View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441_low_78 (Length: 269)

Name: NF1441_low_78
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441_low_78
NF1441_low_78
[»] chr7 (20 HSPs)
chr7 (1-202)||(35742992-35743193)
chr7 (203-251)||(725657-725705)
chr7 (203-251)||(44459427-44459475)
chr7 (202-251)||(4859570-4859619)
chr7 (203-251)||(46555615-46555663)
chr7 (203-242)||(5374616-5374655)
chr7 (205-251)||(20119874-20119920)
chr7 (14-63)||(35749376-35749425)
chr7 (203-251)||(16277697-16277745)
chr7 (203-251)||(41336117-41336165)
chr7 (204-251)||(41858677-41858724)
chr7 (202-242)||(9663731-9663771)
chr7 (203-251)||(48952300-48952348)
chr7 (202-244)||(28589733-28589775)
chr7 (212-242)||(48683073-48683103)
chr7 (205-242)||(17968440-17968477)
chr7 (203-244)||(33978695-33978736)
chr7 (203-236)||(48607762-48607795)
chr7 (203-251)||(40015808-40015856)
chr7 (202-242)||(41289701-41289740)
[»] chr3 (25 HSPs)
chr3 (203-261)||(37785253-37785311)
chr3 (205-251)||(44843363-44843409)
chr3 (202-251)||(4233213-4233262)
chr3 (203-244)||(37220278-37220319)
chr3 (202-251)||(50548659-50548708)
chr3 (203-251)||(6177376-6177424)
chr3 (203-251)||(13213286-13213334)
chr3 (203-251)||(22604711-22604759)
chr3 (203-251)||(30043656-30043704)
chr3 (201-251)||(53845124-53845174)
chr3 (203-251)||(15084736-15084784)
chr3 (203-251)||(23019678-23019726)
chr3 (207-251)||(40905999-40906043)
chr3 (198-242)||(51722996-51723040)
chr3 (205-244)||(45169817-45169856)
chr3 (203-244)||(8852322-8852363)
chr3 (206-251)||(11121075-11121120)
chr3 (203-251)||(27320852-27320900)
chr3 (207-242)||(3892857-3892892)
chr3 (208-251)||(27239227-27239270)
chr3 (216-251)||(37785292-37785327)
chr3 (204-242)||(40423500-40423538)
chr3 (203-251)||(2217871-2217919)
chr3 (204-244)||(41101505-41101545)
chr3 (203-251)||(42825855-42825903)
[»] chr1 (14 HSPs)
chr1 (194-256)||(33704394-33704456)
chr1 (201-250)||(30838873-30838922)
chr1 (203-251)||(36307652-36307700)
chr1 (203-240)||(21096641-21096678)
chr1 (203-251)||(10772541-10772589)
chr1 (202-242)||(51086565-51086605)
chr1 (204-242)||(35954226-35954264)
chr1 (202-242)||(25655664-25655704)
chr1 (203-242)||(29522087-29522126)
chr1 (201-251)||(31029890-31029940)
chr1 (198-244)||(44512560-44512606)
chr1 (205-250)||(7152718-7152762)
chr1 (203-244)||(24780868-24780909)
chr1 (203-251)||(30303112-30303159)
[»] chr6 (11 HSPs)
chr6 (202-251)||(11837811-11837860)
chr6 (203-251)||(14103784-14103832)
chr6 (203-251)||(23580078-23580126)
chr6 (200-242)||(24082988-24083030)
chr6 (202-251)||(17551041-17551090)
chr6 (211-251)||(4590035-4590075)
chr6 (203-251)||(27438205-27438253)
chr6 (202-251)||(27782258-27782307)
chr6 (203-242)||(12142879-12142918)
chr6 (201-242)||(24178616-24178657)
chr6 (203-251)||(11154847-11154895)
[»] chr5 (13 HSPs)
chr5 (202-251)||(39588252-39588301)
chr5 (202-251)||(42612416-42612465)
chr5 (203-251)||(745761-745809)
chr5 (203-251)||(27020241-27020289)
chr5 (203-242)||(37270239-37270278)
chr5 (201-251)||(12499211-12499261)
chr5 (203-251)||(9591605-9591653)
chr5 (203-251)||(37940149-37940197)
chr5 (203-242)||(34401510-34401549)
chr5 (203-251)||(19664757-19664805)
chr5 (203-242)||(31552323-31552362)
chr5 (14-44)||(16865281-16865311)
chr5 (203-244)||(825001-825042)
[»] chr2 (11 HSPs)
chr2 (202-251)||(77764-77813)
chr2 (202-251)||(38282428-38282477)
chr2 (203-251)||(3907070-3907118)
chr2 (203-251)||(14006215-14006263)
chr2 (203-242)||(2292516-2292555)
chr2 (203-242)||(15152371-15152410)
chr2 (205-242)||(28391976-28392013)
chr2 (203-236)||(37726098-37726131)
chr2 (203-242)||(4738437-4738476)
chr2 (199-242)||(15398804-15398847)
chr2 (203-242)||(27551771-27551810)
[»] chr8 (19 HSPs)
chr8 (203-251)||(15883588-15883636)
chr8 (202-251)||(27911880-27911929)
chr8 (202-251)||(27958299-27958348)
chr8 (195-251)||(18955085-18955141)
chr8 (203-251)||(25583777-25583825)
chr8 (203-251)||(17948669-17948717)
chr8 (203-242)||(3846499-3846538)
chr8 (207-250)||(4622916-4622959)
chr8 (203-242)||(6093182-6093221)
chr8 (205-244)||(17853454-17853493)
chr8 (201-251)||(2082445-2082495)
chr8 (202-251)||(23347310-23347359)
chr8 (202-251)||(44255952-44256001)
chr8 (203-251)||(276577-276625)
chr8 (203-251)||(639224-639272)
chr8 (203-251)||(825030-825078)
chr8 (194-225)||(3705296-3705327)
chr8 (203-242)||(38577225-38577264)
chr8 (216-250)||(38099286-38099320)
[»] chr4 (18 HSPs)
chr4 (201-251)||(41041625-41041675)
chr4 (203-244)||(20354264-20354305)
chr4 (203-244)||(23419496-23419537)
chr4 (203-251)||(4652786-4652834)
chr4 (203-251)||(7487061-7487109)
chr4 (202-244)||(17360960-17361002)
