View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_9 (Length: 506)
Name: NF1441_low_9
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 255 - 491
Target Start/End: Original strand, 11109963 - 11110201
Alignment:
| Q |
255 |
ctctttcttttacttataataccttgtctctaatttatgggacataatatgacaattttttatgatcatat--gtatatatgtagtttttgagatagagc |
352 |
Q |
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| T |
11109963 |
ctctttcttttacttataataccttctctctaatttatgggacataatatgacaattttttattatcatatatgtatatatgtagtttttgagatagagc |
11110062 |
T |
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| Q |
353 |
actaaataacttgatattatttatgattcaaacagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttcc |
452 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11110063 |
actaaataacttgatattatttatgattgaaacagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttcc |
11110162 |
T |
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| Q |
453 |
aaatatcaactccttaagaggattggatgttatcaatca |
491 |
Q |
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| T |
11110163 |
aaatatcaactccttaagaggattggatgttatcaatca |
11110201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 11109719 - 11109843
Alignment:
| Q |
13 |
aatatatgtagggttggtctaaaggtaagactactaaaacctttgttctaggccctt----gttaatttaataattgtcatatttgccaaagattaatag |
108 |
Q |
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| T |
11109719 |
aatatatgtagggttggtctaaaggtaagactactaaaacctttgt-ctaggccctttcttgttaatttaataattgtcatatttgccaaagattaatag |
11109817 |
T |
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| Q |
109 |
tgtcattgctagttaattttcaacat |
134 |
Q |
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| T |
11109818 |
tgtcattactagttaattttcaacat |
11109843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 371 - 491
Target Start/End: Original strand, 11118085 - 11118205
Alignment:
| Q |
371 |
atttatgattcaaacagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaag |
470 |
Q |
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| T |
11118085 |
atttatgattgaatcagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactccttaag |
11118184 |
T |
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| Q |
471 |
aggattggatgttatcaatca |
491 |
Q |
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| T |
11118185 |
aagattggatgttatcaatca |
11118205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 383 - 483
Target Start/End: Original strand, 11145244 - 11145344
Alignment:
| Q |
383 |
aacagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgt |
482 |
Q |
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| T |
11145244 |
aacagggttgtgatgcatcagttttgttgaataacactgctactattgtcagtgaacaagatgcttttccaaacagaaactcattgagaggtttggatgt |
11145343 |
T |
|
| Q |
483 |
t |
483 |
Q |
| |
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| |
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| T |
11145344 |
t |
11145344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 374 - 483
Target Start/End: Original strand, 11136936 - 11137045
Alignment:
| Q |
374 |
tatgattcaaacagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagagg |
473 |
Q |
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||||||| ||||||||||||||||||||||||| ||||| || || | || ||||||||||||||||| ||||| |||||||||||||| || |||| |
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| T |
11136936 |
tatgattgtaacagggttgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaagaagctttcccaaatatcaactctctacgagg |
11137035 |
T |
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| Q |
474 |
attggatgtt |
483 |
Q |
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| T |
11137036 |
tttggatgtt |
11137045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 391 - 483
Target Start/End: Original strand, 11200121 - 11200213
Alignment:
| Q |
391 |
tgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgtt |
483 |
Q |
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||||||||||| |||||| |||| ||||| ||||| || || || |||||| | ||||||||||||||||||||| ||||||| ||||||||| |
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| T |
11200121 |
tgtgatgcatcggttttgctgaacaacacagcaacaatcgtaagcgaacaacaagcttttccaaatatcaactccataagaggtttggatgtt |
11200213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 383 - 483
Target Start/End: Original strand, 11149178 - 11149278
Alignment:
| Q |
383 |
aacagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgt |
482 |
Q |
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| T |
11149178 |
aacagggttgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttagatgt |
11149277 |
T |
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| Q |
483 |
t |
483 |
Q |
| |
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| T |
11149278 |
t |
11149278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 455
Target Start/End: Original strand, 11104099 - 11104170
Alignment:
| Q |
384 |
acagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaa |
455 |
Q |
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|||||| ||||||| ||||||||||||||| ||||| | || |||||||||||||||||||| |||||||| |
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| T |
11104099 |
acagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaa |
11104170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 483
Target Start/End: Original strand, 11155562 - 11155661
Alignment:
| Q |
384 |
acagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgtt |
483 |
Q |
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| T |
11155562 |
acagggatgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgtt |
11155661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 473
Target Start/End: Complemental strand, 10794209 - 10794104
Alignment:
| Q |
368 |
attatttatgattcaaacagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactcctt |
467 |
Q |
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|||||| || ||| ||||||||||| |||||||| ||||| |||| ||||| || ||||| ||||| |||| | | ||| | ||||||||||||||| | |
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| T |
10794209 |
attattaattattgaaacagggttgcgatgcatccattttgctgaacaacactgctactatcgtgagcgaactacaagctctcccaaatatcaactccat |
10794110 |
T |
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| Q |
468 |
aagagg |
473 |
Q |
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|||||| |
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| T |
10794109 |
aagagg |
10794104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 483
Target Start/End: Original strand, 11095640 - 11095739
Alignment:
| Q |
384 |
acagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgtt |
483 |
Q |
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| T |
11095640 |
acagggttgtgatggatcagttttgttgaacaacactaataccatagtaagtgagcaagatgcacttccaaacataaactcattaaggggtttggatgtt |
11095739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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