaaaactacgcgattaatatcaatataaattgaaattgttgaacgcatataccaagaatcccgatgtaataggaaagtgggacatcattgt |
2431517 |
T |
|
| Q |
111 |
gctcaattttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataatttggatgtcc |
210 |
Q |
| |
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||||||||||| | | || || || |||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| ||||||||| |
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| T |
2431516 |
gctcaattttgtaca---ttccagttgtagggaccaaactatactcttcccagttagtaataccccaaactaaatcatctttcttataatctggatgtcc |
2431420 |
T |
|
| Q |
211 |
agattctacaactttagacactcctaatcctgtcaatggctgcaatt |
257 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| ||||||||||| |
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| T |
2431419 |
agattctacaactttagacactccaaaacctgtcagtggctgcaatt |
2431373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 48 - 231
Target Start/End: Original strand, 2517831 - 2518014
Alignment:
| Q |
48 |
aaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaaaagtatttgagctgcagggaccaa |
147 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||| || ||||||||||||||||||||||||||||||| ||| |
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| T |
2517831 |
aaattgaaattgttgaatacataccaagaattccagtatagtacgaaagaggaacatctgtgtgttcaattttgaaaagtatttgagctgcagggatcaa |
2517930 |
T |
|
| Q |
148 |
actatactcttcccatttagtcattccccaaactaaatcatctttcttataatttggatgtccagattctacaactttagacac |
231 |
Q |
| |
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|| ||||||||||| ||||| | ||||| ||||||||| ||| |||||||| | ||||||||||| |||||||||||||| |
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| T |
2517931 |
gctgtactcttcccaattagtaaacccccacactaaatcaccttccttataatctttgtgtccagattccacaactttagacac |
2518014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 69 - 257
Target Start/End: Complemental strand, 2434943 - 2434758
Alignment:
| Q |
69 |
taccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagt |
168 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||||||||| |||||||||||||||| || || || ||| |||||||||||||||||||||||||| |
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| T |
2434943 |
taccaagaattccggtataataggaaagtgggacatcattgtgctcaattttgaaaa---ttccagttgtaggaaccaaactatactcttcccatttagt |
2434847 |
T |
|
| Q |
169 |
cattccccaaactaaatcatctttcttataatttggatgtccagattctacaactttagacactcctaatcctgtcaatggctgcaatt |
257 |
Q |
| |
|
| | ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||| ||||||||||| |
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| T |
2434846 |
aagactccaaactgaatcatctttcttataatctggatgtccagattctacaactttagacactccaaaacctgtcagtggctgcaatt |
2434758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 64 - 231
Target Start/End: Original strand, 2506970 - 2507137
Alignment:
| Q |
64 |
atacataccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaaaagtatttgagctgcagggaccaaactatactcttcccat |
163 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || ||||| | |||||||||||||||| ||||||| || ||||||| ||| || ||||||||||| |
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|
| T |
2506970 |
atacatacctagaattccagtatagtaggaaagaggaacatcagtatgctcaattttgaaatgtatttgtgccgcagggatcaagctgtactcttcccaa |
2507069 |
T |
|
| Q |
164 |
ttagtcattccccaaactaaatcatctttcttataatttggatgtccagattctacaactttagacac |
231 |
Q |
| |
|
||||| || ||||| |||| |||| ||| |||||||| | ||||||||||| |||||||||||||| |
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|
| T |
2507070 |
ttagttatcccccacactatatcaccttccttataatctttgtgtccagattccacaactttagacac |
2507137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 48 - 231
Target Start/End: Original strand, 2513614 - 2513797
Alignment:
| Q |
48 |
aaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaaaagtatttgagctgcagggaccaa |
147 |
Q |
| |
|
||||||||||||| || ||||||| |||||||| |||||||||||||| || ||||| | ||||||||||| ||| ||||||| |||||||||| ||| |
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| T |
2513614 |
aaattgaaattgtggatcacataccaagaattcctgtatagtaggaaagaggaacatcagtgtgctcaattttaaaatgtatttgtgctgcagggatcaa |
2513713 |
T |
|
| Q |
148 |
actatactcttcccatttagtcattccccaaactaaatcatctttcttataatttggatgtccagattctacaactttagacac |
231 |
Q |
| |
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|| ||||||||||| ||||| || ||||| || | |||| ||| ||||||| | ||||||||||||| |||||||||||| |
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|
| T |
2513714 |
gctgtactcttcccaattagttatcccccacacgatatcaccttctttataatctttgtgtccagattctagaactttagacac |
2513797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 200
Target Start/End: Original strand, 50703468 - 50703557
Alignment:
| Q |
110 |
tgctcaattttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataat |
200 |
Q |
| |
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||||||||||||||||||||||||| | ||| ||||| || ||||||||||||||| | |||||||||| ||||| ||| |||||||| |
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| T |
50703468 |
tgctcaattttgaaaagtatttgagat-aaggtaccaagctgtactcttcccatttacagaatccccaaacttaatcaccttccttataat |
50703557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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