View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1442-Insertion-11 (Length: 217)

Name: NF1442-Insertion-11
Description: NF1442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1442-Insertion-11
NF1442-Insertion-11
[»] chr2 (31 HSPs)
chr2 (7-148)||(40295292-40295430)
chr2 (169-217)||(40295450-40295498)
chr2 (173-214)||(7206149-7206190)
chr2 (173-214)||(29544651-29544692)
chr2 (173-214)||(42791319-42791360)
chr2 (173-217)||(20200726-20200770)
chr2 (175-215)||(24581015-24581055)
chr2 (174-214)||(28771606-28771646)
chr2 (173-212)||(10723965-10724004)
chr2 (175-214)||(12413517-12413556)
chr2 (175-214)||(12425577-12425616)
chr2 (175-214)||(18693660-18693699)
chr2 (173-212)||(27848184-27848223)
chr2 (175-214)||(29734715-29734754)
chr2 (175-214)||(31815885-31815924)
chr2 (177-216)||(43356542-43356581)
chr2 (173-211)||(10735827-10735865)
chr2 (176-214)||(20565074-20565112)
chr2 (176-214)||(25186241-25186279)
chr2 (176-214)||(43117189-43117227)
chr2 (173-214)||(11175809-11175850)
chr2 (177-214)||(22359029-22359066)
chr2 (173-214)||(22709109-22709150)
chr2 (175-216)||(23250318-23250359)
chr2 (173-214)||(24592842-24592883)
chr2 (173-214)||(41778940-41778981)
chr2 (174-214)||(24393269-24393309)
chr2 (176-212)||(31543038-31543074)
chr2 (173-217)||(32204565-32204609)
chr2 (178-214)||(36359338-36359374)
chr2 (178-214)||(45032717-45032753)
[»] chr6 (30 HSPs)
chr6 (175-215)||(8809329-8809369)
chr6 (175-214)||(15187087-15187126)
chr6 (175-214)||(15473480-15473519)
chr6 (177-214)||(2692239-2692276)
chr6 (173-214)||(8569733-8569774)
chr6 (177-214)||(8637437-8637474)
chr6 (175-216)||(28758288-28758329)
chr6 (177-214)||(31971553-31971590)
chr6 (169-217)||(9392660-9392708)
chr6 (173-216)||(34701169-34701212)
chr6 (176-214)||(3808117-3808155)
chr6 (175-217)||(9111068-9111110)
chr6 (175-217)||(13496137-13496179)
chr6 (175-217)||(34481412-34481454)
chr6 (173-214)||(655745-655786)
chr6 (173-214)||(2655023-2655064)
chr6 (180-217)||(12215774-12215811)
chr6 (180-217)||(16125029-16125066)
chr6 (176-217)||(18253338-18253379)
chr6 (173-214)||(29740506-29740547)
chr6 (173-214)||(33824905-33824946)
chr6 (173-214)||(33976268-33976309)
chr6 (173-217)||(1606656-1606700)
chr6 (174-214)||(2726414-2726454)
chr6 (178-214)||(3358415-3358451)
chr6 (178-214)||(6864134-6864170)
chr6 (173-217)||(12184529-12184573)
chr6 (179-215)||(17113462-17113498)
chr6 (180-216)||(32193862-32193898)
chr6 (173-217)||(34474248-34474292)
[»] chr4 (36 HSPs)
chr4 (173-214)||(56551588-56551629)
chr4 (175-217)||(19479475-19479517)
chr4 (175-217)||(40070966-40071008)
chr4 (169-214)||(13121568-13121613)
chr4 (173-214)||(31138989-31139030)
chr4 (169-214)||(37921770-37921815)
chr4 (173-214)||(43034338-43034379)
chr4 (175-212)||(43155105-43155142)
chr4 (173-214)||(49041977-49042018)
chr4 (173-217)||(3936648-3936692)
chr4 (169-217)||(24675061-24675109)
chr4 (175-214)||(11949761-11949800)
chr4 (175-214)||(19908716-19908755)
chr4 (175-214)||(22630358-22630397)
chr4 (174-217)||(28568226-28568269)
chr4 (175-214)||(37930845-37930884)
chr4 (176-214)||(675942-675980)
chr4 (179-217)||(12917656-12917694)
chr4 (176-214)||(20383512-20383550)
chr4 (174-212)||(54294419-54294457)
chr4 (173-215)||(54857611-54857653)
chr4 (173-214)||(7230304-7230345)
chr4 (175-212)||(8027395-8027432)
chr4 (177-214)||(8415495-8415532)
chr4 (169-214)||(10564457-10564502)
chr4 (173-214)||(11198352-11198393)
chr4 (177-214)||(20799394-20799431)
chr4 (175-212)||(30135166-30135203)
chr4 (179-216)||(42344620-42344657)
chr4 (175-212)||(44815967-44816004)
chr4 (178-214)||(12322697-12322733)
chr4 (178-214)||(14197432-14197468)
chr4 (178-214)||(19854589-19854625)
chr4 (174-214)||(25783446-25783486)
chr4 (173-217)||(35287503-35287547)
chr4 (170-214)||(52132295-52132339)
[»] chr3 (32 HSPs)
chr3 (169-214)||(10922300-10922345)
chr3 (175-217)||(22722423-22722465)
chr3 (173-214)||(8075809-8075850)
chr3 (173-214)||(11358258-11358299)
chr3 (173-214)||(38130955-38130996)
chr3 (173-214)||(48849759-48849800)
chr3 (173-214)||(51882196-51882237)
chr3 (175-214)||(34899121-34899160)
chr3 (180-214)||(2584011-2584045)
chr3 (173-214)||(4601868-4601909)
chr3 (177-214)||(5349552-5349589)
chr3 (173-214)||(8113558-8113599)
chr3 (173-214)||(14827549-14827590)
chr3 (179-212)||(24120422-24120455)
chr3 (179-216)||(24348409-24348446)
chr3 (177-214)||(24428473-24428510)
chr3 (173-214)||(25340920-25340961)
chr3 (173-214)||(25441496-25441537)
chr3 (179-216)||(28430567-28430604)
chr3 (173-214)||(30050424-30050465)
chr3 (183-216)||(38869524-38869557)
chr3 (177-214)||(41817523-41817560)
chr3 (177-214)||(45431972-45432009)
chr3 (173-210)||(45885473-45885510)
chr3 (173-214)||(47536476-47536517)
chr3 (175-211)||(8136630-8136666)
chr3 (174-214)||(12746354-12746394)
chr3 (174-214)||(16792971-16793011)
chr3 (173-217)||(20612273-20612317)
chr3 (176-216)||(41990583-41990623)
chr3 (173-217)||(42074124-42074168)
chr3 (178-214)||(48656900-48656936)
[»] chr8 (30 HSPs)
chr8 (176-216)||(18533691-18533731)
chr8 (173-214)||(12748925-12748966)
