View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441_low_88 (Length: 259)

Name: NF1441_low_88
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441_low_88
NF1441_low_88
[»] chr5 (2 HSPs)
chr5 (18-259)||(9605984-9606225)
chr5 (22-135)||(9590460-9590575)
[»] chr8 (14 HSPs)
chr8 (18-250)||(6449791-6450023)
chr8 (18-259)||(6456258-6456499)
chr8 (138-251)||(6320552-6320665)
chr8 (138-251)||(6331014-6331127)
chr8 (138-220)||(6273673-6273755)
chr8 (129-243)||(6262455-6262569)
chr8 (138-223)||(6390101-6390186)
chr8 (138-251)||(7458203-7458316)
chr8 (138-251)||(7470605-7470718)
chr8 (138-251)||(6287924-6288037)
chr8 (138-238)||(6423379-6423479)
chr8 (138-251)||(6351462-6351575)
chr8 (138-175)||(6369119-6369156)
chr8 (138-210)||(6409353-6409425)
[»] chr2 (2 HSPs)
chr2 (18-241)||(42689355-42689578)
chr2 (117-196)||(42692369-42692448)
[»] chr3 (1 HSPs)
chr3 (125-193)||(36745679-36745747)
[»] chr1 (1 HSPs)
chr1 (129-199)||(36926123-36926193)


Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 9606225 - 9605984
Alignment:
Q  18 catggcttgtctttcaagtcaccatgacctttttctacaacttccttccaccaagtttgtaattcagtgtctttttgtactgcctcatcagttggataat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9606225 catggcttgtctttcaagtcaccatgacctttttctacaacttccttccaccaagtttgtaattcagtgtctttttgtactgcctcatcatttggataat 9606126  T
Q  118 acaaggaaacatagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccgtg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9606125 acaaggaaacatagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatg 9606026  T
Q  218 tggagacgatggatcctcaacggctaatcctctatatcaagc 259  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  9606025 tggagacgatggatcctcaacggctaatcctctatatcaagc 9605984  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 9590575 - 9590460
Alignment:
Q  22 gcttgtctttcaagtcaccatgacctttttctacaacttccttccaccaagtttgtaattcagtgtctttt--tgtactgcctcatcagttggataatac 119  Q
    |||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||  | |  ||||||||||||||| ||||||    
T  9590575 gcttgtcttttaagtcaccatgacccttttctacaacttcctttcaccaagtttgtacttcagtgtcttttattcttttgcctcatcagttgggtaatac 9590476  T
Q  120 aaggaaacatagtctt 135  Q
    ||||| |||| |||||    
T  9590475 aaggagacatggtctt 9590460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 6449791 - 6450023
Alignment:
Q  18 catggcttgtctttcaagtcaccatgacctttttctacaacttccttccaccaagtttgtaattcagtgtctttttgtactgcctcatcagttggataat 117  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||  |||| | ||||||||||||||| || |||||||| |||||||| |    
T  6449791 catggcttgtctttcaagtcaccgtgacccttttctacagcttccttccaccatttttgaatttcagtgtctttttgcaccgcctcatctgttggatagt 6449890  T
Q  118 acaaggaaacatagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccgtg 217  Q
    | ||||| ||||||||||||||||||| |||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||| |||||||||||    
T  6449891 ataaggagacatagtcttggacccatgccttaatagcatcccatatttctagtccatcaacagcataagggtagtcctctatcacaagtcgaaggccgtg 6449990  T
Q  218 tggagacgatggatcctcaacggctaatcctct 250  Q
     || || || ||||||||||| |||||||||||    
T  6449991 aggggaagagggatcctcaacagctaatcctct 6450023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 6456258 - 6456499
Alignment:
Q  18 catggcttgtctttcaagtcaccatgacctttttctacaacttccttccaccaagtttgtaattcagtgtctttttgtactgcctcatcagttggataat 117  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||| ||| | ||||| ||||||||||    
T  6456258 catggcttgtctttcaagtcaccatgacccttttctacagcttccttccaccaagtttgtagttcagtgtccttttgcactacttcatctgttggataat 6456357  T
Q  118 acaaggaaacatagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccgtg 217  Q
    | ||||| ||||||||||| ||||||| |||||||||||||||||| || ||||||||||| |||||||||||||| || | | |||||||||| || ||    
T  6456358 ataaggagacatagtcttgaacccatgccttaatagcatcccatatttctagtccatcaacagcataagggtagtcttctaacgcaagacgaagtccatg 6456457  T
