View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_8 (Length: 515)
Name: NF1441_low_8
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 501
Target Start/End: Complemental strand, 24361396 - 24360896
Alignment:
| Q |
1 |
aatctaaaacaattaatgttaggtgtgtagataggaaaattacacatgaatgagatatacaaaactacgaaccaggattctttaatgttgttttatagtg |
100 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24361396 |
aatctaaaacaattaatgttgtgtgtgtagatatgaaaattacacatgaatgagatatacaaaactacgaaccagaattctttaatgttgttttatagtg |
24361297 |
T |
|
| Q |
101 |
caacagtcataaagaccgataaaattaaagagagaaactttttctctctttaaaattaacagtttttataactattgcaccataaacaattgtaagagat |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24361296 |
caacagttataaagaccgataaaattaaagagagaaactttttctctctctaaaattaacagtttttataactattgcaccataaacaattgtaagaggt |
24361197 |
T |
|
| Q |
201 |
cttatttgacggatcctcaccaaggaccatataatagtacaacatgggatcccctgcggtcaatgttatacactgaccgcagaggtcaccattttcaact |
300 |
Q |
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|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
24361196 |
cttatttgacggatcctcaccaaaaaccatataatagtacaacatgggatcccctgcggtcactgttatacactgaccgcagaggtcactattttcaact |
24361097 |
T |
|
| Q |
301 |
tattgttgatcacctaaagcagacaaccctttccatttggcctgaccttcatataccctaggatgtaggaacggataaaacttaaaaaccaatacatctg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24361096 |
tattgttgatcacctaaagcagacaaccctttccatttggcctgaccttcatataccctaggatgtaggaacggataaaacttaaaaaccaatacatctg |
24360997 |
T |
|
| Q |
401 |
tacaattagtagtgaaccctttatatctttgtggttatagacttatagttaagtaacagatatatgttcaaactgactaatagtaccaacgataacatta |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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|
| T |
24360996 |
tacaattagtagtgaaccctttatatctttgtggttatagacttatagttaagtaacagatatatgttcaaattgactaatagtaccaaggataacatta |
24360897 |
T |
|
| Q |
501 |
t |
501 |
Q |
| |
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| |
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|
| T |
24360896 |
t |
24360896 |
T |
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