View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1442-Insertion-10 (Length: 302)
Name: NF1442-Insertion-10
Description: NF1442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1442-Insertion-10 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 30 - 302
Target Start/End: Original strand, 53096712 - 53096984
Alignment:
| Q |
30 |
tccatcgaatttggatgagcagaaatgaagggggtggaggaaattaggctacataacaaggtcaaaatgaagttgagtaaaagaaatttactgcaaacaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53096712 |
tccatcgaatttggatgagcagaaatgaagggggtggaggaaattaggctacataacaaggtcaaaatgaagttgagtaaaagaaatttactgcaaacaa |
53096811 |
T |
|
| Q |
130 |
gaagcattagttgcatgcgtcgagcctggcaataatgttagaccttctgttaaaacaaccaaagatgtctaggtattaaccaaatgataaaatactttag |
229 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
53096812 |
gaagcattagttgcatacgtcgagcctggcaataatgttagaccttctgttaaaacaaccaaagatgtctaggtattaaccaaatgataaaatgctttag |
53096911 |
T |
|
| Q |
230 |
tcatcaaccaagtaagaaaaatcactgcttgtaacaaccaacgagcaaaattctgtcctcacataccgttttc |
302 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53096912 |
tcatcacccaagtaagaaaaatcactgcttgtaacaaccaacgagcaaaattctgtcctcacataccgttttc |
53096984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University