chr8 (173-214)||(13286155-13286195)
chr8 (177-214)||(24696006-24696043)
chr8 (173-214)||(32051528-32051569)
chr8 (176-217)||(33105412-33105453)
chr8 (173-217)||(13124359-13124403)
chr8 (178-214)||(42208470-42208506)
chr8 (175-214)||(11709010-11709049)
chr8 (175-214)||(23159465-23159504)
chr8 (178-213)||(35102668-35102703)
chr8 (176-214)||(42172242-42172280)
chr8 (173-214)||(444437-444478)
chr8 (175-216)||(5728560-5728601)
chr8 (173-214)||(8881299-8881340)
chr8 (173-214)||(9241039-9241080)
chr8 (173-214)||(10601787-10601828)
chr8 (173-214)||(13357437-13357478)
chr8 (173-214)||(15001271-15001312)
chr8 (177-214)||(15020785-15020822)
chr8 (173-214)||(19260575-19260616)
chr8 (175-216)||(24023413-24023454)
chr8 (173-214)||(24838166-24838207)
chr8 (173-214)||(27587245-27587286)
chr8 (174-211)||(30176416-30176453)
chr8 (173-210)||(32286360-32286397)
chr8 (180-217)||(37117527-37117564)
chr8 (180-216)||(4263837-4263873)
chr8 (174-214)||(7553703-7553743)
chr8 (173-217)||(26196600-26196644)
[»] chr1 (29 HSPs)
chr1 (174-214)||(6000140-6000180)
chr1 (171-214)||(25532997-25533040)
chr1 (174-216)||(28798746-28798788)
chr1 (175-216)||(12268982-12269023)
chr1 (173-214)||(34632193-34632234)
chr1 (178-214)||(1794620-1794656)
chr1 (176-216)||(17221519-17221559)
chr1 (175-214)||(22335382-22335421)
chr1 (175-214)||(33153878-33153917)
chr1 (173-215)||(17537710-17537752)
chr1 (175-217)||(28832169-28832211)
chr1 (176-214)||(33020042-33020080)
chr1 (173-214)||(8736459-8736500)
chr1 (177-214)||(10654447-10654484)
chr1 (173-214)||(14880852-14880893)
chr1 (173-214)||(16967190-16967231)
chr1 (169-214)||(29739361-29739406)
chr1 (173-214)||(34521186-34521227)
chr1 (173-214)||(41973279-41973320)
chr1 (169-214)||(45773534-45773579)
chr1 (174-214)||(5907823-5907863)
chr1 (174-214)||(11681247-11681287)
chr1 (175-215)||(14343909-14343949)
chr1 (173-217)||(15382815-15382859)
chr1 (176-216)||(15668520-15668560)
chr1 (177-217)||(24695580-24695620)
chr1 (180-212)||(28979279-28979311)
chr1 (176-212)||(46579649-46579684)
chr1 (174-214)||(47528444-47528484)
[»] scaffold0160 (1 HSPs)
scaffold0160 (174-217)||(22932-22975)
[»] chr7 (22 HSPs)
chr7 (173-214)||(27462432-27462473)
chr7 (175-216)||(37307872-37307913)
chr7 (178-217)||(7670455-7670494)
chr7 (173-212)||(14046607-14046646)
chr7 (173-212)||(14356637-14356676)
chr7 (175-214)||(18714472-18714511)
chr7 (175-214)||(19599169-19599208)
chr7 (176-214)||(20085758-20085796)
chr7 (176-214)||(28736632-28736670)
chr7 (183-216)||(1285075-1285108)
chr7 (173-214)||(8237628-8237669)
chr7 (177-214)||(10244751-10244788)
chr7 (169-214)||(18505650-18505694)
chr7 (173-214)||(19416538-19416579)
chr7 (173-214)||(19626521-19626562)
chr7 (179-216)||(39280820-39280857)
chr7 (175-216)||(41250045-41250086)
chr7 (173-214)||(42829230-42829271)
chr7 (173-214)||(46737809-46737850)
chr7 (173-209)||(2512338-2512374)
chr7 (173-217)||(10326975-10327018)
chr7 (174-214)||(46987110-46987150)
[»] chr5 (22 HSPs)
chr5 (173-214)||(22522797-22522838)
chr5 (173-214)||(40715945-40715986)
chr5 (177-217)||(16579374-16579414)
chr5 (179-214)||(22394059-22394094)
chr5 (173-216)||(42473916-42473959)
chr5 (175-217)||(5107243-5107285)
chr5 (175-217)||(13864365-13864407)
chr5 (180-214)||(20927663-20927697)
chr5 (175-217)||(31602823-31602865)
chr5 (176-214)||(31877952-31877990)
chr5 (173-214)||(6489031-6489072)
chr5 (173-214)||(6624800-6624841)
chr5 (169-214)||(10531564-10531609)
chr5 (173-214)||(16133061-16133102)
chr5 (169-214)||(20721074-20721119)
chr5 (173-214)||(34191457-34191498)
chr5 (176-213)||(40459243-40459280)
chr5 (179-215)||(1538810-1538846)
chr5 (173-217)||(14474855-14474899)
chr5 (174-214)||(18147742-18147782)
chr5 (177-217)||(18589867-18589907)
chr5 (178-214)||(31280043-31280079)
[»] scaffold1127 (1 HSPs)
scaffold1127 (176-216)||(1164-1204)
[»] scaffold0011 (1 HSPs)
scaffold0011 (174-214)||(185287-185327)
[»] scaffold0334 (1 HSPs)
scaffold0334 (176-214)||(5206-5244)
[»] scaffold1694 (1 HSPs)
scaffold1694 (169-214)||(179-224)
[»] scaffold0083 (1 HSPs)
scaffold0083 (175-212)||(45969-46006)
[»] scaffold1120 (1 HSPs)
scaffold1120 (176-216)||(1935-1975)
[»] scaffold0674 (1 HSPs)
scaffold0674 (173-217)||(6735-6779)
[»] scaffold0549 (1 HSPs)
scaffold0549 (173-217)||(8592-8636)
[»] scaffold0122 (1 HSPs)
scaffold0122 (178-214)||(31156-31192)


Alignment Details
Target: chr2 (Bit Score: 124; Significance: 6e-64; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 40295292 - 40295430
Alignment:
Q  7 attttctccatcaaagataaagaagcagcttgtgaattattattgttgatgcttgaattttgacatcattctatcatcatgatgtatattaacaatattc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||    
T  40295292 attttctccatcaaagataaagaagcagcttgtgaattattattgttgatgcttgaattttgacatcattctatcatcatgatgtatattaacaa---tc 40295388  T
Q  107 acttcgtaactttcctattgaaatttcacttctcacggataa 148  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  40295389 acttcctaactttcctattgaaatttcacttctcacggataa 40295430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 40295450 - 40295498