Q  218 tggagacgatggatcctcaacggctaatcctctatatcaagc 259  Q
     || || || || |||||||| |||| ||||||  |||||||    
T  6456458 gggggaagacgggtcctcaacagctagtcctctgaatcaagc 6456499  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 6320552 - 6320665
Alignment:
Q  138 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccgtgtggagacgatggatcctcaa 237  Q
    ||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||| |||| ||| ||||  || ||||| || | |||||||||||    
T  6320552 acccatgacttgatagcatcccatatctctagtccatcagcagcataagggtagtcctctatcagaaggcgaattccatgtggggaagttggatcctcaa 6320651  T
Q  238 cggctaatcctcta 251  Q
    | || | |||||||    
T  6320652 cagccactcctcta 6320665  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 6331014 - 6331127
Alignment:
Q  138 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccgtgtggagacgatggatcctcaa 237  Q
    ||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||| |||| ||| ||||  || ||||| || | |||||||||||    
T  6331014 acccatgacttgatagcatcccatatctctagtccatcagcagcataagggtagtcctctatcagaaggcgaattccatgtggggaagttggatcctcaa 6331113  T
Q  238 cggctaatcctcta 251  Q
    | || | |||||||    
T  6331114 cagccactcctcta 6331127  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 6273673 - 6273755
Alignment:
Q  138 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccgtgtgg 220  Q
    ||||||||||||||| || |||||||||| | ||||||| | ||||||||||||||||| |||| ||| ||||||||||||||    
T  6273673 acccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctctatcagaaggcgaaggccgtgtgg 6273755  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 243
Target Start/End: Original strand, 6262455 - 6262569
Alignment:
Q  129 tagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccgtgtggagacgatg 228  Q
    |||||||| ||||||| ||||||||||||||| || || ||||||||||| ||||||||||| ||||| || |  |||||||| ||||| || || ||||    
T  6262455 tagtcttgtacccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctctatgagtagacgaagaccgtgaggggaagatg 6262554  T
Q  229 gatcctcaacggcta 243  Q
     |||| |||| ||||    
T  6262555 aatccgcaactgcta 6262569  T

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Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 6390101 - 6390186
Alignment:
Q  138 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccgtgtggaga 223  Q
    |||||||||||||||||| |||||||||| ||||||||||| ||||| || || ||||| |||| |||||| || || ||||||||    
T  6390101 acccatgacttaatagcagcccatatctctagtccatcaacagcatatggataatcctctatcagaagacgcagaccatgtggaga 6390186  T

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Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 7458203 - 7458316
Alignment:
Q  138 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccgtgtggagacgatggatcctcaa 237  Q
    |||||||||||||||||| |||||||||| |||||||||   |||||||| |||||||| |||| ||| ||||  || |||||||| | |||||||| ||    
T  7458203 acccatgacttaatagcagcccatatctctagtccatcagaagcataaggatagtcctctatcagaagtcgaacaccatgtggagaagctggatcctgaa 7458302  T
Q  238 cggctaatcctcta 251  Q
    | || | |||||||    
T  7458303 ctgccactcctcta 7458316  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 7470605 - 7470718
Alignment:
Q  138 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccgtgtggagacgatggatcctcaa 237  Q
    |||||||||||||||||| |||||||||| |||||||||    ||||||| |||||||| |||| ||| ||||  || |||||||| | |||||||| ||    
T  7470605 acccatgacttaatagcagcccatatctctagtccatcagaaacataaggatagtcctctatcagaagtcgaacaccatgtggagaagctggatcctgaa 7470704  T
Q  238 cggctaatcctcta 251  Q
    | || | |||||||    
T  7470705 ctgccactcctcta 7470718  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 6287924 - 6288037
Alignment:
Q  138 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccgtgtggagacgatggatcctcaa 237  Q
