View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441_low_76 (Length: 270)

Name: NF1441_low_76
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441_low_76
NF1441_low_76
[»] chr3 (27 HSPs)
chr3 (19-255)||(10815832-10816067)
chr3 (19-240)||(10812946-10813171)
chr3 (25-239)||(38700143-38700360)
chr3 (19-194)||(17593645-17593823)
chr3 (19-194)||(17601653-17601831)
chr3 (19-194)||(8368240-8368418)
chr3 (20-182)||(8854113-8854277)
chr3 (45-183)||(94541-94682)
chr3 (42-194)||(16091834-16091990)
chr3 (58-183)||(103403-103531)
chr3 (19-183)||(14789719-14789888)
chr3 (42-194)||(16082658-16082814)
chr3 (100-182)||(18556695-18556777)
chr3 (108-194)||(15417785-15417871)
chr3 (93-182)||(26900595-26900684)
chr3 (44-193)||(14561063-14561214)
chr3 (20-182)||(8856960-8857115)
chr3 (45-193)||(14566247-14566397)
chr3 (50-188)||(19767668-19767811)
chr3 (72-158)||(10776893-10776983)
chr3 (102-194)||(15926707-15926801)
chr3 (105-170)||(26907216-26907281)
chr3 (215-255)||(2689171-2689211)
chr3 (212-255)||(19808310-19808353)
chr3 (215-255)||(11137165-11137205)
chr3 (212-255)||(20012408-20012451)
chr3 (212-255)||(33484785-33484828)
[»] chr2 (14 HSPs)
chr2 (19-239)||(3071575-3071798)
chr2 (28-194)||(4876760-4876928)
chr2 (19-194)||(23692699-23692877)
chr2 (19-194)||(23696486-23696664)
chr2 (32-188)||(29603773-29603932)
chr2 (42-182)||(7310883-7311026)
chr2 (32-182)||(45278920-45279073)
chr2 (32-182)||(45286219-45286372)
chr2 (100-182)||(5771907-5771989)
chr2 (42-182)||(26126082-26126225)
chr2 (122-181)||(2218576-2218636)
chr2 (212-255)||(8998208-8998251)
chr2 (215-255)||(8164820-8164860)
chr2 (126-188)||(1041406-1041469)
[»] scaffold0037 (1 HSPs)
scaffold0037 (17-248)||(20473-20707)
[»] chr7 (20 HSPs)
chr7 (19-239)||(11100113-11100336)
chr7 (44-194)||(15932272-15932425)
chr7 (19-188)||(23532504-23532676)
chr7 (45-194)||(11527318-11527470)
chr7 (45-194)||(11544723-11544875)
chr7 (42-194)||(44356992-44357147)
chr7 (58-194)||(44360128-44360269)
chr7 (172-255)||(550604-550684)
chr7 (19-140)||(23522322-23522445)
chr7 (17-182)||(43173424-43173592)
chr7 (102-182)||(9066411-9066492)
chr7 (112-194)||(6201988-6202071)
chr7 (102-194)||(18016904-18016997)
chr7 (112-194)||(6198714-6198797)
chr7 (212-255)||(15834917-15834960)
chr7 (215-255)||(362074-362114)
chr7 (215-255)||(12538405-12538445)
chr7 (212-255)||(5332481-5332524)
chr7 (135-183)||(23517886-23517934)
chr7 (102-158)||(30218049-30218105)
[»] chr6 (25 HSPs)
chr6 (19-239)||(17996789-17997012)
chr6 (30-239)||(25970103-25970316)
chr6 (30-239)||(25974543-25974756)
chr6 (47-240)||(18929353-18929549)
chr6 (47-248)||(19008445-19008649)
chr6 (129-239)||(13727207-13727317)
chr6 (19-187)||(20090467-20090637)
chr6 (42-194)||(19573649-19573805)
chr6 (137-239)||(13728561-13728663)
chr6 (47-194)||(23607004-23607154)
chr6 (42-194)||(11231297-11231451)
chr6 (47-182)||(16688550-16688688)
chr6 (100-183)||(19011659-19011742)
chr6 (19-137)||(13727716-13727837)
chr6 (42-182)||(8650038-8650181)
chr6 (100-182)||(8668129-8668211)
chr6 (42-158)||(19019315-19019434)
chr6 (42-194)||(19577269-19577423)
chr6 (100-182)||(22467586-22467668)
chr6 (47-151)||(16666272-16666379)
chr6 (212-255)||(22622523-22622566)
chr6 (215-255)||(4282718-4282758)
chr6 (215-255)||(11694902-11694942)
chr6 (215-255)||(34336058-34336098)
chr6 (131-194)||(24069197-24069261)
[»] chr5 (14 HSPs)
chr5 (29-195)||(40936575-40936745)
chr5 (29-188)||(40933180-40933343)
chr5 (45-194)||(8460158-8460310)
chr5 (19-182)||(26857438-26857603)
chr5 (50-160)||(26863703-26863816)
chr5 (102-194)||(20680149-20680242)
chr5 (32-162)||(38836734-38836867)
chr5 (32-162)||(38840653-38840786)
chr5 (19-94)||(32965740-32965813)
chr5 (102-194)||(27073738-27073831)
chr5 (212-255)||(40572231-40572274)
chr5 (102-182)||(19049695-19049776)
chr5 (102-194)||(20675401-20675494)
chr5 (112-194)||(37256998-37257080)
[»] chr4 (14 HSPs)
chr4 (19-194)||(23882324-23882502)
chr4 (19-194)||(27789015-27789194)
chr4 (19-194)||(23878676-23878853)
chr4 (20-182)||(10968702-10968866)
chr4 (20-182)||(10754933-10755097)
chr4 (20-182)||(10757210-10757374)
chr4 (20-182)||(10970381-10970545)
chr4 (181-238)||(24749259-24749316)
chr4 (99-194)||(7202776-7202871)
chr4 (130-194)||(28924698-28924763)
chr4 (102-194)||(30953217-30953310)
chr4 (215-255)||(722897-722937)
chr4 (131-194)||(22763078-22763142)
chr4 (119-182)||(36250884-36250948)
[»] chr8 (31 HSPs)
chr8 (28-194)||(31711100-31711268)
chr8 (44-194)||(31708895-31709048)
chr8 (19-188)||(21938576-21938748)
chr8 (42-194)||(14369718-14369873)
chr8 (42-194)||(14370269-14370424)
chr8 (130-248)||(36598421-36598539)
chr8 (32-188)||(21834802-21834960)
chr8 (42-194)||(20134924-20135079)
chr8 (42-194)||(14366129-14366284)
chr8 (32-171)||(14673343-14673485)
chr8 (58-194)||(20131799-20131940)
chr8 (19-141)||(21936066-21936191)
chr8 (128-240)||(36602611-36602723)
chr8 (32-171)||(14676549-14676691)
chr8 (58-188)||(21408365-21408497)
chr8 (58-188)||(21802857-21802989)
chr8 (32-162)||(36281309-36281442)
chr8 (101-182)||(3303208-3303289)
chr8 (100-182)||(3300140-3300222)
chr8 (212-255)||(25548070-25548113)
chr8 (215-255)||(18973353-18973393)
chr8 (215-255)||(25502741-25502781)
chr8 (215-255)||(26908468-26908508)
chr8 (102-188)||(17526607-17526694)
chr8 (102-160)||(16077829-16077887)
chr8 (128-182)||(44754261-44754315)
chr8 (102-182)||(16083513-16083594)
chr8 (102-182)||(16084920-16085001)
chr8 (102-182)||(16086327-16086408)
chr8 (102-182)||(16087734-16087815)
chr8 (102-194)||(37718157-37718250)
[»] scaffold0878 (1 HSPs)
scaffold0878 (47-194)||(4238-4388)
[»] scaffold0123 (1 HSPs)
scaffold0123 (60-241)||(8686-8871)
[»] scaffold0369 (1 HSPs)
scaffold0369 (47-194)||(7547-7697)
[»] scaffold0208 (1 HSPs)
scaffold0208 (45-193)||(1501-1652)
[»] scaffold0018 (1 HSPs)
scaffold0018 (47-194)||(194590-194740)
[»] scaffold1778 (1 HSPs)
scaffold1778 (44-182)||(968-1109)
[»] scaffold0264 (1 HSPs)
scaffold0264 (20-194)||(12994-13170)
[»] scaffold0179 (2 HSPs)
scaffold0179 (44-194)||(27485-27638)
scaffold0179 (58-188)||(24840-24973)
[»] scaffold0320 (1 HSPs)
scaffold0320 (29-193)||(12001-12167)
[»] chr1 (16 HSPs)
chr1 (45-183)||(12020225-12020366)
chr1 (17-194)||(18433154-18433331)
chr1 (45-193)||(24276819-24276970)
chr1 (45-193)||(24280932-24281083)
chr1 (19-188)||(19749484-19749654)
chr1 (19-188)||(19751710-19751880)
chr1 (44-194)||(20442498-20442652)
chr1 (44-194)||(20514359-20514513)
chr1 (100-171)||(15158088-15158159)
chr1 (100-171)||(15142662-15142733)
chr1 (45-162)||(36910496-36910612)
chr1 (33-151)||(20435263-20435384)
chr1 (102-191)||(20194899-20194990)
chr1 (212-255)||(546062-546105)
chr1 (212-255)||(555347-555390)
chr1 (212-255)||(19913737-19913780)
[»] scaffold0023 (2 HSPs)
scaffold0023 (42-194)||(149873-150030)
scaffold0023 (44-194)||(146668-146823)
[»] scaffold0139 (1 HSPs)
scaffold0139 (22-182)||(2901-3064)
[»] scaffold0045 (1 HSPs)
scaffold0045 (44-194)||(78669-78821)
[»] scaffold1555 (1 HSPs)
scaffold1555 (131-240)||(1413-1522)
[»] scaffold0167 (1 HSPs)
scaffold0167 (44-194)||(10442-10595)
[»] scaffold0074 (1 HSPs)
scaffold0074 (42-175)||(56479-56615)
[»] scaffold0001 (2 HSPs)
scaffold0001 (172-239)||(30250-30317)
scaffold0001 (172-239)||(35557-35624)
[»] scaffold0130 (2 HSPs)
scaffold0130 (100-182)||(14980-15062)
scaffold0130 (32-140)||(19021-19132)
[»] scaffold0071 (1 HSPs)
scaffold0071 (108-194)||(44367-44453)
[»] scaffold0202 (2 HSPs)
scaffold0202 (32-182)||(13858-14011)
scaffold0202 (32-182)||(10371-10524)
[»] scaffold1505 (1 HSPs)
scaffold1505 (42-182)||(421-564)
[»] scaffold0438 (1 HSPs)
scaffold0438 (102-194)||(3880-3973)
[»] scaffold0088 (1 HSPs)
scaffold0088 (191-240)||(36549-36598)
[»] scaffold0010 (1 HSPs)
scaffold0010 (215-255)||(245327-245367)
[»] scaffold0013 (1 HSPs)
scaffold0013 (112-175)||(147418-147481)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 10816067 - 10815832
Alignment:
Q  19 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaataccccta-ttgaaggctaagcaaccaaaaccca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||| || ||||||||| ||||||||    
T  10816067 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacc--tacttggagactaagcaactaaaaccca 10815970  T
Q  118 agcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatactgagaaaaccctaattctcttta 217  Q
    || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10815969 agtccatagaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatactgagaaaaccctaattctcttta 10815870  T
Q  218 ccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10815869 ccgtactttttcgacaagtacagttggcgccgtctgtg 10815832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 10813171 - 10812946
Alignment:
Q  19 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||| ||||| |||||||||    
T  10813171 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctattacttgaagactaagaaaccaaaac 10813072  T
Q  115 ccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatactgagaaaaccctaattctct 214  Q
    |||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10813071 ccaagcccatagaaggctataaataccgcccttgagaatactctcaggtatccaataatcaatctaaaaccctagtatactgagaaaaccctaattctct 10812972  T
Q  215 ttaccgtactttttcgacaagtacag 240  Q
    ||| ||||||||||||||||||||||    
T  10812971 ttatcgtactttttcgacaagtacag 10812946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 25 - 239
Target Start/End: Original strand, 38700143 - 38700360
Alignment:
Q  25 ccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagc 120  Q
    ||||||||||||||||||||  ||||||||| ||||||||| ||||  ||||||| ||||||||||||||    | || |||||||||||||||||||||    
T  38700143 ccatggcgccgcctcaataac-ctctagaatgttctagaaaccgcccttaaatacgtaaatacccctattacttggagactaagcaaccaaaacccaagc 38700241  T
Q  121 ccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatactgagaaaaccctaattctctttaccg 220  Q
    ||||   |||||||||||||||||||| ||||||||||||  |||| |||||||| ||||||||||||||||||  ||||||||||||||||||||||||    
T  38700242 ccataagaggctataaataccacccttaagaacactctcacctatcgaataatcagtctaaaaccctagtatacgaagaaaaccctaattctctttaccg 38700341  T
Q  221 tactttttcgacaagtaca 239  Q
    |||||||||| ||||||||    
T  38700342 tactttttcgtcaagtaca 38700360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 17593645 - 17593823
Alignment:
Q  19 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaac 114  Q
    |||||||||||||||||||||||||| |||  |||||||||||||||   ||||||||||||||||||||||||||    | || |||||||||| ||||    
T  17593645 cattacccatggcgccgcctcaataa-tctgaagaatcttctagaaactacctctaaatacataaatacccctattacttggagactaagcaaccgaaac 17593743  T
Q  115 ccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| |||||    
T  17593744 ccaagcccatagaaggctataaataccacccttgacaacactctcagatatccaataatcagtctaaaaccctaatatac 17593823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 17601653 - 17601831
Alignment:
Q  19 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaac 114  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||| |||| |||||||||||||||||||||||    | || |||||||||| ||||    
T  17601653 cattacccatggcgccgcctcaataa-tctgtagaatcttctagaaaccgcccctaaatacataaatacccctattacttggagactaagcaaccgaaac 17601751  T
Q  115 ccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    |||||| ||| ||||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||| |||||    
T  17601752 ccaagcacatagaaggctataaatactacccttgagaacactctcaaatatccaataatcagtctaaaaccctaatatac 17601831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 8368418 - 8368240
Alignment:
Q  19 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaac 114  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||| ||||  ||||||||||||||||||||||    | || ||||| |||| ||||    
T  8368418 cattacccatagcgccgcctcaataa-tctctagaatcttctagaaaccgcccttaaatacataaatacccctattacttggagactaagtaaccgaaac 8368320  T
Q  115 ccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    |||||||||| |||||||||||||||||||||||||||||||||||  ||||||||| ||| ||||||| |||| |||||    
T  8368319 ccaagcccatagaaggctataaataccacccttgagaacactctcaaatatccaatagtcagtctaaaatcctaatatac 8368240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 8854277 - 8854113
Alignment:
Q  20 attacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacc 115  Q
    ||||||||| || |||||| ||||| |||||||||||||||||||| |||| |||||||||||||||||| ||||    | || ||||||||||||||||    
T  8854277 attacccatagcaccgccttaataa-tctctagaatcttctagaaaccgcc-ctaaatacataaatacccatattacttggagactaagcaaccaaaacc 8854180  T
Q  116 caagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||    
T  8854179 caagcccatagaaggctataaataccacccttgagaacactctcaagtatccaatattcagtctaaa 8854113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 45 - 183
Target Start/End: Complemental strand, 94682 - 94541
Alignment:
Q  45 atctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaatac 140  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||    | || ||||||||||||||||||||||||| |||| ||||||||||    
T  94682 atctctagaatcttctagaaaccgcc-ctaaatacataaatacccctattacttggagactaagcaaccaaaacccaagcccatggaagactataaatac 94584  T
Q  141 cacccttgagaacactctcaggtatccaataatcaatctaaaa 183  Q
    || ||||||||||||||||| ||||| |||||||| |||||||    