Alignment:
Q  169 ggtagccggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  40295450 ggtagccggggtttgaacctcgaatcttgcatacattatgcattgttca 40295498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 7206190 - 7206149
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||| ||||||||| |||||||||||||||||||||    
T  7206190 gccggggtttaaacctcggaccttgcatatattatgcattgt 7206149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 29544692 - 29544651
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  29544692 gccggggtttgaaccccggaccttgcatatattatgcattgt 29544651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 42791360 - 42791319
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  42791360 gccggggtttgaaccccggaccttgcatatattatgcattgt 42791319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 20200770 - 20200726
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    |||||||||||||||  ||| ||||||||||||||||||||||||    
T  20200770 gccggggtttgaaccctggaccttgcatatattatgcattgttca 20200726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 24581015 - 24581055
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgtt 215  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  24581015 cggggtttgaacctcgaaccttgcatatattatgcattgtt 24581055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 28771646 - 28771606
Alignment:
Q  174 ccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  28771646 ccggggttcgaaccgcggatcttgcatatattatgcattgt 28771606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 10724004 - 10723965
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcatt 212  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  10724004 gccggggtttgaacctcagaccttgcatatattatgcatt 10723965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 12413556 - 12413517
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  12413556 cggggtttgaacctcagaccttgcatatattatgcattgt 12413517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 12425616 - 12425577
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  12425616 cggggtttgaacctcagaccttgcatatattatgcattgt 12425577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 18693660 - 18693699
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  18693660 cggggtttgaaccctggatcttgcatatattatgcattgt 18693699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 27848223 - 27848184
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcatt 212  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  27848223 gccggggtttgaaccccggaccttgcatatattatgcatt 27848184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 29734754 - 29734715
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  29734754 cggggtttgaaccacggaccttgcatatattatgcattgt 29734715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 31815885 - 31815924
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  31815885 cggggtttgaaccccggaccttgcatatattatgcattgt 31815924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 43356542 - 43356581
Alignment:
Q  177 gggtttgaacctcggatcttgcatatattatgcattgttc 216  Q
    ||||| |||||||||| |||||||||||||||||||||||    
T  43356542 gggttcgaacctcggaccttgcatatattatgcattgttc 43356581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 10735827 - 10735865
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcat 211  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  10735827 gccggggtttgaaccccggaccttgcatatattatgcat 10735865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 20565074 - 20565112
Alignment:
Q  176 ggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  20565074 ggggtttgaaccccggaccttgcatatattatgcattgt 20565112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 25186241 - 25186279
Alignment:
Q  176 ggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  25186241 ggggtttgaaccccggaccttgcatatattatgcattgt 25186279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 43117189 - 43117227
Alignment:
Q  176 ggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||||| || |||||||||||||||||||||    
T  43117189 ggggtttgaacctcagaccttgcatatattatgcattgt 43117227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 11175850 - 11175809
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||| ||||||||| | ||||||||||||||||||||||||    
T  11175850 gccggagtttgaaccccagatcttgcatatattatgcattgt 11175809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 22359066 - 22359029
Alignment:
Q  177 gggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  22359066 gggtttgaactgcggatcttgcatatattatgcattgt 22359029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 22709150 - 22709109
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||| ||||||||| |||||||||||    
T  22709150 gccggggtttgaaccccggaccttgcatattttatgcattgt 22709109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 23250318 - 23250359
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgttc 216  Q
    |||||||||||||  ||| |||||||||||||||||||||||    