chr4 (203-244)||(54919226-54919267)
chr4 (202-242)||(16664481-16664521)
chr4 (203-251)||(17520113-17520160)
chr4 (203-242)||(31292792-31292831)
chr4 (203-242)||(50496321-50496360)
chr4 (204-242)||(34072854-34072892)
chr4 (202-242)||(13534755-13534795)
chr4 (203-251)||(20787224-20787271)
chr4 (203-242)||(35824323-35824362)
chr4 (200-251)||(52447196-52447247)
chr4 (211-244)||(43940415-43940448)
chr4 (203-251)||(46717533-46717580)
[»] scaffold0115 (1 HSPs)
scaffold0115 (205-250)||(20718-20763)
[»] scaffold0003 (1 HSPs)
scaffold0003 (203-251)||(49109-49157)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 35742992 - 35743193
Alignment:
Q  1 ctcttgatcggaaagagtcataagtgaactacaaattcaagcaagcagaagtgtaaatattacgatatgacttcaaaataccgatgcaacacaagaaata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  35742992 ctcttgatcggaaagagtcataagtgaactacaaattcaagcaagcagaagtgtaaatattacgatctgacttcaaaatactgatgcaacacaagaaata 35743091  T
Q  101 tcagaagagtcaatgcaaaatctaactttgaatgccctaataataacaaatcatagtgatcaatcatgaatacaaaatctaactttgatgccctaataaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35743092 tcagaagagtcaatgcaaaatctaactttgaatgccctaataataacaaatcatagtgatcaatcatgaatacaaaatctaactttgatgccctaataaa 35743191  T
Q  201 at 202  Q
    ||    
T  35743192 at 35743193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 725705 - 725657
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  725705 ggtgaggcctacgttaccctctcttgtttagagggtaatttaccctctc 725657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 44459475 - 44459427
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44459475 ggtgaggcctacgttaccctctcttgtttagagggtaatttaccctctc 44459427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 4859570 - 4859619
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  4859570 tggtgaggcctatgttaccctctcttgtttagagggtaatttaccctctc 4859619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 46555663 - 46555615
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||    
T  46555663 ggtgaagcttacgttaccctctcttgtttagagggtaatttatcctctc 46555615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 5374655 - 5374616
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5374655 ggtgaggcctacgttaccctctcttgtttagagggtaatt 5374616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 20119874 - 20119920
Alignment:
Q  205 tgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||    
T  20119874 tgaggtctacgttaccctctcttgtttagagggtaatttaccctctc 20119920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 35749376 - 35749425
Alignment:
Q  14 agagtcataagtgaactacaaattcaagcaagcagaagtgtaaatattac 63  Q
    |||||||||||  ||||||||||||||||||||| |||||||||||||||    
T  35749376 agagtcataaggtaactacaaattcaagcaagcacaagtgtaaatattac 35749425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 16277745 - 16277697
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||| ||||||||||| |||||||||||||||||||||||| ||||||    
T  16277745 ggtgaagcctacgttactctctcttgtttagagggtaatttaccctctc 16277697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 41336117 - 41336165
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  41336117 ggtgaggtctatcttaccctctcttgtttagagggtaatttatcctctc 41336165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 251
Target Start/End: Complemental strand, 41858724 - 41858677
Alignment:
Q  204 gtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||| |||| |||||||||||||||||||||||||||||| ||||||    
T  41858724 gtgagacctatgttaccctctcttgtttagagggtaatttaccctctc 41858677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 9663771 - 9663731
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    ||||||||||||  |||||||||||||||||||||||||||    
T  9663771 tggtgaggcctatattaccctctcttgtttagagggtaatt 9663731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 48952348 - 48952300
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||| |||||||||| |||||||||||| ||||||||||| ||||||    
T  48952348 ggtgagacctacgttactctctcttgtttatagggtaatttaccctctc 48952300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 28589775 - 28589733
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaattta 244  Q
    ||||||| |||||||||| ||||||||||||||| ||||||||    
T  28589775 tggtgagacctacgttacactctcttgtttagagagtaattta 28589733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 242
Target Start/End: Original strand, 48683073 - 48683103
Alignment:
Q  212 tacgttaccctctcttgtttagagggtaatt 242  Q
    |||||||||||||||||||||||||||||||    
T  48683073 tacgttaccctctcttgtttagagggtaatt 48683103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 17968477 - 17968440
Alignment:
Q  205 tgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  17968477 tgaggcctacgttatcctctcttatttagagggtaatt 17968440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 33978695 - 33978736
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaattta 244  Q
    |||||||||||  ||||||||||||||||| |||||||||||    
T  33978695 ggtgaggcctagattaccctctcttgtttatagggtaattta 33978736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 48607795 - 48607762
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagg 236  Q
    |||||||||||||||||||||| |||||||||||    
T  48607795 ggtgaggcctacgttaccctcttttgtttagagg 48607762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 40015856 - 40015808
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||| ||||| |||||| ||| ||||||||||||||||||| ||||||    
T  40015856 ggtgaagcctaggttaccttcttttgtttagagggtaatttaccctctc 40015808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 41289740 - 41289701
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  41289740 tggtgaggcctacgttatcctctcttgtttag-gggtaatt 41289701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 37785253 - 37785311
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctcttgtttagag 261  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37785253 ggtgaggactacgttaccctctcttgtttagagggtaatttaccctctcttgtttagag 37785311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 44843409 - 44843363
Alignment:
Q  205 tgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  44843409 tgaggcctacgttaccctctcttgtttagagggtaatttaccctctc 44843363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 4233262 - 4233213
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  4233262 tggtgaggcctaagttaccctctcttgtttagagggtaatttaccctctc 4233213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 37220319 - 37220278
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaattta 244  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  37220319 ggtgaggcctacgttaccctctcttgtttagagggtaattta 37220278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 50548708 - 50548659
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  50548708 tggtgaggcctacgttaccctctcttgtttagatggtaatttatcatctc 50548659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 6177424 - 6177376
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  6177424 ggtgaggcctacgttacgctctcttgtttagagggtaatttaccctctc 6177376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 13213286 - 13213334
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  13213286 ggtgaggcctatgttaccctctcttgtttagagggtaatttaccctctc 13213334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 22604711 - 22604759
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  22604711 ggtgaagcctacgttaccctctcttgtttagagggtaatttaccctctc 22604759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 30043704 - 30043656
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  30043704 ggtgaggcctacattaccctctcttgtttagagggtaatttaccctctc 30043656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 53845124 - 53845174
Alignment:
Q  201 atggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||||||| |||||||||||||||| |||||||||||||||| ||||||    
T  53845124 atggtgaggcttacgttaccctctcttatttagagggtaatttaccctctc 53845174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 15084784 - 15084736
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||| |||||||| ||||||||||||||||||||||||| ||||||    
T  15084784 ggtgaggactacgttatcctctcttgtttagagggtaatttaccctctc 15084736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 23019678 - 23019726
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||||||||||||| ||||||| |||||||||||||||| ||||||    
T  23019678 ggtgaggcctacgttacactctcttatttagagggtaatttaccctctc 23019726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 40905999 - 40906043
Alignment:
Q  207 aggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||    
T  40905999 aggcctacattaccctctcttgtttagagggtaatttaccctctc 40906043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 51723040 - 51722996
Alignment:
Q  198 aaaatggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    
T  51723040 aaaatggtgaggcctacgttaccctttcttgtttagagagtaatt 51722996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 244
Target Start/End: Original strand, 45169817 - 45169856
Alignment:
Q  205 tgaggcctacgttaccctctcttgtttagagggtaattta 244  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  45169817 tgaggcctacgttaccctctcttttttagagggtaattta 45169856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 8852363 - 8852322
