View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1442-Insertion-1 (Length: 328)
Name: NF1442-Insertion-1
Description: NF1442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1442-Insertion-1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 328
Target Start/End: Complemental strand, 6885870 - 6885556
Alignment:
| Q |
8 |
gcaatatcaccgggtatgtatattttttaaatgtattctcctaacttattatattttcttccatctcaatcactaatcagtaatcactatgttggcatca |
107 |
Q |
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| T |
6885870 |
gcaatatcaccgggtatgtatattttttaaatgtattctcctaacttattatattttcttccatct-------taatcattaatcactatgttggcatca |
6885778 |
T |
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| Q |
108 |
ataataattcgagaaaatacagtaattcaatgcgaccatatgtgttgttaatgtatcgatctatgctacattttccatgtatatgttcaactcaaacctc |
207 |
Q |
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| T |
6885777 |
ataataattcgagaaaatacagtaattcaatgcaaccatatgtgttgttgatgtatcggtctatgccacattttccatgtatatattcaactcaaacctc |
6885678 |
T |
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| Q |
208 |
acataaatttttgggctaattctatggtgcgaacgtgaaaagtcttgcacacactttttgtttttgtttgtaaagaaccgttgtcaata-tgttacacca |
306 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6885677 |
acataaatttttgggctaattctatggtgcttacgtgaaaagtattgcacacgctatttgtttttgtttgtaaagaaccgttgtcaatagtgttacacca |
6885578 |
T |
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| Q |
307 |
atggatcatgtttgactgtaat |
328 |
Q |
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|||||||||||||||||||||| |
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| T |
6885577 |
atggatcatgtttgactgtaat |
6885556 |
T |
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