View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_79 (Length: 268)
Name: NF1441_low_79
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_79 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 55 - 245
Target Start/End: Original strand, 9333317 - 9333508
Alignment:
| Q |
55 |
ccaagacatatatcgtaaaaattaaaaactttgtctaaccccaaaacctt-aagcacctcacacagtagaatcttaatcatgtgttttttaagaagttaa |
153 |
Q |
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| T |
9333317 |
ccaagacataaatcgtaaaaattaaaaactctgtctaaccccaaaacctttaagcacctcacacagtagaatcttagtcatgtgttttttaagaagttaa |
9333416 |
T |
|
| Q |
154 |
agaacttggtctgatccgattaagaaaaggacttggtgtggtggtggaaggaagagacgaaggagagagaagaacatggaactgcatctacc |
245 |
Q |
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| T |
9333417 |
agaacttggtctgatccgtttaagaaaaggacttggtgtggcggtggaaggaagagacgaagcagagagaagaacatggaactgcatctacc |
9333508 |
T |
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Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 55 - 245
Target Start/End: Original strand, 30562155 - 30562346
Alignment:
| Q |
55 |
ccaagacatatatcgtaaaaattaaaaactttgtctaaccccaaaacctt-aagcacctcacacagtagaatcttaatcatgtgttttttaagaagttaa |
153 |
Q |
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| T |
30562155 |
ccaagacataaatcgtaaaaattaaaaactctgtctaaccccaaaacctttaagcacctcacacagtagaatcttagtcatgtgttttttaagaagttaa |
30562254 |
T |
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| Q |
154 |
agaacttggtctgatccgattaagaaaaggacttggtgtggtggtggaaggaagagacgaaggagagagaagaacatggaactgcatctacc |
245 |
Q |
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| T |
30562255 |
agaacttggtctgatccgtttaagaaaaggacttggtgtggcggtggaaggaagagacgaagcagagagaagaacatggaactgcatctacc |
30562346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 55 - 245
Target Start/End: Original strand, 54901948 - 54902139
Alignment:
| Q |
55 |
ccaagacatatatcgtaaaaattaaaaactttgtctaaccccaaaacctt-aagcacctcacacagtagaatcttaatcatgtgttttttaagaagttaa |
153 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
54901948 |
ccaagacataaatcgtaaaaattaaaaactctgtctaaccccaaaacctttaagcacctcacacagtagaatcttagtcatgtgttttttaagaagttaa |
54902047 |
T |
|
| Q |
154 |
agaacttggtctgatccgattaagaaaaggacttggtgtggtggtggaaggaagagacgaaggagagagaagaacatggaactgcatctacc |
245 |
Q |
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| T |
54902048 |
agaacttggtctgatccgtttaagaaaaggacttggtgtggcggtggaaggaagagacgaagcagagagaagaacatggaactgcatctacc |
54902139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 88 - 244
Target Start/End: Original strand, 540265 - 540421
Alignment:
| Q |
88 |
tctaaccccaaaaccttaagcacctcacacagtagaatcttaatcatgtgttttttaagaagttaaagaacttggtctgatccgattaagaaaaggactt |
187 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
540265 |
tctaaccccaaaaccttaagcacctcacacactagaatcttagtcatgtgttttttaagaagttaaagaacttgatctgatccgtttaagaaaaggactt |
540364 |
T |
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| Q |
188 |
ggtgtggtggtggaaggaagagacgaaggagagagaagaacatggaactgcatctac |
244 |
Q |
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| T |
540365 |
ggtgtggtggtggaaggaagagacgaaggagagagaagaacatggaactgcatctac |
540421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 28823937 - 28823978
Alignment:
| Q |
204 |
gaagagacgaaggagagagaagaacatggaactgcatctacc |
245 |
Q |
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| T |
28823937 |
gaagagacgaagcagagagaagaacatggaactgcatctacc |
28823978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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