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaattta 244  Q
    ||||||| |||||||||||||||||||||||||| |||||||    
T  8852363 ggtgaggactacgttaccctctcttgtttagaggataattta 8852322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 11121075 - 11121120
Alignment:
Q  206 gaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||| ||| |||||||||||||||||||||||||||||| ||||||    
T  11121075 gaggactaggttaccctctcttgtttagagggtaatttaccctctc 11121120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 27320852 - 27320900
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||| |||| ||||| ||||||||||||||||||||||||| ||||||    
T  27320852 ggtgaagcctgcgttatcctctcttgtttagagggtaatttaccctctc 27320900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 3892892 - 3892857
Alignment:
Q  207 aggcctacgttaccctctcttgtttagagggtaatt 242  Q
    |||| |||||||||||||||||||||||||||||||    
T  3892892 aggcttacgttaccctctcttgtttagagggtaatt 3892857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 251
Target Start/End: Complemental strand, 27239270 - 27239227
Alignment:
Q  208 ggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||| ||||||||| |||||||||||||||||||| ||||||    
T  27239270 ggcctaggttaccctcacttgtttagagggtaatttaccctctc 27239227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 37785292 - 37785327
Alignment:
Q  216 ttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||||||||||||||||||||||||| ||||||    
T  37785292 ttaccctctcttgtttagagggtaatttaccctctc 37785327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 40423500 - 40423538
Alignment:
Q  204 gtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  40423500 gtgagacctacgttaccctctcttgtttagaaggtaatt 40423538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 2217871 - 2217919
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||||||||| |||| ||||||| |||||| ||||||||| ||||||    
T  2217871 ggtgaggcctacattactctctcttatttagaaggtaatttaccctctc 2217919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 41101505 - 41101545
Alignment:
Q  204 gtgaggcctacgttaccctctcttgtttagagggtaattta 244  Q
    |||||| ||||||||||||||||| |||||||| |||||||    
T  41101505 gtgaggtctacgttaccctctcttatttagaggataattta 41101545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 42825855 - 42825903
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||| ||| |||||  ||||||||||||||||||||||| ||||||    
T  42825855 ggtgaggtctatgttactatctcttgtttagagggtaatttaccctctc 42825903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 33704394 - 33704456
Alignment:
Q  194 taataaaatggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctcttgtt 256  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||    
T  33704394 taataatatggtgaagcctacgttaccctctcttgtttagagggtaatttaccctctcatgtt 33704456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 30838922 - 30838873
Alignment:
Q  201 atggtgaggcctacgttaccctctcttgtttagagggtaatttatcctct 250  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  30838922 atggtgaggcctacgttaccctctcttatttagagggtaatttaccctct 30838873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 36307652 - 36307700
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  36307652 ggtgaggtctatgttaccctctcttgtttagagggtaatttatcctctc 36307700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 21096641 - 21096678
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaa 240  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21096641 ggtgaggcctacgttaccctctcttgtttagagggtaa 21096678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 10772541 - 10772589
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||| |||||||||| ||||||||||||||||||||||||| ||||||    
T  10772541 ggtgaagcctacgttatcctctcttgtttagagggtaatttaccctctc 10772589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 51086565 - 51086605
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  51086565 tggtgaggcctacgttaccctctcttatttagagggtaatt 51086605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 35954226 - 35954264
Alignment:
Q  204 gtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  35954226 gtgaggcctatgttaccctctcttgtttagagggtaatt 35954264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 25655664 - 25655704
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  25655664 tggtgaggtctacgttaccctttcttgtttagagggtaatt 25655704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 29522126 - 29522087
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  29522126 ggtgaggtctaggttaccctctcttgtttagagggtaatt 29522087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 31029890 - 31029940
Alignment:
Q  201 atggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||| | ||| |||| ||||||||||||||||||||||||| ||||||    
T  31029890 atggtgaagtctatgttatcctctcttgtttagagggtaatttaccctctc 31029940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 44512606 - 44512560
Alignment:
Q  198 aaaatggtgaggcctacgttaccctctcttgtttagagggtaattta 244  Q
    |||| |||||||||||| |||| |||||||||||||||| |||||||    
T  44512606 aaaagggtgaggcctacattactctctcttgtttagaggttaattta 44512560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 7152718 - 7152762
Alignment:
Q  205 tgaggcctacgttaccctctcttgtttagagggtaatttatcctct 250  Q
    |||||||||| ||||||||||||||||||| ||||||||| |||||    
T  7152718 tgaggcctacattaccctctcttgtttaga-ggtaatttaccctct 7152762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 24780868 - 24780909
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaattta 244  Q
    |||||||| ||| ||||||| |||||||||||||||||||||    
T  24780868 ggtgaggcatactttaccctatcttgtttagagggtaattta 24780909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 30303159 - 30303112
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||| |||||||||||||||||||||||| || ||| ||||||||||    
T  30303159 ggtgagacctacgttaccctctcttgtttaggggataa-ttatcctctc 30303112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 11837860 - 11837811
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11837860 tggtgaggcctacgttaccctctcttgtttagagggtaatttaccctctc 11837811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 14103784 - 14103832
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14103784 ggtgaggcctacgttaccctctcttgtttagagggtaatttaccctctc 14103832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 23580078 - 23580126
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  23580078 ggtgaggcctaccttaccctctcttgtttagagggtaatttaccctctc 23580126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 24082988 - 24083030
Alignment:
Q  200 aatggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  24082988 aatggtgaggcctacgttaccctctcttatttagagggtaatt 24083030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 17551090 - 17551041
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||| |||||||||||||||||||||||| ||||||||||| ||||||    
T  17551090 tggtgaagcctacgttaccctctcttgtttaaagggtaatttaccctctc 17551041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 4590075 - 4590035
Alignment:
Q  211 ctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  4590075 ctacgttaccctctcttatttagagggtaatttatcctctc 4590035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 27438205 - 27438253
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  27438205 ggtgaggtctatgttaccctctcttgtttagagggtaatttatcttctc 27438253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 27782258 - 27782307
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||| | ||| |||||||||||||||||||||||||||||| ||||||    
T  27782258 tggtgacgtctatgttaccctctcttgtttagagggtaatttaccctctc 27782307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 12142918 - 12142879
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  12142918 ggtgaggcctacgttaccctctcttgtttaggggataatt 12142879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 24178657 - 24178616
Alignment:
Q  201 atggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    |||||||||  ||||||||||||| |||||||||||||||||    
T  24178657 atggtgaggtgtacgttaccctcttttgtttagagggtaatt 24178616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 11154895 - 11154847
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||| |||||||||||| |||| |||| ||||||||||| ||||||    
T  11154895 ggtgagggctacgttaccctttcttatttaaagggtaatttagcctctc 11154847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 39588252 - 39588301
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39588252 tggtgaggcttacgttaccctctcttgtttagagggtaatttatcctctc 39588301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 42612465 - 42612416
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42612465 tggtgaggcctacgttaccctctcttgtttagagggtaatttaccctctc 42612416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 745809 - 745761
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  745809 ggtgaagcctacgttaccctctcttgtttagagggtaatttaccctctc 745761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 27020289 - 27020241
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  27020289 ggtgaggcctacattaccctctcttgtttagagggtaatttaccctctc 27020241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 37270239 - 37270278