T  94583 catccttgagaacactctcaagtatctaataatcagtctaaaa 94541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 42 - 194
Target Start/End: Original strand, 16091834 - 16091990
Alignment:
Q  42 taaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaa 137  Q
    ||||||||||||| |||||||||| |||| ||||||||||||||| |||||||    | |  |||||||||||| |||||||||||| ||||||||||||    
T  16091834 taaatctctagaaacttctagaaaccgcc-ctaaatacataaataaccctattacttggatactaagcaaccaagacccaagcccatagaaggctataaa 16091932  T
Q  138 taccacccttgagaacactctcaggtatccaataatcaatct-aaaaccctagtatac 194  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| |||||||||||||||    
T  16091933 taccacccttgagaacactctcaagtatctaataaccagtctaaaaaccctagtatac 16091990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 58 - 183
Target Start/End: Complemental strand, 103531 - 103403
Alignment:
Q  58 tctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaac 153  Q
    |||||||| |||| |||||||||||||||||||||||    | || ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  103531 tctagaaaccgcc-ctaaatacataaatacccctattacttggagactaagcaaccaaaacccaagcccatggaaggctataaataccatccttgagaac 103433  T
Q  154 actctcaggtatccaataatcaatctaaaa 183  Q
    ||||||| ||||| |||||||| |||||||    
T  103432 actctcaagtatctaataatcagtctaaaa 103403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 14789888 - 14789719
Alignment:
Q  19 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaataccccta----ttgaaggctaagcaaccaaaac 114  Q
    |||||||| |||||||| ||||| |||  |||||||||||||||||| ||||  ||||||| ||||||||||||    ||||| | ||||||||||||||    
T  14789888 cattacccgtggcgccgactcaacaaacatctagaatcttctagaaaccgcccttaaatacgtaaatacccctattacttgaaagttaagcaaccaaaac 14789789  T
Q  115 ccaagcccat-tgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaa 183  Q
    ||||||||||  ||||||||||||||||| | ||||||| |||||||  ||||||||||||| |||||||    
T  14789788 ccaagcccataagaaggctataaataccatcgttgagaagactctcatctatccaataatcagtctaaaa 14789719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 194
Target Start/End: Original strand, 16082658 - 16082814
Alignment:
Q  42 taaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaa 137  Q
    ||||||||||||| ||||||||||  ||| ||||||||||||||| |||||||    | |  |||||||||||| |||||||||||| ||||||||||||    
T  16082658 taaatctctagaaacttctagaaactgcc-ctaaatacataaataaccctattacttggaaactaagcaaccaagacccaagcccatagaaggctataaa 16082756  T
Q  138 taccacccttgagaacactctcaggtatccaataatcaatct-aaaaccctagtatac 194  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| |||||||||||||||    
T  16082757 taccacccttgagaacactctcaagtatctaataaccagtctaaaaaccctagtatac 16082814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 18556695 - 18556777
Alignment:
Q  100 ctaagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||    
T  18556695 ctaagcaaccaaaacccaagcccatagaaggctataaataccacccttgagaacactctcaagtatccaatattcagtctaaa 18556777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 15417785 - 15417871
Alignment:
Q  108 ccaaaacccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||| |||||    
T  15417785 ccaaaacccaagcccatagaaggttataaataccacccttgagaacactctcaagtatccaatagtcagtctaaaaccctaatatac 15417871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 93 - 182
Target Start/End: Complemental strand, 26900684 - 26900595
Alignment:
Q  93 ttgaaggctaagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    |||||| ||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||| ||| ||||||    
T  26900684 ttgaagactaagcaaccaaaactcaagcccatagaaagctataaataccacccttgagaacactctcaagtatccaatattcagtctaaa 26900595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 193
Target Start/End: Complemental strand, 14561214 - 14561063
Alignment:
Q  44 aatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaata 139  Q
    |||||||| ||||||||||||| ||||  ||||||| ||||||||||||||    | ||  ||||||||||||||||||| |||| ||||||||||||||    
T  14561214 aatctctaaaatcttctagaaaccgcca-taaatacgtaaatacccctattacttggagaataagcaaccaaaacccaagtccatagaaggctataaata 14561116  T
Q  140 ccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtata 193  Q
    ||||||| ||||||||||||| | ||| ||| |||| ||| |||||||||||||    
T  14561115 ccaccctcgagaacactctcaaggatcgaatgatcagtct-aaaccctagtata 14561063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 8857115 - 8856960
Alignment:
Q  20 attacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacc 115  Q
    ||||||||| || |||||| ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||    | || |||||||||||||||     
T  8857115 attacccatagcaccgccttaataa-tctctagaatcttctagaaaccgcc-ctaaatacataaatacccctattacttggagactaagcaaccaaaact 8857018  T
Q  116 caagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    ||||||          ||||||||||||||||||||||||||||| |||||||||| ||| ||||||    
T  8857017 caagcc---------atataaataccacccttgagaacactctcaagtatccaatattcagtctaaa 8856960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 45 - 193
Target Start/End: Complemental strand, 14566397 - 14566247
Alignment:
Q  45 atctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaatac 140  Q
    ||||||| ||||||||||||| ||||  ||||||| ||||||||||||||    | ||  |||| |||||||||||||| |||| |||||||||||||||    
T  14566397 atctctaaaatcttctagaaaccgcca-taaatacgtaaatacccctattacttggagaataagaaaccaaaacccaagtccatagaaggctataaatac 14566299  T
Q  141 cacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtata 193  Q
    |||||||||||||| ||||| | ||| ||| |||| ||| |||||||||||||    
T  14566298 cacccttgagaacaatctcaaggatcgaatgatcagtct-aaaccctagtata 14566247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 188
Target Start/End: Complemental strand, 19767811 - 19767668
Alignment:
Q  50 tagaatcttctagaaatcgcctctaaa-tacataaatacccctattg----aaggctaagcaaccaaaacccaagcccattgaaggctataaataccacc 144  Q
    |||||||||||||||| |||| | ||| ||||||||||||||||||     || |||||| |||  |||||||||||||| ||||||||||||||||| |    
T  19767811 tagaatcttctagaaaccgcccccaaagtacataaatacccctattacttaaacgctaagtaactgaaacccaagcccatagaaggctataaataccatc 19767712  T
Q  145 cttgagaacactctcaggtatccaataatcaatctaaaacccta 188  Q
    |||||||| ||||||   |||| |||||||| ||||||||||||    
T  19767711 cttgagaagactctcgattatcgaataatcagtctaaaacccta 19767668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 10776983 - 10776893
Alignment:
Q  72 ctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactct 158  Q
    |||||||||||||||||||||||    | |||||||||||||||  ||||||||||| ||||| |||||||||||||||||||||||||||    
T  10776983 ctaaatacataaatacccctattacttggaggctaagcaaccaaggcccaagcccatagaaggttataaataccacccttgagaacactct 10776893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 15926801 - 15926707
Alignment:
Q  102 aagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctca-ggtatccaataatcaatct-aaaaccctagtatac 194  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||| || ||||| || |||||||| ||| ||| |||||||||||||||    
T  15926801 aagcaaccaaaacccaagcccatagcaggctataaataccacccttgagagcattctcagggcatccaatattcagtctaaaaaccctagtatac 15926707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 26907281 - 26907216
Alignment:
Q  105 caaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaat 170  Q
    |||||||||||||||||||| ||| |||||||||||||| |||||||||||||||| |||||||||    
T  26907281 caaccaaaacccaagcccatagaaagctataaataccactcttgagaacactctcaagtatccaat 26907216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 2689171 - 2689211
Alignment:
Q  215 ttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  2689171 ttaccgtactttttctacaagtacagttggcgccgtctgtg 2689211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 19808353 - 19808310
Alignment:
Q  212 tctttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    ||||||||||||||||||  ||||||||||||||||||||||||    
T  19808353 tctttaccgtactttttctgcaagtacagttggcgccgtctgtg 19808310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 11137205 - 11137165
Alignment:
Q  215 ttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  11137205 ttaccgtactttttctgcaagtacagttggcgccgtctgtg 11137165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 20012451 - 20012408
Alignment:
Q  212 tctttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    ||||||||||||||||||  | ||||||||||||||||||||||    
T  20012451 tctttaccgtactttttctgccagtacagttggcgccgtctgtg 20012408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 33484828 - 33484785
Alignment:
Q  212 tctttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    |||||||| |||||||||  ||||||||||||||||||||||||    
T  33484828 tctttaccatactttttctgcaagtacagttggcgccgtctgtg 33484785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 3071575 - 3071798
Alignment:
Q  19 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaac 114  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||    | || |||||||||| ||||    
T  3071575 cattacccacggcgccgcctcaataa-tctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttggagactaagcaaccgaaac 3071673  T
Q  115 ccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatactgagaaaaccctaattctct 214  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  3071674 ccaagcccatagaaggctataaataccacccttgagaacactctcaggtatccaataatcagtctaaaaccctaatatactgagaaaaccctaattctct 3071773  T
Q  215 ttaccgtactttttcgacaagtaca 239  Q
    |||||||||||||||||||||||||    
T  3071774 ttaccgtactttttcgacaagtaca 3071798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 28 - 194
Target Start/End: Original strand, 4876760 - 4876928
Alignment:
Q  28 tggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagccca 123  Q
    ||||||||||| ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||    | || ||||||||||||||||||||| ||    
T  4876760 tggcgccgccttaataa-tctctagaatcttctagaaaccgcc-ctaaatacataaatacccctattacttggagactaagcaaccaaaacccaagctca 4876857  T
Q  124 ttgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||    
T  4876858 ttgaaggctataaataccacccttgagaacactctcaagtatctaataatcagtctaaaaccctagtatac 4876928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 23692699 - 23692877
Alignment:
Q  19 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaac 114  Q
    ||||||||||||||||||||||| || |||||||||||||||||||| |||| |||||||| |||| |||||||||    | || |||||||||| ||||    
T  23692699 cattacccatggcgccgcctcaacaa-tctctagaatcttctagaaaccgcccctaaatacctaaaaacccctattacttggagactaagcaaccgaaac 23692797  T
Q  115 ccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    |||||||||| |||||||||||||||||||||||||||||||||||  ||||||||| ||| ||||| |||||| |||||    
T  23692798 ccaagcccatagaaggctataaataccacccttgagaacactctcatttatccaatagtcagtctaataccctattatac 23692877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 23696486 - 23696664
Alignment:
Q  19 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaac 114  Q
    ||||||||||||||||||||||| || |||||||||||||||||||| |||| |||||||| |||| |||||||||    | || |||||||||| ||||    
T  23696486 cattacccatggcgccgcctcaacaa-tctctagaatcttctagaaaccgcccctaaatacctaaaaacccctattacttggagactaagcaaccgaaac 23696584  T
Q  115 ccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    |||||||||| |||||||||||||||||||||||||||||||||||  ||||||||| ||| ||||| |||||| |||||    
T  23696585 ccaagcccatagaaggctataaataccacccttgagaacactctcatttatccaatagtcagtctaagaccctaatatac 23696664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 32 - 188
Target Start/End: Complemental strand, 29603932 - 29603773
Alignment:
Q  32 gccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattga 127  Q
    ||||||| |||||| |||||||| |||||||||| |||| | |||||| ||||||||||||||    | || |||||||||||||||||| |||||| ||    
T  29603932 gccgccttaataaacctctagaaccttctagaaaccgcc-caaaatacctaaatacccctattacttggagactaagcaaccaaaacccatgcccataga 29603834  T
Q  128 aggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaacccta 188  Q
    |||||||||||||||||||||||||||||||||  |||||||| |||| || |||||||||    
T  29603833 aggctataaataccacccttgagaacactctcatctatccaattatcagtcaaaaacccta 29603773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 42 - 182
Target Start/End: Complemental strand, 7311026 - 7310883
Alignment:
Q  42 taaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaa 137  Q
    |||| |||||||| |||||||||| |||| | |||  | ||||||||||||||    | || ||||||||||||||||||||||||| ||||||||||||    
T  7311026 taaacctctagaaccttctagaaaccgcc-caaaaggcctaaatacccctattacttggagactaagcaaccaaaacccaagcccatagaaggctataaa 7310928  T
Q  138 taccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||    
T  7310927 taccacccttgagaacactctcaggtatccaatattcagtctaaa 7310883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 32 - 182
Target Start/End: Original strand, 45278920 - 45279073
Alignment:
Q  32 gccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattga 127  Q
    ||||||||  |||| |||||||| |||||||||| |||| | |||  | ||||||||||||||    | || ||||||||||||||||||||||||| ||    
T  45278920 gccgcctctctaaacctctagaaccttctagaaaccgcc-caaaaggcctaaatacccctattacttggagactaagcaaccaaaacccaagcccataga 45279018  T
Q  128 aggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    ||||||||||||||||||||||||||||||||||  ||| |||| ||| ||||||    
T  45279019 aggctataaataccacccttgagaacactctcagagatcgaatattcagtctaaa 45279073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 32 - 182
