View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441_low_93 (Length: 253)

Name: NF1441_low_93
Description: NF1441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441_low_93
NF1441_low_93
[»] chr3 (3 HSPs)
chr3 (10-240)||(48366017-48366247)
chr3 (10-231)||(48396304-48396525)
chr3 (10-231)||(48385556-48385777)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 48366247 - 48366017
Alignment:
Q  10 ctgagatgaacaccttgtggaagaaggctgtatctgatattgagctcttcaaatattcttttaacttccatcactagttcacttttcctattcaccttct 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48366247 ctgagatgaacaccttgtggaagaaggctgtatctgatattgagctcttcaaatattcttttaacttccatcactagttcacttttcctattcaccttct 48366148  T
Q  110 ctccaaactcttgaaagttcattgtgtgagtaacataaagacccatcttaatcttatttacattttcaatctctattactaccaagctgaaattaggatg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48366147 ctccaaactcttgaaagttcattgtgtgagtaacataaagacccatcttaatcttatttacattttcaatctctattactaccaagctgaaattaggatg 48366048  T
Q  210 ccagtattgtggattcctctccgcgtaccta 240  Q
    |||||||||||||||||||||||||||||||    
T  48366047 ccagtattgtggattcctctccgcgtaccta 48366017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 10 - 231
Target Start/End: Original strand, 48396304 - 48396525
Alignment:
Q  10 ctgagatgaacaccttgtggaagaaggctgtatctgatattgagctcttcaaatattcttttaacttccatcactagttcacttttcctattcaccttct 109  Q
    ||||||||||||||||| |||| ||||  |||||||||||||||||||||||||||| | || ||||||||||||| ||||||| |||  ||   |||||    
T  48396304 ctgagatgaacaccttgcggaataaggtagtatctgatattgagctcttcaaatattttctttacttccatcactaattcacttctccgcttagtcttct 48396403  T
Q  110 ctccaaactcttgaaagttcattgtgtgagtaacataaagacccatcttaatcttatttacattttcaatctctattactaccaagctgaaattaggatg 209  Q
    | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||| |||| |||||| |||||||    
T  48396404 ccccaaattcttgaaagttcattgtgtgagtaacataaagacccatcttaatcttatttacattttcaatctccttcactgccaaactgaaactaggatg 48396503  T
Q  210 ccagtattgtggattcctctcc 231  Q
    ||||||||||||||||||||||    
T  48396504 ccagtattgtggattcctctcc 48396525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 231
Target Start/End: Complemental strand, 48385777 - 48385556
Alignment:
Q  10 ctgagatgaacaccttgtggaagaaggctgtatctgatattgagctcttcaaatattcttttaacttccatcactagttcacttttcctattcaccttct 109  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||| | || |||||||| |||||||||||| |||  ||   |||||    
T  48385777 ctgagatgaacaccttgtggaagaaggttgtatcttatattgagatcttcaaatattttctttacttccattactagttcacttctccgcttggtcttct 48385678  T
Q  110 ctccaaactcttgaaagttcattgtgtgagtaacataaagacccatcttaatcttatttacattttcaatctctattactaccaagctgaaattaggatg 209  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||  | |||||||| |  |||||||||||    
T  48385677 ctccaaactcttgaaaattcattgtgtgagtaacaaaaagacccatcttaatattatttacattttcaatctccttcactaccaatccaaaattaggatg 48385578  T
Q  210 ccagtattgtggattcctctcc 231  Q
    |||||||||||||||| |||||    
T  48385577 ccagtattgtggattcttctcc 48385556  T

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