T  23250318 cggggtttgaaccctggaccttgcatatattatgcattgttc 23250359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 24592842 - 24592883
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| | || |||||||||||||||||||||    
T  24592842 gccggggtttgaaccccagaccttgcatatattatgcattgt 24592883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 41778940 - 41778981
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||| || |||||||||| |||||||||||||||||||||    
T  41778940 gccgggattcgaacctcggaccttgcatatattatgcattgt 41778981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 24393309 - 24393269
Alignment:
Q  174 ccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||| ||||||| || |||||||||||||||||||||    
T  24393309 ccggggttcgaacctcagaccttgcatatattatgcattgt 24393269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 31543074 - 31543038
Alignment:
Q  176 ggggtttgaacctcggatcttgcatatattatgcatt 212  Q
    |||||||||||| |||| |||||||||||||||||||    
T  31543074 ggggtttgaaccccggaccttgcatatattatgcatt 31543038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 32204609 - 32204565
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    |||| |||| ||| || ||||||||||||||||||||||||||||    
T  32204609 gccgaggttcgaatcttggatcttgcatatattatgcattgttca 32204565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 36359374 - 36359338
Alignment:
Q  178 ggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||| |||| |||||||||||||||||||||    
T  36359374 ggtttgaaccccggaccttgcatatattatgcattgt 36359338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 45032753 - 45032717
Alignment:
Q  178 ggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  45032753 ggtttgagcctcagatcttgcatatattatgcattgt 45032717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 8809369 - 8809329
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgtt 215  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8809369 cggggtttgaacctcggatcttgcatatattatgcattgtt 8809329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 15187126 - 15187087
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  15187126 cggggtttgaacctcggaccttgcatatattatgcattgt 15187087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 15473480 - 15473519
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  15473480 cggggtttgaacctcggaccttgcatatattatgcattgt 15473519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 2692276 - 2692239
Alignment:
Q  177 gggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  2692276 gggtttgaatctcggatcttgcatatattatgcattgt 2692239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 8569774 - 8569733
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  8569774 gccggggtttgaaccccggaccttgcatatattatgcattgt 8569733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 8637437 - 8637474
Alignment:
Q  177 gggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||||||| |||||||||||||||||||||    
T  8637437 gggtttgaacctcggaccttgcatatattatgcattgt 8637474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 28758288 - 28758329
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgttc 216  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  28758288 cggggtttgaacctcggactttgcatatattatgcattgttc 28758329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 31971590 - 31971553
Alignment:
Q  177 gggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||||||| |||||||||||||||||||||    
T  31971590 gggtttgaacctcggaccttgcatatattatgcattgt 31971553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 9392660 - 9392708
Alignment:
Q  169 ggtagccggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    ||||| |||||||| ||||||||| ||||||||||||||||||| ||||    
T  9392660 ggtagtcggggtttaaacctcggaccttgcatatattatgcatttttca 9392708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 34701212 - 34701169
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgttc 216  Q
    ||||| ||||||||||| || |||||||||||||||||||||||    
T  34701212 gccggagtttgaacctcagaccttgcatatattatgcattgttc 34701169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 3808117 - 3808155
Alignment:
Q  176 ggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  3808117 ggggtttgaatctcggaccttgcatatattatgcattgt 3808155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 9111110 - 9111068
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    ||||||| ||||| |||| ||||||||||||||||||||||||    
T  9111110 cggggttcgaaccccggaccttgcatatattatgcattgttca 9111068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 13496179 - 13496137
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    ||||||||||||  |||| ||||||||||||||||||||||||    
T  13496179 cggggtttgaactccggaccttgcatatattatgcattgttca 13496137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 34481412 - 34481454
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    ||||||||||||| |||| ||||||||||| ||||||||||||    
T  34481412 cggggtttgaaccccggaccttgcatatataatgcattgttca 34481454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 655745 - 655786
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||| ||||| |||| |||||||||||||||||||||    