Target Start/End: Original strand, 45286219 - 45286372
Alignment:
Q  32 gccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattga 127  Q
    ||||||||  |||| |||||||| |||||||||| |||| | |||  | ||||||||||||||    | || ||||||||||||||||||||||||| ||    
T  45286219 gccgcctctctaaacctctagaaccttctagaaaccgcc-caaaaggcctaaatacccctattacttggagactaagcaaccaaaacccaagcccataga 45286317  T
Q  128 aggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    ||||||||||||||||||||||||||||||||||  ||| |||| ||| ||||||    
T  45286318 aggctataaataccacccttgagaacactctcagagatcgaatattcagtctaaa 45286372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 5771907 - 5771989
Alignment:
Q  100 ctaagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| ||| ||||||    
T  5771907 ctaagcaaccgaaacccaagcccatagaaggctataaataccacccttgagagcactctcaagtatccaatattcagtctaaa 5771989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 42 - 182
Target Start/End: Complemental strand, 26126225 - 26126082
Alignment:
Q  42 taaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaa 137  Q
    |||| ||||||||||||||||||| |||| | |||  | ||||||||||||||    | || |||||||||| |||| ||||||||| ||||||||||||    
T  26126225 taaacctctagaatcttctagaaaccgcc-caaaaggcctaaatacccctattacttggagactaagcaaccgaaactcaagcccatagaaggctataaa 26126127  T
Q  138 taccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    |||||||||||||| |||||||| | || ||||| ||| ||||||    
T  26126126 taccacccttgagagcactctcaagcattcaatattcagtctaaa 26126082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 2218636 - 2218576
Alignment:
Q  122 cattgaaggctataaataccacccttgagaacactctc-aggtatccaataatcaatctaa 181  Q
    ||||||||||||||||||| |||||||||| || |||| ||| ||||||||||||||||||    
T  2218636 cattgaaggctataaatacaacccttgagagcattctcaaggcatccaataatcaatctaa 2218576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 8998208 - 8998251
Alignment:
Q  212 tctttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    ||||||||||||||||||  ||||||||||||||||||||||||    
T  8998208 tctttaccgtactttttctgcaagtacagttggcgccgtctgtg 8998251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 8164820 - 8164860
Alignment:
Q  215 ttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  8164820 ttaccgtactttttctgcaagtacagttggcgccgtctgtg 8164860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 1041469 - 1041406
Alignment:
Q  126 gaaggctataaataccacccttgagaacactctcaggt-atccaataatcaatctaaaacccta 188  Q
    ||||||||||||||| |||||| |||  ||||||| |  |||||||||||||||||||||||||    
T  1041469 gaaggctataaatacaacccttaagagaactctcaagacatccaataatcaatctaaaacccta 1041406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 20707 - 20473
Alignment:
Q  17 cacattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaa 112  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||||| |||||    | || |||||||||| ||    
T  20707 cacattatccatggcgccgcctcaataa-tctctagaatcttctagagaccgcccctaaatacataaataccgctattacttggagactaagcaaccgaa 20609  T
Q  113 acccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatactgagaaaaccctaattct 212  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||| ||||||||||||||||||||| ||||    
T  20608 acccaagcccatagaaggctataaataccacccttgagaacaccctcaggtatctaataatcagtctaaaaccttagtatactgagaaaaccctagttct 20509  T
Q  213 ctttaccgtactttttcgacaagtacagttggcgcc 248  Q
    ||||||||||||||||||||||||||||||||||||    
T  20508 ctttaccgtactttttcgacaagtacagttggcgcc 20473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 11100113 - 11100336
Alignment:
Q  19 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaac 114  Q
    ||||||||  |||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||    |  ||||||| |||  ||||    
T  11100113 cattacccccggcgccgcctcaataa-tctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaactgaaac 11100211  T
Q  115 ccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatactgagaaaaccctaattctct 214  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  11100212 ccaagcccatagaaggctataaataccacccttgggaacactctcaggtatccaataatcagtctgaaaccctagtatactgagaaaaccctaattctct 11100311  T
Q  215 ttaccgtactttttcgacaagtaca 239  Q
    |||||||||||||||||||||||||    
T  11100312 ttaccgtactttttcgacaagtaca 11100336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 15932425 - 15932272
Alignment:
Q  44 aatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaata 139  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||    | || |||||||||||| ||||||||||||  |||||||||||||    
T  15932425 aatctctagaatcttctagaaaccgcc-ctaaatacataaatacccctattacttggagactaagcaaccaagacccaagcccataaaaggctataaata 15932327  T
Q  140 ccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||| |||||    
T  15932326 ccacccttgagaacactctcaagtatccaataatcagtctaaaaccctaatatac 15932272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 23532676 - 23532504
Alignment:
Q  19 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaac 114  Q
    |||||||||| ||||||||| ||||| |||||||||||||||||||| |||| ||||||||||||||||| |||||    | || |||||||||| ||||    
T  23532676 cattacccatagcgccgccttaataa-tctctagaatcttctagaaaccgcc-ctaaatacataaataccactattacttggagactaagcaaccgaaac 23532579  T
Q  115 ccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatcta-aaacccta 188  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| ||| |||| ||||||||    
T  23532578 ccaagcccatagaaggctataaataccacccttgagaacactctcaagcatccaatagtcagtctataaacccta 23532504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 45 - 194
Target Start/End: Original strand, 11527318 - 11527470
Alignment:
Q  45 atctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaatac 140  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||    | || |||||||||| |||||||||||||| |||||||||||||||    
T  11527318 atctctagaatcttctagaaaccgcc-ctaaatacataaatacccctattacttggagactaagcaaccgaaacccaagcccatagaaggctataaatac 11527416  T
Q  141 cacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    |||||||| ||||||||||| | |||  ||||||| ||||||||||||||||||    
T  11527417 cacccttgggaacactctcaaggatctgataatcagtctaaaaccctagtatac 11527470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 45 - 194
Target Start/End: Original strand, 11544723 - 11544875
Alignment:
Q  45 atctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaatac 140  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||    | || |||||||||| |||||||||||||| |||||||||||||||    
T  11544723 atctctagaatcttctagaaaccgcc-ctaaatacataaatacccctattacttggagactaagcaaccgaaacccaagcccatagaaggctataaatac 11544821  T
Q  141 cacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    |||||||| ||||||||||| | |||  ||||||| ||||||| ||||||||||    
T  11544822 cacccttgggaacactctcaaggatctgataatcagtctaaaatcctagtatac 11544875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 194
Target Start/End: Original strand, 44356992 - 44357147
Alignment:
Q  42 taaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaa 137  Q
    |||||||||||||  ||||| ||| |||| |||||||||||||||||||||||    | || |||||||||||| |||||||||||| ||||||||||||    
T  44356992 taaatctctagaaatttctataaaccgcc-ctaaatacataaatacccctattatttggagactaagcaaccaagacccaagcccatagaaggctataaa 44357090  T
Q  138 taccacccttgagaacactctcaggtatccaataatcaatct-aaaaccctagtatac 194  Q
    ||||||||||||||||| ||||| ||||| |||||||| ||| |||||||||||||||    
T  44357091 taccacccttgagaaca-tctcaagtatctaataatcagtctaaaaaccctagtatac 44357147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 58 - 194
Target Start/End: Original strand, 44360128 - 44360269
Alignment:
Q  58 tctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaac 153  Q
    |||||||| |||| |||||||||||||||||||||||    | || |||||||||||| |||||||||||| |||| |||||||||||||||||||||||    
T  44360128 tctagaaaccgcc-ctaaatacataaatacccctattatttggagactaagcaaccaagacccaagcccatagaagactataaataccacccttgagaac 44360226  T
Q  154 actctcaggtatccaataatcaatctaaaa--ccctagtatac 194  Q
    ||||||| ||||| |||||||| |||||||  |||||||||||    
T  44360227 actctcaagtatctaataatcagtctaaaaacccctagtatac 44360269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 550684 - 550604
Alignment:
Q  172 atcaatctaaaaccctagtatactgagaaaaccctaattctctttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    ||||||||||| |||||  |||| |||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||    
T  550684 atcaatctaaa-ccctaaaatacagagaaaaccctaattctctttaccgtactttttcaacaagtaca--tggcgccgtctgtg 550604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 23522445 - 23522322
Alignment:
Q  19 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaac 114  Q
    ||||||||||  || ||||| ||||| |||||||||||||||||||| | || |||||||||||||||||||||||    | || |||||||||| ||||    
T  23522445 cattacccataacgtcgccttaataa-tctctagaatcttctagaaacctcc-ctaaatacataaatacccctattacttggagactaagcaaccgaaac 23522348  T
Q  115 ccaagcccattgaaggctataaatac 140  Q
    |||| ||||| |||||||||||||||    
T  23522347 ccaaacccatagaaggctataaatac 23522322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 43173592 - 43173424
Alignment:
Q  17 cacattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctattg---aagg-ctaagcaaccaaa 112  Q
    ||||||| ||||||||||||||| |||| ||||||||||||| |||||  |||||  ||||||| |||||| |||||||   |||| | |||||||| ||    
T  43173592 cacattatccatggcgccgcctcgataa-tctctagaatcttatagaatccgccta-aaatacacaaatactcctattgcttaaggaccaagcaaccgaa 43173495  T
Q  113 acccaagcccattgaaggctataaataccacccttgagaacactctc-aggtatccaataatcaatctaaa 182  Q
    |||||||| |||   |||||||||||||||||||||||| ||  ||| ||| |||||||||||| ||||||    
T  43173494 acccaagctcataacaggctataaataccacccttgagagcatcctcaaggcatccaataatcagtctaaa 43173424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 9066411 - 9066492
Alignment:
Q  102 aagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctc-aggtatccaataatcaatctaaa 182  Q
    |||||||| |||||||||||||| | ||||||||||||| || ||||||| || |||| ||| |||||||||||||||||||    
T  9066411 aagcaaccgaaacccaagcccatagcaggctataaatactactcttgagatcattctcaaggcatccaataatcaatctaaa 9066492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 6201988 - 6202071
Alignment:
Q  112 aacccaagcccattgaaggctataaataccacccttgagaacactctca-ggtatccaataatcaatctaaaaccctagtatac 194  Q
    ||||||||||||| | ||||||||||||| || || |||| || ||||| ||||||||||||||| |||||||||||| |||||    
T  6201988 aacccaagcccatagcaggctataaatactactctggagatcattctcaaggtatccaataatcagtctaaaaccctaatatac 6202071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 18016904 - 18016997
Alignment:
Q  102 aagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctc-aggtatccaataatcaatctaaaaccctagtatac 194  Q
    ||||||||||||||||||||||| | |||||||| |||| |  ||||||| || |||| ||| |||||||||||| |||||||| || ||||||    
T  18016904 aagcaaccaaaacccaagcccatagcaggctatatatactaatcttgagatcattctcaaggcatccaataatcagtctaaaactctggtatac 18016997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 6198714 - 6198797
Alignment:
Q  112 aacccaagcccattgaaggctataaataccacccttgagaacactctca-ggtatccaataatcaatctaaaaccctagtatac 194  Q
    ||||||||||||  | ||||||||||||| || ||||||| || ||||| ||||| ||||||||| |||||||||||| |||||    
T  6198714 aacccaagcccacagcaggctataaatactactcttgagatcattctcaaggtattcaataatcactctaaaaccctaatatac 6198797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 15834960 - 15834917
Alignment:
Q  212 tctttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    ||||||||||||||||||  ||||||||||||||||||||||||    
T  15834960 tctttaccgtactttttctgcaagtacagttggcgccgtctgtg 15834917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 362114 - 362074
Alignment:
Q  215 ttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  362114 ttaccgtactttttctgcaagtacagttggcgccgtctgtg 362074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 12538445 - 12538405
Alignment:
Q  215 ttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  12538445 ttaccgtactttttctgcaagtacagttggcgccgtctgtg 12538405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 5332524 - 5332481
Alignment:
Q  212 tctttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    ||||||||||||||||||| | |||||||||| |||||||||||    
T  5332524 tctttaccgtactttttcggctagtacagttgacgccgtctgtg 5332481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 23517934 - 23517886
Alignment:
Q  135 aaataccacccttgagaacactctcaggtatccaataatcaatctaaaa 183  Q
    |||||| ||||||||||||||||||| | |||||||| ||| |||||||    
T  23517934 aaatacgacccttgagaacactctcaagcatccaatagtcagtctaaaa 23517886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 30218105 - 30218049
Alignment:
Q  102 aagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactct 158  Q
    |||||||| |||||||||| ||| | || |||||||||||||||||| || ||||||    
T  30218105 aagcaaccgaaacccaagctcatagcagactataaataccacccttgggagcactct 30218049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 4e-78; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 17997012 - 17996789
Alignment:
Q  19 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaac 114  Q
    ||||||||  |||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||    |  ||||||| |||  ||||    
T  17997012 cattacccccggcgccgcctcaataa-tctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttgggggctaagtaactgaaac 17996914  T
