View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_84 (Length: 263)
Name: NF1441_low_84
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_84 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 43920425 - 43920658
Alignment:
| Q |
12 |
agagatgtcaaccacaacccaaaggattcaattaggatggataaaatagaggaacgtctcgaatatgattcatgataaaaatggaaaacacaagacaaaa |
111 |
Q |
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| T |
43920425 |
agagatgtcaaccacaacccaaaggattcaattaggatggataaaatagaggaacgtctcgaatatgattcatgataaaaatggaaaacacaagacaaaa |
43920524 |
T |
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| Q |
112 |
ttaggatggatacatcttatttgaacgatattattataaatagaaatataagagtttttcttaagacaatataaaaaacaagtgggtttgtgttgtgaac |
211 |
Q |
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| T |
43920525 |
ttaggatggatacatcttatttgaacgatattattataaatagaaatataagagtttttcttaagacaatataaaaaacaagtgggtttgtgttgtgaac |
43920624 |
T |
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| Q |
212 |
ccagaaattcaattgaagagtactatgttactga |
245 |
Q |
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| T |
43920625 |
ccagaaattcaattgaagagtactatgttactga |
43920658 |
T |
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