T  655745 gccggggttcgaaccccggaccttgcatatattatgcattgt 655786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 2655023 - 2655064
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||||||| ||||| |||||||||||    
T  2655023 gccggggtttgaaccccggatcttacatattttatgcattgt 2655064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 12215811 - 12215774
Alignment:
Q  180 tttgaacctcggatcttgcatatattatgcattgttca 217  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  12215811 tttgaaccccggaccttgcatatattatgcattgttca 12215774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 16125029 - 16125066
Alignment:
Q  180 tttgaacctcggatcttgcatatattatgcattgttca 217  Q
    |||||||||||||  |||||||||||||||||||||||    
T  16125029 tttgaacctcggactttgcatatattatgcattgttca 16125066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 18253338 - 18253379
Alignment:
Q  176 ggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    ||||||||||||  ||| ||||||||||||||||||||||||    
T  18253338 ggggtttgaaccctggaccttgcatatattatgcattgttca 18253379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 29740547 - 29740506
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||| ||||| |||||||||||||||    
T  29740547 gccggggtttgaaccccggaccttgcgtatattatgcattgt 29740506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 33824946 - 33824905
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||| |||||||||| |||| |||||||||||||||||||||    
T  33824946 gccgaggtttgaaccccggaccttgcatatattatgcattgt 33824905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 33976309 - 33976268
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||| ||||||||| |||||||||||    
T  33976309 gccggggtttgaaccccggaccttgcatattttatgcattgt 33976268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 1606700 - 1606656
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    ||||| ||||||| |||||||||||||||| |||| |||||||||    
T  1606700 gccggagtttgaatctcggatcttgcatattttatacattgttca 1606656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 2726414 - 2726454
Alignment:
Q  174 ccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||| ||||| |||| |||||||||||||||||||||    
T  2726414 ccggggttcgaaccccggaccttgcatatattatgcattgt 2726454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 3358451 - 3358415
Alignment:
Q  178 ggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||||||  ||||||||||||||||||||    
T  3358451 ggtttgaacctcggactttgcatatattatgcattgt 3358415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 6864134 - 6864170
Alignment:
Q  178 ggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||  |||||||||||||||||||||||||||    
T  6864134 ggtttgaatatcggatcttgcatatattatgcattgt 6864170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 12184573 - 12184529
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    |||||| |||||||| |||| ||||||||||||||||||| ||||    
T  12184573 gccgggatttgaaccacggaccttgcatatattatgcattattca 12184529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 17113462 - 17113498
Alignment:
Q  179 gtttgaacctcggatcttgcatatattatgcattgtt 215  Q
    ||||||||||| || ||||||||||||||||||||||    
T  17113462 gtttgaacctcagaccttgcatatattatgcattgtt 17113498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 32193862 - 32193898
Alignment:
Q  180 tttgaacctcggatcttgcatatattatgcattgttc 216  Q
    ||||||||||| | |||||||||||||||||||||||    
T  32193862 tttgaacctcgtaccttgcatatattatgcattgttc 32193898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 34474292 - 34474248
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    ||||||||| |||||  ||| ||||||||||||||||||||||||    
T  34474292 gccggggttcgaaccatggaccttgcatatattatgcattgttca 34474248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 56551588 - 56551629
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  56551588 gccggggtttgaacctcggaccttgcatatattatgcattgt 56551629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 19479475 - 19479517
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    ||||||||||||| |||| ||||||||||||||||||||||||    
T  19479475 cggggtttgaaccccggaccttgcatatattatgcattgttca 19479517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 40070966 - 40071008
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    |||||||||||| ||||| ||||||||||||||||||||||||    
T  40070966 cggggtttgaacttcggaccttgcatatattatgcattgttca 40071008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 13121613 - 13121568
Alignment:
Q  169 ggtagccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||||||||| || || |||||||||||||||||||||    
T  13121613 ggtagccggggtttgaacttcagaccttgcatatattatgcattgt 13121568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 31138989 - 31139030
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||||||||||| ||||||||| |||||||||||    
T  31138989 gccggggtttgaacctcggaccttgcatattttatgcattgt 31139030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 37921815 - 37921770
Alignment:
Q  169 ggtagccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||    