Q  115 ccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatactgagaaaaccctaattctct 214  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  17996913 ccaagcccatagaaggctataaataccacccttgggaacactctcaggtatccaataatcagtctgaaaccctagtatactgagaaaaccctaattctct 17996814  T
Q  215 ttaccgtactttttcgacaagtaca 239  Q
    |||||||||||||||||||||||||    
T  17996813 ttaccgtactttttcgacaagtaca 17996789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 30 - 239
Target Start/End: Original strand, 25970103 - 25970316
Alignment:
Q  30 gcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccatt 125  Q
    ||||| |||||||||| ||||||||||||||||||| |||| ||||||||||||| |||||||||    | ||  ||||||||| ||||||||||||||     
T  25970103 gcgccacctcaataaa-ctctagaatcttctagaaaccgcccctaaatacataaacacccctattacttggagattaagcaaccgaaacccaagcccata 25970201  T
Q  126 gaaggctataaataccacccttgagaacactctca-ggtatccaataatcaatctaaaaccctagtatactgagaaaaccctaattctctttaccgtact 224  Q
    ||||||||||||||| || ||||||| || ||||| || |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  25970202 gaaggctataaatactactcttgagatcattctcaaggcatccaataatcagtctaaaaccctagtatactgagaaaaccctaattttctttaccgtact 25970301  T
Q  225 ttttcgacaagtaca 239  Q
    |||||||||||||||    
T  25970302 ttttcgacaagtaca 25970316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 30 - 239
Target Start/End: Original strand, 25974543 - 25974756
Alignment:
Q  30 gcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccatt 125  Q
    ||||| |||||||||| ||||||||||||||||||| |||| ||||||||||||| |||||||||    | ||  ||||||||| ||||||||||||||     
T  25974543 gcgccacctcaataaa-ctctagaatcttctagaaaccgcccctaaatacataaacacccctattacttggagattaagcaaccgaaacccaagcccata 25974641  T
Q  126 gaaggctataaataccacccttgagaacactctca-ggtatccaataatcaatctaaaaccctagtatactgagaaaaccctaattctctttaccgtact 224  Q
    ||||||||||||||| || ||||||| || ||||| || |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  25974642 gaaggctataaatactactcttgagatcattctcaaggcatccaataatcagtctaaaaccctagtatactgagaaaaccctaattttctttaccgtact 25974741  T
Q  225 ttttcgacaagtaca 239  Q
    |||||||||||||||    
T  25974742 ttttcgacaagtaca 25974756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 47 - 240
Target Start/End: Complemental strand, 18929549 - 18929353
Alignment:
Q  47 ctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaatacca 142  Q
    |||||||| |||||||||| | || | |||||| ||||||||||||||    | ||||||||||||||| |||||||||||| |||||||||||||||||    
T  18929549 ctctagaaccttctagaaaccacc-cgaaatacgtaaatacccctattatttggaggctaagcaaccaagacccaagcccatagaaggctataaatacca 18929451  T
Q  143 cccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatactgagaaaaccctaattctctttaccgtactttttcgacaagtacag 240  Q
    || ||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  18929450 cctttgagaacactctcaagcatctaataatcaatctaaaaccctagtatactgagaaaattctaattctctttaccgtactttttcgacaagtacag 18929353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 47 - 248
Target Start/End: Complemental strand, 19008649 - 19008445
Alignment:
Q  47 ctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaatacca 142  Q
    |||||||| |||||||||| | || | |||||| ||||||||||||||    | ||||||||||||||| |||||||||||| |||||||||||||||||    
T  19008649 ctctagaaccttctagaaacctcc-cgaaatacgtaaatacccctattacttggaggctaagcaaccaagacccaagcccatagaaggctataaatacca 19008551  T
Q  143 cccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatactgagaaaaccctaattctctttaccgtactttttcgacaagtacagtt 242  Q
    || ||||||||||||||| | ||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||| |||||||||||||    
T  19008550 cctttgagaacactctcaagcatctaataatcaatctaaaaccccagtatactgagaaaatcctaattctctttaccatacttttttgacaagtacagtt 19008451  T
Q  243 ggcgcc 248  Q
    ||||||    
T  19008450 ggcgcc 19008445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 13727317 - 13727207
Alignment:
Q  129 ggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatactgagaaaaccctaattctctttaccgtacttttt 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||  ||||||||||||||||||||||||||||||||    
T  13727317 ggctataaataccacccttgagaacactctcaggtatccaataatcagtctaaaaccctaatatacaaagaaaaccctaattctctttaccgtacttttt 13727218  T
Q  229 cgacaagtaca 239  Q
    |||||||||||    
T  13727217 cgacaagtaca 13727207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 20090637 - 20090467
Alignment:
Q  19 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaac 114  Q
    ||||| |||||||||||||||| ||| |||||||||||||||||||| |||| |||||||||||||||||||||||    | || |||||||||| ||||    
T  20090637 cattatccatggcgccgcctcactaa-tctctagaatcttctagaaaccgcc-ctaaatacataaatacccctattacttggagactaagcaaccgaaac 20090540  T
Q  115 ccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccct 187  Q
    |||||||||| | |||||||||||||||||||||||||||||||||  ||||||| ||||| |||||||||||    
T  20090539 ccaagcccataggaggctataaataccacccttgagaacactctcatctatccaagaatcagtctaaaaccct 20090467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 42 - 194
Target Start/End: Complemental strand, 19573805 - 19573649
Alignment:
Q  42 taaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaa 137  Q
    ||||||||||||| |||||| ||| |||| |||||||||||||||||||||||    | || |||||||||||| |||||||||||| ||||||||||||    
T  19573805 taaatctctagaaacttctataaaccgcc-ctaaatacataaatacccctattacttggagactaagcaaccaagacccaagcccatagaaggctataaa 19573707  T
Q  138 taccacccttgagaacactctcaggtatccaataatcaatct-aaaaccctagtatac 194  Q
    ||||||||||||||||||||||| ||||| |||||||| ||| |||||||||||||||    
T  19573706 taccacccttgagaacactctcaagtatctaataatcagtctaaaaaccctagtatac 19573649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 137 - 239
Target Start/End: Complemental strand, 13728663 - 13728561
Alignment:
Q  137 ataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatactgagaaaaccctaattctctttaccgtactttttcgacaagt 236  Q
    |||||| ||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  13728663 ataccatccttgagaacactctcaggaatccaataatcagtctaaaaccctaatatactgagaaaaccctaattctctttaccgtactttttcgccaagt 13728564  T
Q  237 aca 239  Q
    |||    
T  13728563 aca 13728561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 47 - 194
Target Start/End: Complemental strand, 23607154 - 23607004
Alignment:
Q  47 ctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaatacca 142  Q
    ||||||||  ||||||||| |||| | ||||||| |||||||||||||    | || ||||||||||||||||||||||||| ||||||||||||||||     
T  23607154 ctctagaactttctagaaaccgcc-caaaatacacaaatacccctattacttggagactaagcaaccaaaacccaagcccatagaaggctataaatacct 23607056  T
Q  143 cccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    |||||||||||||||||||||||| |||||||| |  |||||||||| ||||    
T  23607055 cccttgagaacactctcaggtatctaataatcagtaaaaaaccctagcatac 23607004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 194
Target Start/End: Original strand, 11231297 - 11231451
Alignment:
Q  42 taaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaa 137  Q
    ||||||||||||| |||||||||  |||| ||||||||||||||||| |||||    | || |||||||||||| |||||||||||| |||| |||||||    
T  11231297 taaatctctagaaacttctagaagccgcc-ctaaatacataaataccgctattacttggagactaagcaaccaagacccaagcccatagaagactataaa 11231395  T
Q  138 taccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    ||||||||||||||| ||||||||  ||| |||| |||||| |||||||||||||||    
T  11231396 taccacccttgagaagactctcagtaatctaatattcaatc-aaaaccctagtatac 11231451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 47 - 182
Target Start/End: Original strand, 16688550 - 16688688
Alignment:
Q  47 ctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaatacca 142  Q
    ||||| || |||||||||| |||| |||||||| ||||||||||||||    | ||  ||||||||||||| |||||||||| |||||||||||||||||    
T  16688550 ctctaaaaccttctagaaaccgcc-ctaaatacctaaatacccctattacttggagattaagcaaccaaaatccaagcccatagaaggctataaatacca 16688648  T
Q  143 cccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    |||||||||||||||||||| |||||||| ||| ||||||    
T  16688649 cccttgagaacactctcaggcatccaatattcagtctaaa 16688688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 100 - 183
Target Start/End: Complemental strand, 19011742 - 19011659
Alignment:
Q  100 ctaagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaa 183  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||    
T  19011742 ctaagaaaccaaaacccaagcccatagaaggctataaataccacccttgagaacactctcaagtatctaataatcagtctaaaa 19011659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 13727837 - 13727716
Alignment:
Q  19 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaataccccta----ttgaaggctaagcaaccaaaac 114  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||    ||  || |||||||||| ||||    
T  13727837 cattacccacggcgccgcctcaataa-tctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttagagactaagcaaccgaaac 13727739  T
Q  115 ccaagcccattgaaggctataaa 137  Q
    ||||| |||| ||||||||||||    
T  13727738 ccaagtccatagaaggctataaa 13727716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 182
Target Start/End: Original strand, 8650038 - 8650181
Alignment:
Q  42 taaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaa 137  Q
    |||| |||||||| |||||||||| |||| | |||  | ||||||||||||||    | || ||||||||||||||| ||||| ||| ||||||||||||    
T  8650038 taaacctctagaaccttctagaaaccgcc-caaaaggcctaaatacccctattatttggagactaagcaaccaaaactcaagctcatagaaggctataaa 8650136  T
Q  138 taccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    ||||||||||||||||||||||| |||||||||| ||| ||||||    
T  8650137 taccacccttgagaacactctcacgtatccaatattcagtctaaa 8650181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 8668129 - 8668211
Alignment:
Q  100 ctaagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||| ||| ||||||    
T  8668129 ctaagcaaccaaaacccaagcccatagaagactataaataccacccttgagaacattctcaagtatccaatattcagtctaaa 8668211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 42 - 158
Target Start/End: Complemental strand, 19019434 - 19019315
Alignment:
Q  42 taaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaa 137  Q
    |||| |||||||| |||||||||| |||| | |||  | ||||||||||||||    | || ||||||||||||||||||||||||| ||||||||||||    
T  19019434 taaacctctagaaccttctagaaaccgcc-caaaaggcctaaatacccctattacttggagactaagcaaccaaaacccaagcccatagaaggctataaa 19019336  T
Q  138 taccacccttgagaacactct 158  Q
    |||||||||||||||||||||    
T  19019335 taccacccttgagaacactct 19019315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 42 - 194
Target Start/End: Complemental strand, 19577423 - 19577269
Alignment:
Q  42 taaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaa 137  Q
    ||||||||||||| |||||||||| ||||      || |||||||||||||||    | || |||||||||||| ||||||| |||| ||||||||||||    
T  19577423 taaatctctagaaacttctagaaaccgccc-----tatataaatacccctattacttggagactaagcaaccaagacccaagtccatagaaggctataaa 19577329  T
Q  138 taccacccttgagaacactctcagg--tatccaataatcaatct-aaaaccctagtatac 194  Q
    ||||||||||||||||||||||| |  ||| ||||||||| ||| |||||||||||||||    
T  19577328 taccacccttgagaacactctcaagtatatacaataatcagtctaaaaaccctagtatac 19577269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 22467586 - 22467668
Alignment:
Q  100 ctaagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| | ||| |||| ||| ||||||    
T  22467586 ctaagcaaccgaaacccaagcccatagaaggctataaataccacccttgagaacactctcaaggatcgaatattcagtctaaa 22467668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 151
Target Start/End: Original strand, 16666272 - 16666379
Alignment:
Q  47 ctctagaatcttctagaaatcgcctctaaatacataaataccccta----ttgaaggctaagcaaccaaaacccaagcccattgaaggctataaatacca 142  Q
    |||||||| |||||||||| |||| ||| |||| ||||||||||||    ||| ||  |||||||||||||||||||||||| |||||||||||||||||    
T  16666272 ctctagaaccttctagaaaccgcc-ctatatacctaaatacccctactacttggagattaagcaaccaaaacccaagcccatagaaggctataaatacca 16666370  T
Q  143 cccttgaga 151  Q
    ||| |||||    
T  16666371 cccatgaga 16666379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 22622566 - 22622523
Alignment:
Q  212 tctttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    ||||||||||||||||||  ||||||||||||||||||||||||    
T  22622566 tctttaccgtactttttctgcaagtacagttggcgccgtctgtg 22622523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 4282758 - 4282718
Alignment:
Q  215 ttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  4282758 ttaccgtactttttctgcaagtacagttggcgccgtctgtg 4282718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 11694902 - 11694942
Alignment:
Q  215 ttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  11694902 ttaccgtactttttctgcaagtacagttggcgccgtctgtg 11694942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 34336098 - 34336058
Alignment:
Q  215 ttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  34336098 ttaccgtactttttctgcaagtacagttggcgccgtctgtg 34336058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 24069197 - 24069261
Alignment:
Q  131 ctataaataccacccttgagaacactctca-ggtatccaataatcaatctaaaaccctagtatac 194  Q
    ||||||||| || |||||||| || ||||| || |||||||||||| ||||||||||||| ||||    
T  24069197 ctataaatagcaaccttgagagcattctcaaggcatccaataatcagtctaaaaccctagaatac 24069261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 29 - 195
Target Start/End: Original strand, 40936575 - 40936745
Alignment:
Q  29 ggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccat 124  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    | |||||||||||| |||||||||||||||    
T  40936575 ggcgccgcctcaataaatctctagaatcttctagaaatcgcctataaatacataaatacccctattacttggaggctaagcaacaaaaacccaagcccat 40936674  T
Q  125 tgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatact 195  Q
     ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| ||||||    
T  40936675 agaaggctataaataccacccttgagaacagtctcaagtatccaataatcagtctaaaaccctaatatact 40936745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 29 - 188
Target Start/End: Original strand, 40933180 - 40933343
Alignment:
Q  29 ggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccat 124  Q
    |||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||    | ||||||||||||||||||||||||||||    
T  40933180 ggcgccgcctcaataaatctctagaaacttctaaaaatcgcctataaatacataaatacccctattacttggaggctaagcaaccaaaacccaagcccat 40933279  T
Q  125 tgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaacccta 188  Q
     ||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||    
T  40933280 agaaggctataaataccacccttgagaacactcttaagtatccaataatcagtctaaaacccta 40933343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 45 - 194
Target Start/End: Original strand, 8460158 - 8460310
Alignment:
Q  45 atctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaatac 140  Q
    |||| |||||||||||||||| | || |||||||||||||||||||||||    | || ||||| ||||||||||||||||||| |||||||||||||||    
T  8460158 atctttagaatcttctagaaaccacc-ctaaatacataaatacccctattacttggagactaagaaaccaaaacccaagcccatagaaggctataaatac 8460256  T
Q  141 cacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    ||||||||||||||||||||| ||||||||||| | |||||||||||| |||||    
T  8460257 cacccttgagaacactctcagatatccaataatgagtctaaaaccctaatatac 8460310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 26857603 - 26857438
Alignment:
Q  19 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaac 114  Q
    |||||||||| || |||||| ||||| |||||||||||||||||||| |||| |||||||| ||||| ||||||||    | ||  ||||||||||||||    
T  26857603 cattacccatagcaccgccttaataa-tctctagaatcttctagaaaccgcc-ctaaatacctaaatccccctattacttggagattaagcaaccaaaac 26857506  T
Q  115 ccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||| ||| ||||||    
T  26857505 ccaagcccatagaaggctataaataccacccttgaggacactctcaagtatccaatattcagtctaaa 26857438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 50 - 160
Target Start/End: Complemental strand, 26863816 - 26863703
Alignment:
Q  50 tagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaataccaccc 145  Q
    |||||||||||||||| |||| |||||||| ||||||||||||||    | ||  |||||||||||||||||||||||| ||||||||||||||||||||    
T  26863816 tagaatcttctagaaaccgcc-ctaaatacctaaatacccctattacttggagattaagcaaccaaaacccaagcccatagaaggctataaataccaccc 26863718  T
Q  146 ttgagaacactctca 160  Q
    ||||| |||||||||    
T  26863717 ttgaggacactctca 26863703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 20680242 - 20680149
Alignment:
Q  102 aagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctc-aggtatccaataatcaatctaaaaccctagtatac 194  Q
    |||||||| |||||||||||||| | ||||||||||||| || ||||||| || |||| ||| |||||||||||| ||||||||||||||||||    
T  20680242 aagcaaccgaaacccaagcccatagcaggctataaatactactcttgagatcattctcaaggcatccaataatcagtctaaaaccctagtatac 20680149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 38836734 - 38836867
Alignment:
Q  32 gccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattga 127  Q
    ||||||| | |||| |||||||| |||||||| |||||| | |||||| ||||||||||||||    | || ||||||||  ||||||||||||||| ||    
T  38836734 gccgccttactaaaactctagaaccttctagagatcgcc-caaaatacctaaatacccctattacttggagactaagcaataaaaacccaagcccataga 38836832  T
Q  128 aggctataaataccacccttgagaacactctcagg 162  Q
     ||||||||||| ||||||||||| ||||||||||    
T  38836833 gggctataaatatcacccttgagagcactctcagg 38836867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 38840653 - 38840786
Alignment:
Q  32 gccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattga 127  Q
    ||||||| | |||| |||||||| |||||||| |||||| | |||||| |||||| || ||||    | || |||||||| ||||||||||| |||| ||    
T  38840653 gccgccttactaaaactctagaaccttctagagatcgcc-caaaatacctaaatatccttattacttggagactaagcaatcaaaacccaagtccataga 38840751  T
Q  128 aggctataaataccacccttgagaacactctcagg 162  Q
     ||||||||||| ||||||||||||||||||||||    
T  38840752 gggctataaatatcacccttgagaacactctcagg 38840786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 32965740 - 32965813
Alignment:
Q  19 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt 94  Q
    ||||| || ||||||||||| ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||    
T  32965740 cattatccgtggcgccgccttaataa-tctctagaatcttctagaaaccgcc-ctaaatacataaatacccctatt 32965813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 27073738 - 27073831
Alignment:
Q  102 aagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctc-aggtatccaataatcaatctaaaaccctagtatac 194  Q
    |||||||| ||||| ||| |||| | || ||||||||||||||||||||| || |||| ||| ||| |||||||| ||||||| ||||||||||    
T  27073738 aagcaaccgaaacctaagtccatagcagactataaataccacccttgagagcattctcaaggcatctaataatcagtctaaaaacctagtatac 27073831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 40572274 - 40572231
Alignment:
Q  212 tctttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    ||||||||||||||||||  ||||||||||||||||||||||||    
T  40572274 tctttaccgtactttttctgcaagtacagttggcgccgtctgtg 40572231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 19049776 - 19049695
Alignment:
Q  102 aagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctc-aggtatccaataatcaatctaaa 182  Q
    |||||||| ||||||||||||||   | |||||||||||||| ||||||| || |||| ||||||| ||||| |||||||||    
T  19049776 aagcaaccgaaacccaagcccataacatgctataaataccactcttgagagcattctcaaggtatcaaataaccaatctaaa 19049695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 20675494 - 20675401
Alignment:
Q  102 aagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctca-ggtatccaataatcaatctaaaaccctagtatac 194  Q
    |||||||| |||||||||||||    ||||||||||||| || ||||||| || ||||| || |||||||||| |  |||||||||||||||||    
T  20675494 aagcaaccgaaacccaagcccagaacaggctataaatactactcttgagatcattctcaaggcatccaataataagactaaaaccctagtatac 20675401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 37257080 - 37256998
Alignment:
Q  112 aacccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    ||||||||||||  | || ||||||||||||| || |||| || |||||| ||||||||||||| ||  |||||||| |||||    
T  37257080 aacccaagcccaaagcagactataaataccactctagagatcattctcagatatccaataatcagtcataaaccctaatatac 37256998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 23882324 - 23882502
Alignment:
Q  19 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaac 114  Q
    ||||| |||||||||||||||||||| ||| |||||||||||||||| |||| |||||||||||||||||||||||    | || |||||||||| ||||    
T  23882324 cattatccatggcgccgcctcaataa-tctttagaatcttctagaaaccgcccctaaatacataaatacccctattacttggagtctaagcaaccgaaac 23882422  T
Q  115 ccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||    
T  23882423 ccaagcccatagaaggctataaataccacccttgacaacactctcaggtatccaatagtcaatctaaaaccctaatatac 23882502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 27789015 - 27789194
Alignment:
Q  19 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaac 114  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| || ||||    | || |||||||||| ||||    
T  27789015 cattacccatggcgccgcctcaataa-tctctagaatcttctagaaaccgcccctaaatacataaatagccttattacttggagactaagcaaccgaaac 27789113  T
Q  115 ccaagcccattgaa-ggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    ||||||| |   || |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  27789114 ccaagcctaaaaaaaggctataaataccacccttgagaacactctcaagtatccaataatcagtctaaaaccctagtatac 27789194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 23878676 - 23878853
Alignment:
Q  19 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaac 114  Q
    ||||| ||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||    | || |||||||||| ||||    
T  23878676 cattatccatggcaccgcctcaataa-tctctagaatcttctagaaaccgcctctaaatacataaatacccttattacttggagactaagcaaccgaaac 23878774  T
Q  115 ccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    |||||| ||| |||| |||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||| |||||    
T  23878775 ccaagctcatagaag-ctataaataccacccttgagaacagtctcaggtatccaatagtcagtctaaaaccctaatatac 23878853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 182
Target Start/End: Original strand, 10968702 - 10968866
Alignment:
Q  20 attacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacc 115  Q
    ||||||||| ||||||||| ||||  |||||||||||||||||||| |||| |||||||||||||||||||||||    | || ||||||||||||||||    
T  10968702 attacccatagcgccgccttaatag-tctctagaatcttctagaaaccgcc-ctaaatacataaatacccctattacttggagactaagcaaccaaaacc 10968799  T
Q  116 caagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| ||| ||||||    
T  10968800 caagcccatagaaggctataaataccacccttgagaacactctcaaggatccaatattcagtctaaa 10968866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 20 - 182
Target Start/End: Original strand, 10754933 - 10755097
Alignment:
Q  20 attacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacc 115  Q
    ||||||||| ||||||||| ||||  |||||| ||||||||||||| |||| |||||||||||||||||||||||    | || ||||||||||||||||    
T  10754933 attacccatagcgccgccttaatag-tctctaaaatcttctagaaaccgcc-ctaaatacataaatacccctattacttggagactaagcaaccaaaacc 10755030  T
Q  116 caagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| ||| ||||||    
T  10755031 caagcccatagaaggctataaataccacccttgagaacactctcaaggatccaatattcagtctaaa 10755097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 182
Target Start/End: Original strand, 10757210 - 10757374
Alignment:
Q  20 attacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacc 115  Q
    ||||||||| ||||||||| ||||  |||||||||||||||||||| |||| |||||||||||||||||| ||||    | || ||||||||||||||||    
T  10757210 attacccatagcgccgccttaatag-tctctagaatcttctagaaaccgcc-ctaaatacataaatacccatattacttggagactaagcaaccaaaacc 10757307  T
Q  116 caagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    ||||||||| |||||||| ||||||||||||||||||||| |||| | |||||||| ||| ||||||    
T  10757308 caagcccatagaaggctacaaataccacccttgagaacacactcaaggatccaatattcagtctaaa 10757374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 182
Target Start/End: Original strand, 10970381 - 10970545
Alignment:
Q  20 attacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacc 115  Q
    ||||||||| ||||||||| ||||  |||||||||||||||||||| |||| |||||||||||||||||| ||||    | || ||||||||||||||||    
T  10970381 attacccatagcgccgccttaatag-tctctagaatcttctagaaaccgcc-ctaaatacataaatacccttattacttggagactaagcaaccaaaacc 10970478  T
Q  116 caagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    ||||||||| |||||||| ||||||||||||||||||||| |||| | |||||||| ||| ||||||    
T  10970479 caagcccatagaaggctacaaataccacccttgagaacacactcaaggatccaatattcagtctaaa 10970545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 24749259 - 24749316
Alignment:
Q  181 aaaccctagtatactgagaaaaccctaattctctttaccgtactttttcgacaagtac 238  Q
    ||||||||| |||| |||||| ||||||||||||| ||||||||||||||||||||||    
T  24749259 aaaccctagaataccgagaaacccctaattctcttcaccgtactttttcgacaagtac 24749316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 194
Target Start/End: Complemental strand, 7202871 - 7202776
Alignment:
Q  99 gctaagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    ||||||||||   ||||||||||||  | |||||||||||||||| || |||| || |||||| ||||||||| ||| |||||||||||| |||||    
T  7202871 gctaagcaacagtaacccaagcccaaagcaggctataaataccactctagagatcattctcagatatccaatagtcagtctaaaaccctaatatac 7202776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 28924763 - 28924698
Alignment:
Q  130 gctataaataccacccttgagaacactctca-ggtatccaataatcaatctaaaaccctagtatac 194  Q
    ||||||||||| ||| ||||||||| ||||| || |||||||||||| ||||||||||||||||||    
T  28924763 gctataaatactacctttgagaacattctcaaggcatccaataatcagtctaaaaccctagtatac 28924698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 30953217 - 30953310
Alignment:
Q  102 aagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactc-tcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    |||||||| |||||||||||||| | ||||||||||||| || ||||||| || || | ||  |||||||||||| | ||||||||||||||||    
T  30953217 aagcaaccgaaacccaagcccatagcaggctataaatactactcttgagatcattcttaagacatccaataatcagtataaaaccctagtatac 30953310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 722897 - 722937
Alignment:
Q  215 ttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  722897 ttaccgtactttttctgcaagtacagttggcgccgtctgtg 722937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 22763078 - 22763142
Alignment:
Q  131 ctataaataccacccttgagaacactctcaggt-atccaataatcaatctaaaaccctagtatac 194  Q
    ||||||||||||| ||||||| || |||||||  |||||||||||| ||||||| ||||||||||    
T  22763078 ctataaataccactcttgagatcattctcagggcatccaataatcagtctaaaatcctagtatac 22763142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 36250884 - 36250948
Alignment:
Q  119 gcccattgaaggctataaataccacccttgagaacactctc-aggtatccaataatcaatctaaa 182  Q