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37270239 ggtgaggcctacgttaccctctcttgtttagagggtaatt 37270278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 12499211 - 12499261
Alignment:
Q  201 atggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||||||||| |||||||||| ||||||||||||||||||| ||||||    
T  12499211 atggtgaggcctatgttaccctcttttgtttagagggtaatttaccctctc 12499261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 9591605 - 9591653
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||| |||| ||||||||||||||||||||||||||||| ||||||    
T  9591605 ggtgaggtctacattaccctctcttgtttagagggtaatttaccctctc 9591653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 37940197 - 37940149
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||| ||||||||| |||||||||||||||||||||||| ||||||    
T  37940197 ggtgaggtctacgttactctctcttgtttagagggtaatttaccctctc 37940149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 34401510 - 34401549
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  34401510 ggtgaggtctacgttaccctctcttgtttagagggtaatt 34401549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 19664757 - 19664805
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||||  ||||||||||||| ||||||||||||||||||| ||||||    
T  19664757 ggtgaggattacgttaccctctattgtttagagggtaatttaccctctc 19664805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 31552362 - 31552323
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  31552362 ggtgaggcctacgttaccctctcctgtttagagagtaatt 31552323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 44
Target Start/End: Complemental strand, 16865311 - 16865281
Alignment:
Q  14 agagtcataagtgaactacaaattcaagcaa 44  Q
    |||||||||||||||||||||||||||||||    
T  16865311 agagtcataagtgaactacaaattcaagcaa 16865281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 825042 - 825001
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaattta 244  Q
    |||||||  ||| |||||||||||||||||||||||||||||    
T  825042 ggtgaggtttaccttaccctctcttgtttagagggtaattta 825001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 77813 - 77764
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  77813 tggtgaggcctacgttaccctctcttgtttagaaggtaatttatcctctc 77764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 38282477 - 38282428
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  38282477 tggtgagacttacgttaccctctcttgtttagagggtaatttatcctctc 38282428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 3907118 - 3907070
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||||||||| |||| |||||||||||||||||||||||| ||||||    
T  3907118 ggtgaggcctacattacactctcttgtttagagggtaatttaccctctc 3907070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 14006263 - 14006215
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||||||||| ||||||||||||||| ||||||||||||| ||||||    
T  14006263 ggtgaggcctacattaccctctcttgttaagagggtaatttaccctctc 14006215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 2292555 - 2292516
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  2292555 ggtgaggcctacgttatcctctcttgtttagagggtaatt 2292516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 15152371 - 15152410
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  15152371 ggtgaggcttacgttaccctctcttgtttagagggtaatt 15152410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 28392013 - 28391976
Alignment:
Q  205 tgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    |||||||||||||||||||||||||||||||| |||||    
T  28392013 tgaggcctacgttaccctctcttgtttagaggataatt 28391976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 37726131 - 37726098
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagg 236  Q
    ||||||||||||||||||||||||||||||||||    
T  37726131 ggtgaggcctacgttaccctctcttgtttagagg 37726098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 4738476 - 4738437
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    ||||| |||||||||||||| |||||||||||||||||||    
T  4738476 ggtgaagcctacgttaccctatcttgtttagagggtaatt 4738437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 15398804 - 15398847
Alignment:
Q  199 aaatggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    |||||||||||||||||||| ||| | |||||||||||||||||    
T  15398804 aaatggtgaggcctacgttatcctttattgtttagagggtaatt 15398847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 27551810 - 27551771
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  27551810 ggtgaggtctatgttaccctctcttgtttagagggtaatt 27551771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 15883636 - 15883588
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15883636 ggtgaggcctacgttactctctcttgtttagagggtaatttatcctctc 15883588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 27911880 - 27911929
