View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_90 (Length: 255)
Name: NF1441_low_90
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_90 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 8846047 - 8846284
Alignment:
| Q |
1 |
attatggaaggaggcataccattcaatagggtttatggcatgcatgcatttgaatatccaattgtggatccaaggtttaatgatgttttcaacaatgcta |
100 |
Q |
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| T |
8846047 |
attatggaaggaggcataccattcaatagggtttatggcatgcatgcatttgaatatccaattgtggatccaaggtttaatgatgttttcaacaatgcta |
8846146 |
T |
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| Q |
101 |
tggccaattgtacaactatagtcatgaagagggttcttgaaatctatgaaggttttgaacacatcaataaacttgttgatgttggtggtggtcttgggat |
200 |
Q |
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| T |
8846147 |
tggccaattgtacaactatagtcatgaagagggttcttgaaatctatgaaggttttgaacacatcaataaacttgttgatgttggtggtggtcttgggat |
8846246 |
T |
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| Q |
201 |
caatcttaagctaattacttctaaatatcctcatatac |
238 |
Q |
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| T |
8846247 |
caatcttaagctaattacttctaaatatcctcatatac |
8846284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 197
Target Start/End: Complemental strand, 49098764 - 49098571
Alignment:
| Q |
4 |
atggaaggaggcataccattcaatagggtttatggcatgcatgcatttgaatatccaattgtggatccaaggtttaatgatgttttcaacaatgctatgg |
103 |
Q |
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| T |
49098764 |
atggaaggaggaatagcgttcaatagggtttatggaatgcatgcgtttgagtatccacgtgtggacccaaggttcaatgatgttttcaacaaagctatgg |
49098665 |
T |
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| Q |
104 |
ccaattgtacaactatagtcatgaagagggttcttgaaatctatgaaggttttgaacacatcaataaacttgttgatgttggtggtggtcttgg |
197 |
Q |
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| T |
49098664 |
ttaattcaacaactataaacatgaagaggattattgattgttatcaaggttttgaccacataactaagctagttgatgttggtggtggtcttgg |
49098571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 49102295 - 49102241
Alignment:
| Q |
34 |
tatggcatgcatgcatttgaatatccaattgtggatccaaggtttaatgatgttt |
88 |
Q |
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| T |
49102295 |
tatggaatgcatgcctttgagtgtccacttgtggatccaaggttcaatgatgttt |
49102241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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