    |||||| ||||| |||||||||||| ||||||| || |||| ||| |||||||||||| ||||||    
T  36250884 gcccatagaaggttataaataccactcttgagatcattctcaaggcatccaataatcagtctaaa 36250948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 28 - 194
Target Start/End: Original strand, 31711100 - 31711268
Alignment:
Q  28 tggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagccca 123  Q
    ||||||||||| ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||    | || ||||||||||||||||||||| ||    
T  31711100 tggcgccgccttaataa-tctctagaatcttctagaaaccgcc-ctaaatacataaatacccctattacttggagactaagcaaccaaaacccaagctca 31711197  T
Q  124 ttgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||    
T  31711198 ttgaaggctataaataccacccttgagaacactctcaagtatctaataatcagtctaaaaccctagtatac 31711268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 44 - 194
Target Start/End: Original strand, 31708895 - 31709048
Alignment:
Q  44 aatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaata 139  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||    | || |||||||||||||||||||||||||||||| |||||||||    
T  31708895 aatctctagaatcttctagaaaccgcc-ctaaatacataaatacccctattacttggagactaagcaaccaaaacccaagcccattgaagactataaata 31708993  T
Q  140 ccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    ||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||    
T  31708994 ccacccttgagaacactctcaagtatctaataatcagtctaaaaccctagtatac 31709048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 21938576 - 21938748
Alignment:
Q  19 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaac 114  Q
    ||||| ||||||| |||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||| |||    | || |||||||||| |||     
T  21938576 cattatccatggcaccgcctcaataa-tctctagaatcttctagaaaccgcccctaaatacataaatacccccattacttggagactaagcaaccgaaat 21938674  T
Q  115 ccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaacccta 188  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  21938675 ccaagcccatagaaggctataaataccacccttgagaacactctcaggtatctaataatcagtctaaaacccta 21938748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 42 - 194
Target Start/End: Original strand, 14369718 - 14369873
Alignment:
Q  42 taaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaa 137  Q
    ||||||||||||| |||||||||| |||| ||||||||| |||||||||||||    | || |||||||||||||| |||||||||| ||||||||||||    
T  14369718 taaatctctagaaacttctagaaaccgcc-ctaaatacacaaatacccctattacttggagactaagcaaccaaaatccaagcccatagaaggctataaa 14369816  T
Q  138 taccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    ||||||||||||||||||||||| ||||| ||||| || || ||||||||| |||||    
T  14369817 taccacccttgagaacactctcaagtatctaataaacagtcaaaaaccctaatatac 14369873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 42 - 194
Target Start/End: Original strand, 14370269 - 14370424
Alignment:
Q  42 taaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaa 137  Q
    ||||||||||||| |||||||||| |||| ||||||||| |||||||||||||    | || |||||||||||||| |||||||||| ||||||||||||    
T  14370269 taaatctctagaaacttctagaaaccgcc-ctaaatacacaaatacccctattacttggagactaagcaaccaaaatccaagcccatagaaggctataaa 14370367  T
Q  138 taccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    ||||||||||||||||||||||| ||||| ||||| || || ||||||||| |||||    
T  14370368 taccacccttgagaacactctcaagtatctaataaacagtcaaaaaccctaatatac 14370424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 130 - 248
Target Start/End: Original strand, 36598421 - 36598539
Alignment:
Q  130 gctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatactgagaaaaccctaattctctttaccgtactttttc 229  Q
    |||||||||||||| || |||| || ||||| | ||| |||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  36598421 gctataaataccactctagagatcattctcaaggatcgaataatcagtctaaaaccctagtatacggagaaaaccctagttctctttaccgtactttttc 36598520  T
Q  230 gacaagtacagttggcgcc 248  Q
    |||||||||||||||||||    
T  36598521 gacaagtacagttggcgcc 36598539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 32 - 188
Target Start/End: Original strand, 21834802 - 21834960
Alignment:
Q  32 gccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattga 127  Q
    ||||||| | |||| |||||||| |||||||||| |||| |||||||| ||||||||||||||    | || |||||||||| |||||||||||||| ||    
T  21834802 gccgccttactaaacctctagaaccttctagaaaccgcc-ctaaatacctaaatacccctattacttggagactaagcaaccgaaacccaagcccataga 21834900  T
Q  128 aggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaacccta 188  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||| || |||||||||    
T  21834901 aggctataaataccacccttgagaacactctcaagtatccaatattcagtc-aaaacccta 21834960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 194
Target Start/End: Complemental strand, 20135079 - 20134924
Alignment:
Q  42 taaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaa 137  Q
    |||||||||||||  ||||| ||| |||| |||||||||||||||||||||||    | || |||||||||||| |||||||||||| ||||||||||||    
T  20135079 taaatctctagaaatttctataaaccgcc-ctaaatacataaatacccctattatttggagactaagcaaccaagacccaagcccatagaaggctataaa 20134981  T
Q  138 taccacccttgagaacactctcaggtatccaataatcaatct-aaaaccctagtatac 194  Q
    ||||||||||||||||| ||||| ||||| |||||||| ||| |||||||||||||||    
T  20134980 taccacccttgagaaca-tctcaagtatctaataatcagtctaaaaaccctagtatac 20134924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 42 - 194
Target Start/End: Original strand, 14366129 - 14366284
Alignment:
Q  42 taaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaa 137  Q
    ||||||||||||| |||||||||| |||| ||||||||| |||||||||||||    | || |||||||||||||| ||||||||||  |||||||||||    
T  14366129 taaatctctagaaacttctagaaaccgcc-ctaaatacacaaatacccctattacttggagactaagcaaccaaaatccaagcccatataaggctataaa 14366227  T
Q  138 taccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    ||||||||||||||||||||||| ||||  ||||| || || ||||||||| |||||    
T  14366228 taccacccttgagaacactctcaagtatgtaataaacagtcaaaaaccctaatatac 14366284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 171
Target Start/End: Original strand, 14673343 - 14673485
Alignment:
Q  32 gccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattga 127  Q
    ||||||| | |||| |||||||| |||||||||| |||| | |||||| |||||| |||||||    | || ||||||||||||||||||||||||| ||    
T  14673343 gccgccttactaaacctctagaaccttctagaaaccgcc-caaaatacctaaatatccctattacttggagactaagcaaccaaaacccaagcccataga 14673441  T
Q  128 aggctataaataccacccttgagaacactctcaggtatccaata 171  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  14673442 aggctataaataccacccttcagaacactctcaggtatccaata 14673485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 58 - 194
Target Start/End: Complemental strand, 20131940 - 20131799
Alignment:
Q  58 tctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaac 153  Q
    |||||||| |||| |||||||||||||||||||||||    | || |||||||||||| |||||||||||| |||| |||||||||||||||||||||||    
T  20131940 tctagaaaccgcc-ctaaatacataaatacccctattatttggagactaagcaaccaagacccaagcccatagaagactataaataccacccttgagaac 20131842  T
Q  154 actctcaggtatccaataatcaatctaaaa--ccctagtatac 194  Q
    ||||||| ||||| |||||||| |||||||  |||||||||||    
T  20131841 actctcaagtatctaataatcagtctaaaaacccctagtatac 20131799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 21936066 - 21936191
Alignment:
Q  19 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaac 114  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||    | || |||||||||| ||||    
T  21936066 cattatccatggcgccgcctcaataa-tctctagaatcttctagaaaccgcccctaaatacataaatacccctattacttggagactaagcaaccgaaac 21936164  T
Q  115 ccaagcccattgaaggctataaatacc 141  Q
    ||||| |||| ||||||||||||||||    
T  21936165 ccaagtccatagaaggctataaatacc 21936191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 128 - 240
Target Start/End: Original strand, 36602611 - 36602723
Alignment:
Q  128 aggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatactgagaaaaccctaattctctttaccgtactttt 227  Q
    |||||||||||||||| || |||| || ||||| | ||| |||||||| |||||||||||||||||| |||||||||| | |||||||||||||||||||    
T  36602611 aggctataaataccactctagagatcattctcaaggatcgaataatcagtctaaaaccctagtatacggagaaaaccccagttctctttaccgtactttt 36602710  T
Q  228 tcgacaagtacag 240  Q
    |||||||||||||    
T  36602711 tcgacaagtacag 36602723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 32 - 171
Target Start/End: Original strand, 14676549 - 14676691
Alignment:
Q  32 gccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattga 127  Q
    ||||||| | |||| |||||||| |||||||||| |||| | |||||| |||||| |||||||    | || ||||||||||||||||||||||||| ||    
T  14676549 gccgccttactaaacctctagaaccttctagaaaccgcc-caaaatacctaaatatccctattacttggagactaagcaaccaaaacccaagcccataga 14676647  T
Q  128 aggctataaataccacccttgagaacactctcaggtatccaata 171  Q
    |||||||||||||||||||| |||||||||||| ||||||||||    
T  14676648 aggctataaataccacccttcagaacactctcaagtatccaata 14676691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 58 - 188
Target Start/End: Original strand, 21408365 - 21408497
Alignment:
Q  58 tctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaac 153  Q
    |||||||| |||| |||||||| ||||||||||||||    | || |||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  21408365 tctagaaaccgcc-ctaaatacctaaatacccctattacttggagactaagcaaccgaaacccaagcccatagaaggctataaataccacccttgagaac 21408463  T
Q  154 actctcaggtatccaataatcaatctaaaacccta 188  Q
    ||||||| |||||||||| ||| || |||||||||    
T  21408464 actctcaagtatccaatattcagtc-aaaacccta 21408497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 58 - 188
Target Start/End: Original strand, 21802857 - 21802989
Alignment:
Q  58 tctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaac 153  Q
    |||||||| |||| |||||||| ||||||||||||||    | || |||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  21802857 tctagaaaccgcc-ctaaatacctaaatacccctattacttggagactaagcaaccgaaacccaagcccatagaaggctataaataccacccttgagaac 21802955  T
Q  154 actctcaggtatccaataatcaatctaaaacccta 188  Q
    ||||||| |||||||||| ||| || |||||||||    
T  21802956 actctcaagtatccaatattcagtc-aaaacccta 21802989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 162
Target Start/End: Complemental strand, 36281442 - 36281309
Alignment:
Q  32 gccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattga 127  Q
    ||||||| | |||| |||||||| |||||||| |||||| | |||||| ||||||||||||||    | || |||||||| |||||||||||||||| ||    
T  36281442 gccgccttactaaaactctagaaccttctagagatcgcc-caaaatacctaaatacccctattacttggagactaagcaatcaaaacccaagcccataga 36281344  T
Q  128 aggctataaataccacccttgagaacactctcagg 162  Q
     ||||||||||| ||||||||||||||||||||||    
T  36281343 gggctataaatatcacccttgagaacactctcagg 36281309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 101 - 182
Target Start/End: Original strand, 3303208 - 3303289
Alignment:
Q  101 taagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    |||||||||| ||||||||| ||| |||||||||||||||||| |||||||||||||||| |||||||||| ||| ||||||    
T  3303208 taagcaaccacaacccaagctcatagaaggctataaataccacacttgagaacactctcaagtatccaatattcagtctaaa 3303289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 3300140 - 3300222
Alignment:
Q  100 ctaagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    ||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||  || |||||||||| ||| ||||||    
T  3300140 ctaagcaaccaaaacccaagcccatagaagagtataaataccacccttgagaacacttccaagtatccaatattcagtctaaa 3300222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 25548070 - 25548113
Alignment:
Q  212 tctttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    ||||||||||||||||||  ||||||||||||||||||||||||    
T  25548070 tctttaccgtactttttctgcaagtacagttggcgccgtctgtg 25548113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 18973353 - 18973393
Alignment:
Q  215 ttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  18973353 ttaccgtactttttctgcaagtacagttggcgccgtctgtg 18973393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 25502741 - 25502781
Alignment:
Q  215 ttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  25502741 ttaccgtactttttctgcaagtacagttggcgccgtctgtg 25502781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 26908508 - 26908468
Alignment:
Q  215 ttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  26908508 ttaccgtactttttctgcaagtacagttggcgccgtctgtg 26908468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 188
Target Start/End: Complemental strand, 17526694 - 17526607
Alignment:
Q  102 aagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctca-ggtatccaataatcaatctaaaacccta 188  Q
    |||||||| |||||||||| |||   ||||||||||||| || ||||||| || ||||| || |||||||||||| ||||||| ||||    
T  17526694 aagcaaccgaaacccaagctcataacaggctataaatactactcttgagatcattctcagggcatccaataatcagtctaaaatccta 17526607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 16077887 - 16077829
Alignment:
Q  102 aagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctca 160  Q
    |||||||| |||||||||||||| | ||||||||||||| || ||||||| || |||||    
T  16077887 aagcaaccgaaacccaagcccatagcaggctataaatactactcttgagatcattctca 16077829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 44754261 - 44754315
Alignment:
Q  128 aggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    |||||||||||||||| || |||| || |||||| ||||||||||||| ||||||    