T  37921815 ggtagccggggtttgaatcccggaccttgcatatattatgcattgt 37921770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 43034338 - 43034379
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||||| || |||||||||||||||||||||    
T  43034338 gccggggtttgaacctcagaccttgcatatattatgcattgt 43034379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 43155142 - 43155105
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcatt 212  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  43155142 cggggtttgaacctcagatcttgcatatattatgcatt 43155105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 49041977 - 49042018
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  49041977 gccggggtttgaaccccggaccttgcatatattatgcattgt 49042018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 3936692 - 3936648
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    ||||||||| ||||| |||| ||||||||||||||||||||||||    
T  3936692 gccggggttcgaaccccggaccttgcatatattatgcattgttca 3936648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 24675061 - 24675109
Alignment:
Q  169 ggtagccggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    |||||||||| |||||||| |  ||||||||||||||||||||||||||    
T  24675061 ggtagccgggatttgaaccccaaatcttgcatatattatgcattgttca 24675109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 11949761 - 11949800
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  11949761 cggggtttgaaccccggaccttgcatatattatgcattgt 11949800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 19908755 - 19908716
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  19908755 cggggttcgaacctcggaccttgcatatattatgcattgt 19908716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 22630358 - 22630397
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  22630358 cggggtttgaacctcagaccttgcatatattatgcattgt 22630397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 28568269 - 28568226
Alignment:
Q  174 ccggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    |||||||||||||| || |||||| |||||||||||||||||||    
T  28568269 ccggggtttgaaccccgaatcttgtatatattatgcattgttca 28568226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 37930845 - 37930884
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  37930845 cggggtttgaacctcagaccttgcatatattatgcattgt 37930884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 675980 - 675942
Alignment:
Q  176 ggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  675980 ggggtttgaaccccggaccttgcatatattatgcattgt 675942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 12917694 - 12917656
Alignment:
Q  179 gtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  12917694 gtttgaacctcggattttgcatacattatgcattgttca 12917656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 20383550 - 20383512
Alignment:
Q  176 ggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  20383550 ggggtttgaaccccggaccttgcatatattatgcattgt 20383512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 54294419 - 54294457
Alignment:
Q  174 ccggggtttgaacctcggatcttgcatatattatgcatt 212  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  54294419 ccggggtttgaaccccggaccttgcatatattatgcatt 54294457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 215
Target Start/End: Original strand, 54857611 - 54857653
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgtt 215  Q
    ||||||||||||||| |||| ||||||||| ||||||||||||    
T  54857611 gccggggtttgaaccccggaccttgcatattttatgcattgtt 54857653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 7230345 - 7230304
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||| |||||||||| |||| |||||||||||||||||||||    
T  7230345 gccgaggtttgaaccccggaccttgcatatattatgcattgt 7230304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 8027395 - 8027432
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcatt 212  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  8027395 cggggtttgaacccccgatcttgcatatattatgcatt 8027432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 8415495 - 8415532
Alignment:
Q  177 gggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  8415495 gggtttgaaccttggatcttacatatattatgcattgt 8415532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 10564457 - 10564502
Alignment:
Q  169 ggtagccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||||||||| || ||| ||||||||||| |||||    
T  10564457 ggtagccggggtttgaacctcagaccttacatatattatgtattgt 10564502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 11198393 - 11198352
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||| |||||||||||||||| ||||    
T  11198393 gccggggtttgaaccccggaccttgcatatattatgccttgt 11198352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 20799394 - 20799431
Alignment:
Q  177 gggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  20799394 gggtttgaaccccggaccttgcatatattatgcattgt 20799431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 30135203 - 30135166
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcatt 212  Q
    |||||||||||||||||||||  |||||||||||||||    