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  27911880 tggtgaggactacgttaccctctcttgtttagagggtaatttaccctctc 27911929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 27958299 - 27958348
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  27958299 tggtgaggactacgttaccctctcttgtttagagggtaatttaccctctc 27958348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 18955085 - 18955141
Alignment:
Q  195 aataaaatggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  18955085 aataaaacggtgaggcctaagttacactctcttgcttagagggtaatttatcctctc 18955141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 25583825 - 25583777
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  25583825 ggtgaggcctatgttaccctctcttgtttagagggtaatttaccctctc 25583777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 17948717 - 17948669
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||||  ||| ||||||||||||||||||||||||||||||||||||    
T  17948717 ggtgaggtttacattaccctctcttgtttagagggtaatttatcctctc 17948669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 3846499 - 3846538
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  3846499 ggtgaggcctacgttacactctcttgtttagagggtaatt 3846538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 4622959 - 4622916
Alignment:
Q  207 aggcctacgttaccctctcttgtttagagggtaatttatcctct 250  Q
    |||||||| ||||||||||||||||||||||||||||| |||||    
T  4622959 aggcctacattaccctctcttgtttagagggtaatttaccctct 4622916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 6093182 - 6093221
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  6093182 ggtgagacctacgttaccctctcttgtttagagggtaatt 6093221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 244
Target Start/End: Complemental strand, 17853493 - 17853454
Alignment:
Q  205 tgaggcctacgttaccctctcttgtttagagggtaattta 244  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  17853493 tgaggtctacgttaccctctcttgtttagagggtaattta 17853454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 2082495 - 2082445
Alignment:
Q  201 atggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||||||||||||||| ||||||||| ||||| |||||||| ||||||    
T  2082495 atggtgaggcctacgttacgctctcttgtatagagagtaatttaccctctc 2082445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 23347359 - 23347310
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||||| ||  ||||||||||||||||| ||||||||||||||||||    
T  23347359 tggtgaggcatatcttaccctctcttgtttaaagggtaatttatcctctc 23347310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 44255952 - 44256001
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||||||||| ||||||||||||| |||||||| ||||||| ||||||    
T  44255952 tggtgaggcctaggttaccctctcttatttagaggataatttaccctctc 44256001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 276577 - 276625
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||| ||||| ||||||||||||||||| ||||||||||| ||||||    
T  276577 ggtgagacctacattaccctctcttgtttatagggtaatttaccctctc 276625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 639272 - 639224
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||| ||||| ||||||||||||||||| ||||||||||| ||||||    
T  639272 ggtgagacctacattaccctctcttgtttatagggtaatttaccctctc 639224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 825078 - 825030
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||| ||||| ||||||||||||||||| ||||||||||| ||||||    
T  825078 ggtgagacctacattaccctctcttgtttatagggtaatttaccctctc 825030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 225
Target Start/End: Complemental strand, 3705327 - 3705296
Alignment:
Q  194 taataaaatggtgaggcctacgttaccctctc 225  Q
    ||||||||||||||||||||||||||||||||    
T  3705327 taataaaatggtgaggcctacgttaccctctc 3705296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 38577264 - 38577225
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  38577264 ggtgaggcctacgttaccctcttttatttagagggtaatt 38577225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Complemental strand, 38099320 - 38099286
Alignment:
Q  216 ttaccctctcttgtttagagggtaatttatcctct 250  Q
    |||||||||||||||||||||||| ||||||||||    
T  38099320 ttaccctctcttgtttagagggtattttatcctct 38099286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 41041675 - 41041625
Alignment:
Q  201 atggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  41041675 atggtgaggcctacattaccctctcttgtttagagggtaatttaccctctc 41041625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 20354305 - 20354264