T  44754261 aggctataaataccactctagagatcattctcagatatccaataatcagtctaaa 44754315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 16083594 - 16083513
Alignment:
Q  102 aagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctc-aggtatccaataatcaatctaaa 182  Q
    |||||||| |||||||| | ||| | ||||||||||||| || ||||||| || |||| ||| ||||||| |||||||||||    
T  16083594 aagcaaccgaaacccaacctcatagcaggctataaatactactcttgagatcattctcaaggcatccaattatcaatctaaa 16083513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 16085001 - 16084920
Alignment:
Q  102 aagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctc-aggtatccaataatcaatctaaa 182  Q
    |||||||| |||||||| | ||| | ||||||||||||| || ||||||| || |||| ||| ||||||| |||||||||||    
T  16085001 aagcaaccgaaacccaacctcatagcaggctataaatactactcttgagatcattctcaaggcatccaattatcaatctaaa 16084920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 16086408 - 16086327
Alignment:
Q  102 aagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctc-aggtatccaataatcaatctaaa 182  Q
    |||||||| |||||||| | ||| | ||||||||||||| || ||||||| || |||| ||| ||||||| |||||||||||    
T  16086408 aagcaaccgaaacccaacctcatagcaggctataaatactactcttgagatcattctcaaggcatccaattatcaatctaaa 16086327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 16087815 - 16087734
Alignment:
Q  102 aagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctc-aggtatccaataatcaatctaaa 182  Q
    |||||||| |||||||| | ||| | ||||||||||||| || ||||||| || |||| ||| ||||||| |||||||||||    
T  16087815 aagcaaccgaaacccaacctcatagcaggctataaatactactcttgagatcattctcaaggcatccaattatcaatctaaa 16087734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 37718157 - 37718250
Alignment:
Q  102 aagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctc-aggtatccaataatcaatctaaaaccctagtatac 194  Q
    |||||||| |||||||||| |||   ||||||||||||  || ||||||| || |||| ||| ||| |||||||| ||||||||| ||||||||    
T  37718157 aagcaaccgaaacccaagctcataacaggctataaatagtactcttgagatcattctcaaggcatctaataatcagtctaaaaccttagtatac 37718250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 47 - 194
Target Start/End: Original strand, 4238 - 4388
Alignment:
Q  47 ctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaatacca 142  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    | || ||||||||||||||||||||||||| || ||||||||||||||    
T  4238 ctctagaatcttctagaaatcgcc-ctaaatacataaatacccctattacttggagactaagcaaccaaaacccaagcccatagagggctataaatacca 4336  T
Q  143 cccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    ||||||||||||||||||  |||| |||||||| ||||||||||||||||||    
T  4337 cccttgagaacactctcatctatctaataatcagtctaaaaccctagtatac 4388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 60 - 241
Target Start/End: Complemental strand, 8871 - 8686
Alignment:
Q  60 tagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacac 155  Q
    |||||| |||| ||||||||||||| |||||||||    | ||  ||||||||| |||||||||||||| ||||||||||||||| || ||||||| ||     
T  8871 tagaaaccgcccctaaatacataaacacccctattacttggagattaagcaaccgaaacccaagcccatagaaggctataaatactactcttgagatcat 8772  T
Q  156 tctcaggtatccaataatcaatctaaaaccctagtatactgagaaaaccctaattctctttaccgtactttttcgacaagtacagt 241  Q
    | ||| | |||| |||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8771 tgtcaaggatccgataatcaatgaaaaaccctagtatactgagaaaatcctaattctctttaccgtactttttcgacaagtacagt 8686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 47 - 194
Target Start/End: Original strand, 7547 - 7697
Alignment:
Q  47 ctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaatacca 142  Q
    ||||||||||||||||||| |||  |||||||||||||||||||||||    | || ||||||||||||||||||||||||| || ||||||||||||||    
T  7547 ctctagaatcttctagaaaccgcg-ctaaatacataaatacccctattacttggagactaagcaaccaaaacccaagcccatagagggctataaatacca 7645  T
Q  143 cccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    ||||||||||||||||||  ||||||||||||| ||||||||||||||||||    
T  7646 cccttgagaacactctcatctatccaataatcagtctaaaaccctagtatac 7697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 45 - 193
Target Start/End: Complemental strand, 1652 - 1501
Alignment:
Q  45 atctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaatac 140  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||    | || |||||||||| |||| ||||||||| |||||||||||||||    
T  1652 atctctagaatcttctagaaaccgcc-ctaaatacataaatacccctattacttggagactaagcaaccgaaactcaagcccatagaaggctataaatac 1554  T
Q  141 cacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtata 193  Q
    ||||||| |||||||||||| ||||| |||||||| |||||||||||||||||    
T  1553 cacccttaagaacactctcaagtatctaataatcagtctaaaaccctagtata 1501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 47 - 194
Target Start/End: Original strand, 194590 - 194740
Alignment:
Q  47 ctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaatacca 142  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||    | || ||||||||||||||||||||||||| ||  |||||||||||||    
T  194590 ctctagaatcttctagaaaccgcc-ctaaatacataaatacccctattacttggagactaagcaaccaaaacccaagcccatagagagctataaatacca 194688  T
Q  143 cccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    || |||||||||||||||  ||||||||||||| ||||||||||||||||||    
T  194689 ccattgagaacactctcatctatccaataatcagtctaaaaccctagtatac 194740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1778 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold1778
Description:

Target: scaffold1778; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 44 - 182
Target Start/End: Complemental strand, 1109 - 968
Alignment:
Q  44 aatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaata 139  Q
    ||||||||| |||||||||||| |||| |||||||||||||||||||||||    | || ||||||||||||||||||||||||| ||||||||||||||    
T  1109 aatctctaggatcttctagaaaccgcc-ctaaatacataaatacccctattacttggagactaagcaaccaaaacccaagcccatagaaggctataaata 1011  T
Q  140 ccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    ||||||||||||||||||||| |||||||||| ||| ||||||    
T  1010 ccacccttgagaacactctcaagtatccaatattcagtctaaa 968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 13170 - 12994
Alignment:
Q  20 attacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacc 115  Q
    |||| |||||||||||||||| ||| |||||| ||||||||||||| |||| |||||||||||||||||||||||    | || |||||||||| |||||    
T  13170 attatccatggcgccgcctcactaa-tctctaaaatcttctagaaaccgcc-ctaaatacataaatacccctattacttggagactaagcaaccgaaacc 13073  T
Q  116 caagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    ||||||||| | |||||||||||||||||||||||||||||||||  ||||||| ||| | ||||||||||||| ||||    
T  13072 caagcccataggaggctataaataccacccttgagaacactctcatctatccaagaattagtctaaaaccctagcatac 12994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 44 - 194
Target Start/End: Original strand, 27485 - 27638
Alignment:
Q  44 aatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaata 139  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||    | |  ||||| |||| |||||||||||||| ||||||||||||||    
T  27485 aatctctagaatcttctagaaaccgcc-ctaaatacataaatacccctattacttggaaactaagtaaccgaaacccaagcccatagaaggctataaata 27583  T
Q  140 ccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    ||| |||||||||||||||||  |||||||||||||||||||||||||| |||||    
T  27584 ccatccttgagaacactctcaaatatccaataatcaatctaaaaccctaatatac 27638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 58 - 188
Target Start/End: Original strand, 24840 - 24973
Alignment:
Q  58 tctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaac 153  Q
    |||||||| ||||| ||||||||||||||||||||||    | |  ||||| |||| |||||||||||||| ||||||||||||||||||||||||||||    
T  24840 tctagaaaccgcct-taaatacataaatacccctattacttggaaactaagtaaccgaaacccaagcccatagaaggctataaataccacccttgagaac 24938  T
Q  154 actctcaggtatccaataatcaatctaaaacccta 188  Q
    ||||||| |||||||||||||| ||||||||||||    
T  24939 actctcaagtatccaataatcagtctaaaacccta 24973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 12001 - 12167
Alignment:
Q  29 ggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccat 124  Q
    |||| ||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||    | || |||||||||| ||| ||||||||||    
T  12001 ggcgtcgcctcaataa-tctctagaatcttctagaaaccgcc-ctaaatacataaatacccctattacttggagactaagcaaccgaaatccaagcccat 12098  T
Q  125 tgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtata 193  Q
     ||||||||||||||||| ||||||  |||||||||| ||||||||||||| |||||||||||| ||||    
T  12099 agaaggctataaataccatccttgaacacactctcagatatccaataatcagtctaaaaccctaatata 12167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 9e-39; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 45 - 183
Target Start/End: Complemental strand, 12020366 - 12020225
Alignment:
Q  45 atctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaatac 140  Q
    ||||||||||| ||||||||| |||| |||||||||||||||||||||||    | || |||||||||| |||||||||||||| |||||||||||||||    
T  12020366 atctctagaatattctagaaaccgcc-ctaaatacataaatacccctattacttggagactaagcaaccgaaacccaagcccatagaaggctataaatac 12020268  T
Q  141 cacccttgagaacactctcaggtatccaataatcaatctaaaa 183  Q
    |||||||||||||||||||| ||||| |||||||| |||||||    
T  12020267 cacccttgagaacactctcaagtatctaataatcagtctaaaa 12020225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 18433154 - 18433331
Alignment:
Q  17 cacattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaa 112  Q
    ||||||| ||||| |||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| |||||||    | || ||||||||||  |    
T  18433154 cacattatccatgacgccgcctcaataa-tctctagaatcttctagaaaccgcccctaaatacataaataaccctattacttggagactaagcaaccgga 18433252  T
Q  113 acccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    |||||||||||| |||| ||||||||||||||  |||||||||||||||||||| |||||| | ||||||| ||||||||||    
T  18433253 acccaagcccatagaagactataaataccacc--tgagaacactctcaggtatctaataattagtctaaaa-cctagtatac 18433331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 45 - 193
Target Start/End: Complemental strand, 24276970 - 24276819
Alignment:
Q  45 atctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaatac 140  Q
    |||||| |||||||||| ||| |||| ||||| |||||||||||||||||    | || ||||||||||||||||||| ||||| |||||||||||||||    
T  24276970 atctctcgaatcttctaaaaaccgcc-ctaaaaacataaatacccctattacttggagactaagcaaccaaaacccaaacccatagaaggctataaatac 24276872  T
Q  141 cacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtata 193  Q
    |||||||||||||||||||| ||||| |||||||| ||| |||||||||||||    
T  24276871 cacccttgagaacactctcaagtatcgaataatcagtcttaaaccctagtata 24276819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 45 - 193
Target Start/End: Complemental strand, 24281083 - 24280932
Alignment:
Q  45 atctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaatac 140  Q
    |||||||||||||||| ||||  ||| ||||| |||||||||||||||||    | || ||||||||||||||||||||||||| ||||||||||||||     
T  24281083 atctctagaatcttctggaaactgcc-ctaaaaacataaatacccctattacttggagactaagcaaccaaaacccaagcccatagaaggctataaatat 24280985  T
Q  141 cacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtata 193  Q
    |||||||||||||||| ||| ||||| |||||||| ||| |||||||||||||    
T  24280984 cacccttgagaacactttcaagtatcgaataatcagtcttaaaccctagtata 24280932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 19749484 - 19749654
Alignment:
Q  19 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaac 114  Q
    |||||||||| ||||||||  | ||| |||||||||||||||||||| |||| |||||||||||||||||||||||    | || |||||||||||| ||    
T  19749484 cattacccatagcgccgccatactaa-tctctagaatcttctagaaaccgcc-ctaaatacataaatacccctattacttggagactaagcaaccaagac 19749581  T
Q  115 ccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaacccta 188  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||  ||||| |||| ||| || |||||||||    
T  19749582 ccaagcccatagaaggctataaataccacctttgagaacactctcgagtatctaatattcagtc-aaaacccta 19749654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 19751710 - 19751880
Alignment:
Q  19 cattacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaac 114  Q
    |||||||||| ||||||||  | ||| |||||||||||||||||||| |||| |||||||||||||||||||||||    | || ||||| |||||| ||    
T  19751710 cattacccatagcgccgccatactaa-tctctagaatcttctagaaaccgcc-ctaaatacataaatacccctattacttggagactaagaaaccaagac 19751807  T
Q  115 ccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaacccta 188  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||  |||||||||| ||| || |||||||||    
T  19751808 ccaagcccatagaaggctataaataccacctttgagaacactctcgagtatccaatattcagtc-aaaacccta 19751880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 44 - 194
Target Start/End: Original strand, 20442498 - 20442652
Alignment:
Q  44 aatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaata 139  Q
    ||||||||||| |||||||||  |||| |||||||| ||||| ||||||||    | |  ||||||||||||||||||||| ||| ||||||||||||||    
T  20442498 aatctctagaaacttctagaagccgcc-ctaaatacttaaatgcccctattacttggaaactaagcaaccaaaacccaagctcatagaaggctataaata 20442596  T
Q  140 ccacccttgagaacactctcaggtatccaataatcaatct-aaaaccctagtatac 194  Q
    ||||||||||||||||||||| ||||| |||||||| ||| |||||||||||||||    
T  20442597 ccacccttgagaacactctcaagtatctaataatcagtctaaaaaccctagtatac 20442652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 44 - 194
