View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441_low_92 (Length: 254)
Name: NF1441_low_92
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441_low_92 |
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| [»] scaffold0006 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 21 - 251
Target Start/End: Original strand, 13395793 - 13396023
Alignment:
| Q |
21 |
agtggacccaaagaacctccatctttatccaatgcaaagtattgaccaattgatgagagagcataaactctttctctcttaccattttcattggtacgaa |
120 |
Q |
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| T |
13395793 |
agtggacctaaagaacctccatctttatccaatgcaaagtattgaccaattgatgagagagcataaactctttctctcttaccattttcattggtacgaa |
13395892 |
T |
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| Q |
121 |
tggaacaagtaagaagagagtaactagccaatacagtcaacatacgttcaagcctctcagccaattcatgatgttgatttggaagctgagaagcaatttc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13395893 |
tggaacaagtaagaagagagtaactagccaatacagtcaacatacgttcaagcctctcagccaattcatgatgttgatttggaagctgagaagcaatttc |
13395992 |
T |
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| Q |
221 |
agaagcagaaaaactagaatgttcacttgaa |
251 |
Q |
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| T |
13395993 |
agaagcagaaaaactagaatgttcatttgaa |
13396023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 13407399 - 13407635
Alignment:
| Q |
18 |
gagagtggacccaaagaacctccatctttatccaatgcaaagtattgaccaattgatgagagagcataaactctttctctcttaccattttcattggtac |
117 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| ||| |
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| T |
13407399 |
gagagtggacgtaaagagcctccatctttatccaatgcaaagtattgaccaattgatgagagagcataaactctttctttgttaccatcttcattgatac |
13407498 |
T |
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| Q |
118 |
gaatggaacaagtaagaagagagtaactagccaatacagtcaacatacgttcaagcctctcagccaattcatgatgttgatttggaagctgagaagcaat |
217 |
Q |
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| T |
13407499 |
gaatggaacaagtgagaagagagtaactagccaacacagtcaacatacgttcaagcctctcagccaattcagggtgttgatttggaagctcagaagcaat |
13407598 |
T |
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| Q |
218 |
ttcagaagcagaaaaactagaatgttcacttgaattt |
254 |
Q |
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| T |
13407599 |
ttcagaagcagaaaaactagaatgttcacttgaattt |
13407635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 13384836 - 13385072
Alignment:
| Q |
18 |
gagagtggacccaaagaacctccatctttatccaatgcaaagtattgaccaattgatgagagagcataaactctttctctcttaccattttcattggtac |
117 |
Q |
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||||||||| ||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13384836 |
gagagtggagccaaagagcctccatcactatcacatgcaaagtattgaccaattgatgagagagcataaactctttctctcttaccatcttcattggtac |
13384935 |
T |
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| Q |
118 |
gaatggaacaagtaagaagagagtaactagccaatacagtcaacatacgttcaagcctctcagccaattcatgatgttgatttggaagctgagaagcaat |
217 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| |
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| T |
13384936 |
gaatggaacaagtgagaagagagtaactagccaacacagtcaacatacgttcaagcctctcagccaattcagggtgttgatttggaagctcagaagcaat |
13385035 |
T |
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| Q |
218 |
ttcagaagcagaaaaactagaatgttcacttgaattt |
254 |
Q |
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|||| ||||||||||||||||||||||| |||||||| |
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| T |
13385036 |
ttcataagcagaaaaactagaatgttcatttgaattt |
13385072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 19174343 - 19174110
Alignment:
| Q |
18 |
gagagtggacccaaagaacctccatctttatccaatgcaaagtattgaccaattgatgagagagcataaactctttctctcttaccattttcattggtac |
117 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| ||| |
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| T |
19174343 |
gagagtggacctaaagagcctccatctttatccaatgcaaagtattgaccaattgatgagagagcataaactctttctttgttaccatcttcattgctac |
19174244 |
T |
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| Q |
118 |
gaatggaacaagtaagaagagagtaactagccaatacagtcaacatacgttcaagcctctcagccaattcatgatgttgatttggaagctgagaagcaat |
217 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| |
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| T |
19174243 |
gaatggaacaagtgagaagagagtaactagccaacacagtcaacatacgttcaagcctctcagccaattcagggtgttgatttggaagctcagaagcaat |
19174144 |
T |
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| Q |
218 |
ttcagaagcagaaaaactagaatgttcacttgaa |
251 |
Q |
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||||||||||||||| |||||| |||||||||| |
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| T |
19174143 |
ttcagaagcagaaaaggtagaatattcacttgaa |
19174110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 70119 - 70170
Alignment:
| Q |
200 |
tggaagctgagaagcaatttcagaagcagaaaaactagaatgttcacttgaa |
251 |
Q |
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| T |
70119 |
tggaagctcacaagcaatttcagaagcagaaaagctagaatattcacttgaa |
70170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 77
Target Start/End: Original strand, 70086 - 70117
Alignment:
| Q |
46 |
tatccaatgcaaagtattgaccaattgatgag |
77 |
Q |
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| T |
70086 |
tatccaatgcaaagtattgaccaattgatgag |
70117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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