View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_81 (Length: 266)
Name: NF1441_low_81
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_81 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 53625984 - 53626224
Alignment:
| Q |
19 |
aattgttccaatgagaacttcactttcgaggtaatatattgtttgaaatttaatttatactttggtgttttaattttataactcgttgacataacctcat |
118 |
Q |
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| T |
53625984 |
aattgttccaatgagaacttcactttcgaggtaatatattgtttgaaatttaatttatactttggtgttttaattttataactcgttgacataacctcat |
53626083 |
T |
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| Q |
119 |
atatttgagctagattaaccacttaaagttgtggcaaaagatgttcaattttagttgttcaaatataagacaattgtacgcggcaggtcttcatgtctag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
53626084 |
atatttgagctagattaaccacttaaagttgtggcaaaagatgttcaattttagttgttcaaatataaaacaattgtacgcggcaggtcttcatgtctag |
53626183 |
T |
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| Q |
219 |
ttatgtaaatgaattacattacattgcaccagttcatctca |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
53626184 |
ttatgtaaatgaattacattacattgcaccagttcatctca |
53626224 |
T |
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