    |||||||||||||| ||   ||||||||| | ||||||| | ||||||||||| || |  |||| ||| |||||||||||||| || | |||||||||||    
T  6287924 acccatgacttaattgctgtccatatctctaatccatcagcagcataagggtaatcttttatcagaaggcgaaggccgtgtggggaagttggatcctcaa 6288023  T
Q  238 cggctaatcctcta 251  Q
    | || | |||||||    
T  6288024 cagccactcctcta 6288037  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 6423379 - 6423479
Alignment:
Q  138 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccgtgtggagacgatggatcctcaa 237  Q
    ||||||| ||| |||||| |||||||||| ||||||||    |||||||| || ||||| |||| ||| |||| ||||||||| || | |||||||||||    
T  6423379 acccatgtcttgatagcagcccatatctctagtccatccgaagcataaggataatcctcaatcaaaaggcgaatgccgtgtggtgaagctggatcctcaa 6423478  T
Q  238 c 238  Q
    |    
T  6423479 c 6423479  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 6351462 - 6351575
Alignment:
Q  138 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccgtgtggagacgatggatcctcaa 237  Q
    |||||||||||||| ||| ||||||| || |||||||||   |||||||| || ||||| |||| ||| || || |||   ||||| | |||||||||||    
T  6351462 acccatgacttaatggcagcccatatttctagtccatcagaagcataaggataatcctctatcagaaggcggagaccggtaggagaggctggatcctcaa 6351561  T
Q  238 cggctaatcctcta 251  Q
    | |||| |||||||    
T  6351562 cagctactcctcta 6351575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 6369119 - 6369156
Alignment:
Q  138 acccatgacttaatagcatcccatatctcgagtccatc 175  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  6369119 acccatgacttaatagcagcccatatctctagtccatc 6369156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 6409353 - 6409425
Alignment:
Q  138 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaa 210  Q
    |||||||||||||||||| |||||||||| | |||||||   |||||||| || ||||| |||| ||| ||||    
T  6409353 acccatgacttaatagcagcccatatctctaatccatcagtagcataaggataatcctctatcaaaaggcgaa 6409425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 42689578 - 42689355
Alignment:
Q  18 catggcttgtctttcaagtcaccatgacctttttctacaacttccttccaccaagtttgtaattcagtgtctttttgtactgcctcatcagttggataat 117  Q
    ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||  ||| |  ||||  || ||||  |   | |  || |||| |||||    
T  42689578 catggcttgtctttcaaatcaccatgacctttctctacaacttctttccaccaatgttgaagctcagaatcatttttgatatcattgtctgttgcataat 42689479  T
Q  118 acaaggaaacatagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccgtg 217  Q
    |||  || ||||| ||||| |||||||  |||||||    ||||||||| | ||||||||| ||||||||||||||||| |||| ||||||||| ||||     
T  42689478 acactgagacataatcttgtacccatgttttaatagttgtccatatctctaatccatcaacagcataagggtagtcctctatcagaagacgaagtccgta 42689379  T
Q  218 tggagacgatggatcctcaacggc 241  Q
    ||| ||||||||||||||||||||    
T  42689378 tggggacgatggatcctcaacggc 42689355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 42692369 - 42692448
Alignment:
Q  117 tacaaggaaacatagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctc 196  Q
    |||||||| ||||||||||| ||||||| ||| || ||| |||||||||| | |||||||   ||||||||||| |||||    
T  42692369 tacaaggagacatagtcttgaacccatgtctttattgcagcccatatctctaatccatcatgagcataagggtaatcctc 42692448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 36745747 - 36745679
Alignment:
Q  125 aacatagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtc 193  Q
    |||||||||||  ||||||| ||||||||||||||||||||| | ||||||||| ||| ||||||||||    
T  36745747 aacatagtctttcacccatgccttaatagcatcccatatctctaatccatcaacagcaaaagggtagtc 36745679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 36926193 - 36926123
Alignment:
Q  129 tagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgat 199  Q
    |||||||  ||||||| ||| || |||  ||| ||||| ||||||||||||||||||||||| ||||||||    
T  36926193 tagtctttaacccatgtcttgatggcaaaccaaatctccagtccatcaactgcataagggtaatcctcgat 36926123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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