View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_83 (Length: 264)
Name: NF1441_low_83
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_83 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 25816816 - 25816569
Alignment:
| Q |
1 |
tccattccctacattaatatgtcatggagacacatcatcttatggtactaaacaaaacataagggttatataacacactaaaacaaaaagacaagacaaa |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
25816816 |
tccattccctacattaatatgtcaaggagacacatcatcttgtggtactaaacaaaacataagggttctataacacgctaaaacaaaaagacaagacaaa |
25816717 |
T |
|
| Q |
101 |
agatagattctgttaagttacatgttgttcaagctcgagactttttcaccttattccctttactccctctactactgttatgtgcagcatacaatgtatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
25816716 |
agatagattctgttaagttacatgttgttcaagctcgagactttttcaccttattccctttactccctctactactgttatgtgtagcatgcaatgtatt |
25816617 |
T |
|
| Q |
201 |
ctgtaaaccacttcctttaccatgttccatatataaattgagccaatt |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25816616 |
ctgtaaaccacttcctttaccatgttccatatataaattgagccaatt |
25816569 |
T |
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