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaattta 244  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  20354305 ggtgaggcctacgttaccctctcttgtttagagggtaattta 20354264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 23419537 - 23419496
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaattta 244  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  23419537 ggtgaggcctacgttaccctctcttgtttagagggtaattta 23419496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 4652786 - 4652834
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  4652786 ggtgaggcctacattaccctctcttgtttagagggtaatttaccctctc 4652834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 7487061 - 7487109
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  7487061 ggtgaggcctatgttaccctctcttgtttagagggtaatttaccctctc 7487109  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 17360960 - 17361002
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaattta 244  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  17360960 tggtgaggtctacgttaccctctcttgtttagagggtaattta 17361002  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 54919226 - 54919267
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaattta 244  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  54919226 ggtgaagcctacgttaccctctcttgtttagagggtaattta 54919267  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 16664481 - 16664521
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  16664481 tggtgaggcctacgttaccctctcttgtttagaggataatt 16664521  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 17520160 - 17520113
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  17520160 ggtgaggtctacgttaccctctcttgtttagagggtaa-ttatcctctc 17520113  T

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Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 31292831 - 31292792
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  31292831 ggtgagacctacgttaccctctcttgtttagagggtaatt 31292792  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 50496360 - 50496321
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  50496360 ggtgaggcctacgttaccctctcttgtttagggggtaatt 50496321  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 34072854 - 34072892
Alignment:
Q  204 gtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  34072854 gtgaggtctacgttaccctctcttgtttagagggtaatt 34072892  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 13534795 - 13534755
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    ||||||||||||  |||||||||||||||||||||||||||    
T  13534795 tggtgaggcctatattaccctctcttgtttagagggtaatt 13534755  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 20787271 - 20787224
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||| |||||||||||||||||||||||| ||||||||| ||||||    
T  20787271 ggtgaggactacgttaccctctcttgtttaga-ggtaatttaccctctc 20787224  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 35824323 - 35824362
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatt 242  Q
    |||||||| |||||||||||||||||||||||| ||||||    
T  35824323 ggtgaggcatacgttaccctctcttgtttagagagtaatt 35824362  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 52447196 - 52447247
Alignment:
Q  200 aatggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||||||| ||| ||| |||||||| |||||||||||||||| ||||||    
T  52447196 aatggtgaggcttacattatcctctcttatttagagggtaatttaccctctc 52447247  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 244
Target Start/End: Complemental strand, 43940448 - 43940415
Alignment:
Q  211 ctacgttaccctctcttgtttagagggtaattta 244  Q
    |||| |||||||||||||||||||||||||||||    
T  43940448 ctacattaccctctcttgtttagagggtaattta 43940415  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 46717533 - 46717580
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    |||||| |||| |||||||||||||||||||| ||||||||||| ||||    
T  46717533 ggtgagacctatgttaccctctcttgtttaga-ggtaatttatcttctc 46717580  T

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Target: scaffold0115 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 20718 - 20763
Alignment:
Q  205 tgaggcctacgttaccctctcttgtttagagggtaatttatcctct 250  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||    
T  20718 tgaggcctacgttaccctatcttgtttagagggtaatttaccctct 20763  T

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Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 49157 - 49109
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaatttatcctctc 251  Q
    ||||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  49157 ggtgaggtctatgttaccctctcttgtttagagggtaatttatcttctc 49109  T

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