Target Start/End: Original strand, 20514359 - 20514513
Alignment:
Q  44 aatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt-----gaaggctaagcaaccaaaacccaagcccattgaaggctataaat 138  Q
    ||||||||||| |||||||||  |||| |||||||| ||||| ||||||||     ||| | |||||||||||||||||||| ||| |||||||||||||    
T  20514359 aatctctagaaacttctagaagccgcc-ctaaatacttaaatgcccctattacttggaaag-taagcaaccaaaacccaagctcatagaaggctataaat 20514456  T
Q  139 accacccttgagaacactctcaggtatccaataatcaatct-aaaaccctagtatac 194  Q
    |||||||||||||||||||||| ||||| |||||||| ||| |||||||||||||||    
T  20514457 accacccttgagaacactctcaagtatctaataatcagtctaaaaaccctagtatac 20514513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 15158159 - 15158088
Alignment:
Q  100 ctaagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaata 171  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  15158159 ctaagcaaccaaaacccaagcccatagaaggctataaataccacccttgagaacactctcaagtatccaata 15158088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 15142733 - 15142662
Alignment:
Q  100 ctaagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaata 171  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||    
T  15142733 ctaagcaaccaaaacccaagcccatagaaggctataaataccacccttgagaacactcttaagtatccaata 15142662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 36910612 - 36910496
Alignment:
Q  45 atctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaatac 140  Q
    ||||||||||||||||||||| |||||     |||| |||||||||||||    |  | ||||||||||||||| ||||||||   ||||||||||||||    
T  36910612 atctctagaatcttctagaaaccgcct-----tacacaaatacccctattacttggggactaagcaaccaaaactcaagcccacgaaaggctataaatac 36910518  T
Q  141 cacccttgagaacactctcagg 162  Q
    |||| |||||||||||||||||    
T  36910517 cacctttgagaacactctcagg 36910496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 151
Target Start/End: Complemental strand, 20435384 - 20435263
Alignment:
Q  33 ccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaa 128  Q
    |||||| | |||| |||||||||||||||||||  |||  ||||||| ||||||||  ||||    | || ||||||||| ||||||||||||||| |||    
T  20435384 ccgccttactaaacctctagaatcttctagaaacagcca-taaatacctaaatacctttattacttggagactaagcaactaaaacccaagcccatagaa 20435286  T
Q  129 ggctataaataccacccttgaga 151  Q
    |||||||||||||||| ||||||    
T  20435285 ggctataaataccaccattgaga 20435263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 20194899 - 20194990
Alignment:
Q  102 aagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctc-aggtatccaataatcaatct-aaaaccctagta 191  Q
    |||||||| |||| ||||||||| | ||||||||||||||| ||||||||||| |||| ||| |||||||| ||| ||| ||||||||||||    
T  20194899 aagcaaccgaaactcaagcccatagcaggctataaataccagccttgagaacattctcaaggcatccaatattcagtctaaaaaccctagta 20194990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 546105 - 546062
Alignment:
Q  212 tctttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    ||||||||||||||||||  ||||||||||||||||||||||||    
T  546105 tctttaccgtactttttctgcaagtacagttggcgccgtctgtg 546062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 555390 - 555347
Alignment:
Q  212 tctttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    ||||||||||||||||||  ||||||||||||||||||||||||    
T  555390 tctttaccgtactttttctgcaagtacagttggcgccgtctgtg 555347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 19913780 - 19913737
Alignment:
Q  212 tctttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    ||||||||||||||||||  |||||||||||||||||| |||||    
T  19913780 tctttaccgtactttttctgcaagtacagttggcgccgactgtg 19913737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 42 - 194
Target Start/End: Original strand, 149873 - 150030
Alignment:
Q  42 taaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaa 137  Q
    ||||||||||||| |||||||||  |  | |||||||| ||||| ||||||||    | || ||||||||||||||||||||||||| ||||||||||||    
T  149873 taaatctctagaaacttctagaagcccgccctaaatacttaaatgcccctattacttggagactaagcaaccaaaacccaagcccatagaaggctataaa 149972  T
Q  138 taccacccttgagaacactctcaggtatccaataatcaatctaaa-accctagtatac 194  Q
    |||||||||||||||||||||||| |||| |||||||| |||||| ||||||||||||    
T  149973 taccacccttgagaacactctcagatatctaataatcagtctaaataccctagtatac 150030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 194
Target Start/End: Original strand, 146668 - 146823
Alignment:
Q  44 aatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaata 139  Q
    ||||||||||| |||||||||  |  | |||||||| ||||| ||||||||    |||| ||||||||||||||||||||| ||| ||||||||||||||    
T  146668 aatctctagaaacttctagaagcccgccctaaatacttaaatgcccctattacttgaagactaagcaaccaaaacccaagctcatagaaggctataaata 146767  T
Q  140 ccacccttgagaacactctcaggtatccaataatcaatct-aaaaccctagtatac 194  Q
    |||||||||||||||||||||| |||| |||||||| ||| |||||||||||||||    
T  146768 ccacccttgagaacactctcagatatctaataatcagtctaaaaaccctagtatac 146823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 182
Target Start/End: Complemental strand, 3064 - 2901
Alignment:
Q  22 tacccatggcgccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaaccca 117  Q
    |||||| |||||||||||||||| |||||||||||||||||||| |||| | |||||||||||||||||||||    | || |||||||||| ||| |||    
T  3064 tacccacggcgccgcctcaataa-tctctagaatcttctagaaaccgccccaaaatacataaatacccctattacttggagactaagcaaccgaaatcca 2966  T
Q  118 agcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    |||||||  ||||||||||||||| |||||||||| |||||| || ||| |||||||| ||||||    
T  2965 agcccatacaaggctataaatacctcccttgagaagactctcgggcatcgaataatcagtctaaa 2901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 194
Target Start/End: Original strand, 78669 - 78821
Alignment:
Q  44 aatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaata 139  Q
    ||||||||||| |||||||||  |||| |||||||| |||||  |||||||    | || ||||||||||||||||||||||||| ||||||||||||||    
T  78669 aatctctagaaacttctagaagccgcc-ctaaatacttaaatgtccctattacttggagactaagcaaccaaaacccaagcccatagaaggctataaata 78767  T
Q  140 ccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    ||||||||||||||||||||| ||||| |||||||| |  |||||||||||||||    
T  78768 ccacccttgagaacactctcaagtatctaataatcagt-aaaaaccctagtatac 78821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1555 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold1555
Description:

Target: scaffold1555; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 131 - 240
Target Start/End: Original strand, 1413 - 1522
Alignment:
Q  131 ctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatactgagaaaaccctaattctctttaccgtactttttcg 230  Q
    ||||||||||||| || |||| || ||||| | ||| |||||||| |||||||||||||||||| |||||||||| | ||||||||||||||||||||||    
T  1413 ctataaataccactctagagatcattctcaaggatcgaataatcagtctaaaaccctagtatacggagaaaaccccagttctctttaccgtactttttcg 1512  T
Q  231 acaagtacag 240  Q
    ||||||||||    
T  1513 acaagtacag 1522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 10595 - 10442
Alignment:
Q  44 aatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaata 139  Q
    |||||||||||||||||||||| |||| |||||| ||||||||||||||||    | || |||||||||| ||| |||| ||||| |||||| |||||||    
T  10595 aatctctagaatcttctagaaaccgcc-ctaaatgcataaatacccctattacttggagactaagcaaccgaaatccaatcccatagaaggccataaata 10497  T
Q  140 ccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    ||| ||||||  |||||||||| ||||||||||||| ||||||||| || |||||    
T  10496 ccatccttgaacacactctcagatatccaataatcagtctaaaaccttaatatac 10442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 175
Target Start/End: Original strand, 56479 - 56615
Alignment:
Q  42 taaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaa 137  Q
    |||| |||||||| |||||||||| |||| | |||||| ||||||||||||||    | || |||||||||||||| |||||| ||| ||||||||||||    
T  56479 taaacctctagaaccttctagaaaccgcc-caaaatacctaaatacccctattacttggagactaagcaaccaaaatccaagctcatagaaggctataaa 56577  T
Q  138 taccacccttgagaacactctcaggtatccaataatca 175  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  56578 taccacccttgagaacactctcaagtatctaataatca 56615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 30250 - 30317
Alignment:
Q  172 atcaatctaaaaccctagtatactgagaaaaccctaattctctttaccgtactttttcgacaagtaca 239  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30250 atcagtctaaaaccctagtatactgagaaaaccctaattctctttaccgtactttttcgacaagtaca 30317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 35557 - 35624
Alignment:
Q  172 atcaatctaaaaccctagtatactgagaaaaccctaattctctttaccgtactttttcgacaagtaca 239  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35557 atcagtctaaaaccctagtatactgagaaaaccctaattctctttaccgtactttttcgacaagtaca 35624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 15062 - 14980
Alignment:
Q  100 ctaagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| ||| ||||||    
T  15062 ctaagcaaccaaaacccaagcccatagaaggctataaataccacccttgagagcactctcaagtatccaatattcagtctaaa 14980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 19132 - 19021
Alignment:
Q  32 gccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattga 127  Q
    ||||||| | |||| |||||||| |||||||| |||| | | |||||| ||||||||| ||||    | || ||||||||||||||||||||| ||| ||    
T  19132 gccgccttactaaacctctagaaccttctagagatcgtc-caaaatacctaaatacccttattacttggagactaagcaaccaaaacccaagctcataga 19034  T
Q  128 aggctataaatac 140  Q
    |||||||||||||    
T  19033 aggctataaatac 19021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 194
Target Start/End: Complemental strand, 44453 - 44367
Alignment:
Q  108 ccaaaacccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaaaccctagtatac 194  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||| |||||    
T  44453 ccaaaacccaagcccatagaaggttataaataccacccttgagaacactctcaagtatccaatagtcagtctaaaaccctaatatac 44367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 182
Target Start/End: Complemental strand, 14011 - 13858
Alignment:
Q  32 gccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattga 127  Q
    ||||||| | |||| |||||||| |||||||| |||||| | |||||| ||||||||| ||||    | |  ||||||||||||||||||||||||| ||    
T  14011 gccgccttactaaacctctagaaccttctagagatcgcc-caaaatacctaaatacccttattacttggatactaagcaaccaaaacccaagcccataga 13913  T
Q  128 aggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    |||||||||||||||||||||||| ||||||||  |||| |||| ||| ||||||    
T  13912 aggctataaataccacccttgagagcactctcaaatatctaatattcagtctaaa 13858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 182
Target Start/End: Complemental strand, 10524 - 10371
Alignment:
Q  32 gccgcctcaataaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattga 127  Q
    ||||||| | |||| |||||||| |||||||| |||||||  |||||| ||||||||| ||||    | |  ||||||||||||||||||||||||| ||    
T  10524 gccgccttactaaacctctagaaccttctagagatcgccta-aaatacctaaatacccttattacttggatactaagcaaccaaaacccaagcccataga 10426  T
Q  128 aggctataaataccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    |||||||||||||||||||| ||| ||||||||  |||| |||| ||| ||||||    
T  10425 aggctataaataccacccttaagagcactctcaaatatctaatattcagtctaaa 10371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1505 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold1505
Description:

Target: scaffold1505; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 42 - 182
Target Start/End: Complemental strand, 564 - 421
Alignment:
Q  42 taaatctctagaatcttctagaaatcgcctctaaatacataaatacccctatt----gaaggctaagcaaccaaaacccaagcccattgaaggctataaa 137  Q
    |||| ||||||||||||||||||| |||| | |||  | ||||||||||||||    | || |||||||||| || ||||||||||| |||| |||||||    
T  564 taaacctctagaatcttctagaaaccgcc-caaaaggcctaaatacccctattacttggagactaagcaaccgaagcccaagcccatagaagactataaa 466  T
Q  138 taccacccttgagaacactctcaggtatccaataatcaatctaaa 182  Q
    ||||||||||||||||||||||| | |||||||| ||| ||||||    
T  465 taccacccttgagaacactctcaagcatccaatattcagtctaaa 421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 3973 - 3880
Alignment:
Q  102 aagcaaccaaaacccaagcccattgaaggctataaataccacccttgagaacactctc-aggtatccaataatcaatctaaaaccctagtatac 194  Q
    |||||||| ||||||||||||||   ||||||||||||| || ||||||| || |||| ||| ||||||||  || |||||||||||| |||||    
T  3973 aagcaaccgaaacccaagcccataacaggctataaatactacacttgagatcattctcaaggcatccaatagacagtctaaaaccctaatatac 3880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 36549 - 36598
Alignment:
Q  191 atactgagaaaaccctaattctctttaccgtactttttcgacaagtacag 240  Q
    ||||| |||||| | || ||||||||||||||||||||||||||||||||    
T  36549 atactaagaaaaacttagttctctttaccgtactttttcgacaagtacag 36598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 245327 - 245367
Alignment:
Q  215 ttaccgtactttttcgacaagtacagttggcgccgtctgtg 255  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  245327 ttaccgtactttttctgcaagtacagttggcgccgtctgtg 245367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 147481 - 147418
Alignment:
Q  112 aacccaagcccattgaaggctataaataccacccttgagaacactctcaggtatccaataatca 175  Q
    ||||||||||||| | |||||||||||||||| || |||| || ||||| | ||||||||||||    
T  147481 aacccaagcccatagcaggctataaataccactctagagatcattctcaagcatccaataatca 147418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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