View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_77 (Length: 270)
Name: NF1441_low_77
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_77 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 6191367 - 6191119
Alignment:
| Q |
1 |
gggaaagacaattttgatgagaccaagcaatcagaaggaaaaccaaatatacaaggaggacaggttattgttcccgacaccactgatccaataagtaaag |
100 |
Q |
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| T |
6191367 |
gggaaagacaattttgatgagaccaagcaatcagaaggaaaaccaaatatacaagga---caggttattgttcccgacaccactgatccaataagtaaag |
6191271 |
T |
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| Q |
101 |
aaaattcaccaatggatctaagaaactttgaagatgaatcagatgaggacccttttgctgaacttgagagcatcctgctgggaagtccagagtctccgcc |
200 |
Q |
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| T |
6191270 |
aaaattcaccaatggatctaagaaactttgaagatgaatcagatgaggacccttttgctgaacttgagagcatcctgctgggaagtccagagtctccgcc |
6191171 |
T |
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| Q |
201 |
aaaagcaacctgttccacaagtgatgatgttgctgtaaaagaagctttgcac |
252 |
Q |
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| T |
6191170 |
aaaagtaacctgttccacaagtgatgatgttgctgtaaaagaagctttgcac |
6191119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 129 - 251
Target Start/End: Complemental strand, 6184231 - 6184112
Alignment:
| Q |
129 |
tgaagatgaatcagatgaggacccttttgctgaacttgagagcatcctgctgggaagtccagagtctccgccaaaagcaacctgttccacaagtgatgat |
228 |
Q |
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| T |
6184231 |
tgaagatggatcagatgatgacccttttgctgaacttgatagcatcctgttgggaagtccagagtcctcgccaaaagcaacctgttccacaag---cgat |
6184135 |
T |
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| Q |
229 |
gttgctgtaaaagaagctttgca |
251 |
Q |
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| T |
6184134 |
gttgctgtaagagaagccttgca |
6184112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 6184372 - 6184282
Alignment:
| Q |
6 |
agacaattttgatgagaccaagcaatcagaaggaaaaccaaatatacaaggaggacaggttattgttcccgacaccactgatccaataagt |
96 |
Q |
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| T |
6184372 |
agacaattgtgatgagaccaagaatccagaagaaaaaccaaacatacaaggagaacaaatcattgttcctgaaaccaatgatctgataagt |
6184282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 37454249 - 37454485
Alignment:
| Q |
15 |
tgatgagaccaagcaatcagaaggaaaaccaaatatacaaggaggacaggttattgttcccgacaccactgatccaataagtaaagaaaattcaccaatg |
114 |
Q |
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| T |
37454249 |
tgatgagaccaagcaatcaaaaggaaaagcaaatatacaaggaggacaagttattgttcctgacaccaatggttcaataagcaaagaaaaggcaccggtg |
37454348 |
T |
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| Q |
115 |
gatctaagaaactttgaagatgaatcagatgaggacccttttgctgaacttgagagcatcctgctgggaagtccagagtctccgccaaaagcaacctgtt |
214 |
Q |
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| T |
37454349 |
gatcttagcaaatccgaagatggatctgacgaggacattttttctgaagttgagaggatcctgaagggaagtccagagtcctcgccaaaagcaacttgtt |
37454448 |
T |
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| Q |
215 |
ccacaagtgatgatgttgctgtaaaagaagctttgca |
251 |
Q |
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| T |
37454449 |
ccacaagcgatgatgttgctgtaagagaagctttgca |
37454485 |
T |
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