T  30135203 cggggtttgaacctcggatctgacatatattatgcatt 30135166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 42344620 - 42344657
Alignment:
Q  179 gtttgaacctcggatcttgcatatattatgcattgttc 216  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  42344620 gtttgaacctcggaccttgcatatattatacattgttc 42344657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 44816004 - 44815967
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcatt 212  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  44816004 cggggtttgaaccccggaccttgcatatattatgcatt 44815967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 12322733 - 12322697
Alignment:
Q  178 ggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||| |||| |||||||||||||||||||||    
T  12322733 ggtttgaaccccggaacttgcatatattatgcattgt 12322697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 14197432 - 14197468
Alignment:
Q  178 ggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||| |||||||| |||||||||||||||||    
T  14197432 ggtttgaaccccggatcttacatatattatgcattgt 14197468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 19854625 - 19854589
Alignment:
Q  178 ggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  19854625 ggttcgaaccccggatcttgcatatattatgcattgt 19854589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 25783446 - 25783486
Alignment:
Q  174 ccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||| ||||||||| |||| |||||||||||||||||||||    
T  25783446 ccggagtttgaaccccggaccttgcatatattatgcattgt 25783486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 35287503 - 35287547
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    ||||||||| ||||| |||| ||||||||| ||||||||||||||    
T  35287503 gccggggttggaaccccggaccttgcatattttatgcattgttca 35287547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 52132295 - 52132339
Alignment:
Q  170 gtagccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||| ||||| | || |||||||||||||||||||||    
T  52132295 gtagccggggttcgaaccacagaccttgcatatattatgcattgt 52132339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 10922300 - 10922345
Alignment:
Q  169 ggtagccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  10922300 ggtagtcggggtttgaaccccggatcttgcatatattatgcattgt 10922345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 22722465 - 22722423
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    |||||||||||||||||| ||||||||| ||||||||||||||    
T  22722465 cggggtttgaacctcggaccttgcatattttatgcattgttca 22722423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 8075850 - 8075809
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||||| || |||||||||||||||||||||    
T  8075850 gccggggtttgaacctcagaccttgcatatattatgcattgt 8075809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 11358299 - 11358258
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||||||||||||||||||| |||||    
T  11358299 gccggggtttgaaccccggatcttgcatatattatgaattgt 11358258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 38130955 - 38130996
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  38130955 gccggggtttgaaccccggaccttgcatatattatgcattgt 38130996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 48849759 - 48849800
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  48849759 gccggggtttgaaccccggaccttgcatatattatgcattgt 48849800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 51882196 - 51882237
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||||||  |||||||||||||||||||||||||    
T  51882196 gccggggtttgaaccctggatcttgcatatattatgcattgt 51882237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 34899160 - 34899121
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  34899160 cggggtttgaaccccggaccttgcatatattatgcattgt 34899121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Original strand, 2584011 - 2584045
Alignment:
Q  180 tttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||||||||||||| |||||||||    
T  2584011 tttgaacctcggatcttgcatatataatgcattgt 2584045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 4601909 - 4601868
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||| ||||||| |||||||||||||    
T  4601909 gccggggtttgaaccccggaccttgcatttattatgcattgt 4601868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 5349589 - 5349552
Alignment:
Q  177 gggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||||||| ||||||||||| |||||||||    
T  5349589 gggtttgaacctcggaccttgcatatataatgcattgt 5349552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 8113558 - 8113599
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||| || ||||| ||||||||||||||||||||||||||    
T  8113558 gccgggattcgaaccgcggatcttgcatatattatgcattgt 8113599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 14827590 - 14827549
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||| |||| |||||||||||||| |||||||||||    
T  14827590 gccggggtttaaaccccggatcttgcatattttatgcattgt 14827549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 24120422 - 24120455
Alignment:
Q  179 gtttgaacctcggatcttgcatatattatgcatt 212  Q
    ||||||||| ||||||||||||||||||||||||    
T  24120422 gtttgaaccgcggatcttgcatatattatgcatt 24120455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 24348446 - 24348409
Alignment:
Q  179 gtttgaacctcggatcttgcatatattatgcattgttc 216  Q
    ||||||||||| || |||||||||||||||||||||||    
T  24348446 gtttgaacctctgaccttgcatatattatgcattgttc 24348409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 24428473 - 24428510
Alignment:
Q  177 gggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  24428473 gggtttgaacctcggactttgcatatattatgcattgt 24428510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 25340920 - 25340961
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||| ||||||||| |||||||||||    
T  25340920 gccggggtttgaaccccggaccttgcatattttatgcattgt 25340961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 25441496 - 25441537
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| | || |||||||||||||||||||||    
T  25441496 gccggggtttgaaccccagaccttgcatatattatgcattgt 25441537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 28430567 - 28430604
Alignment:
Q  179 gtttgaacctcggatcttgcatatattatgcattgttc 216  Q
    ||||||||||| || |||||||||||||||||||||||    
T  28430567 gtttgaacctcagaccttgcatatattatgcattgttc 28430604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 30050424 - 30050465
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||| ||||||||| || |||||||||||||||||||||||    
T  30050424 gccggagtttgaaccgcgaatcttgcatatattatgcattgt 30050465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 38869524 - 38869557
Alignment:
Q  183 gaacctcggatcttgcatatattatgcattgttc 216  Q
    ||||||||||||||| ||||||||||||||||||    
T  38869524 gaacctcggatcttgtatatattatgcattgttc 38869557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 41817560 - 41817523
Alignment:
Q  177 gggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  41817560 gggtttgaaccccggaccttgcatatattatgcattgt 41817523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 45432009 - 45431972
Alignment:
Q  177 gggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  45432009 gggtttgaaccccggaccttgcatatattatgcattgt 45431972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 45885473 - 45885510
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgca 210  Q
    ||||||||||||||||| || |||||||||||||||||    
T  45885473 gccggggtttgaacctcagaccttgcatatattatgca 45885510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 47536476 - 47536517
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||| |||||||||||||| ||||||||| |||||||||||    
T  47536476 gccggagtttgaacctcggaccttgcatattttatgcattgt 47536517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 8136630 - 8136666
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcat 211  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  8136630 cggggtttgaaccttggaccttgcatatattatgcat 8136666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 12746354 - 12746394
Alignment:
Q  174 ccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||| ||||| |||||| |||||||||||||||||||||    
T  12746354 ccggggattgaatctcggaccttgcatatattatgcattgt 12746394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 16792971 - 16793011
Alignment:
Q  174 ccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||  ||| |||||||||||||||||||||    
T  16792971 ccggggtttgaaccctggaccttgcatatattatgcattgt 16793011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 20612273 - 20612317
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    ||||||||||||||| |  | ||||||||||||||||||||||||    
T  20612273 gccggggtttgaaccccaaaccttgcatatattatgcattgttca 20612317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 41990583 - 41990623
Alignment:
Q  176 ggggtttgaacctcggatcttgcatatattatgcattgttc 216  Q
    |||||| |||||||||| ||||||||||||||| |||||||    
T  41990583 ggggttcgaacctcggaccttgcatatattatgtattgttc 41990623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 42074168 - 42074124
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    ||||| ||| ||||||| || ||||||||||||||||||||||||    
T  42074168 gccggagttcgaacctcagaccttgcatatattatgcattgttca 42074124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 48656900 - 48656936
Alignment:
Q  178 ggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||| |||| |||||||||||||||||||||    
T  48656900 ggtttgaaccccggaccttgcatatattatgcattgt 48656936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 18533731 - 18533691
Alignment:
Q  176 ggggtttgaacctcggatcttgcatatattatgcattgttc 216  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  18533731 ggggtttgaaccccggatcttgcatatattatgcattgttc 18533691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 12748966 - 12748925
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  12748966 gccggggtttgaaccccggaccttgcatatattatgcattgt 12748925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 13286195 - 13286155
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  13286195 gccggggtttgaacc-cggatcttgcatatattatgcattgt 13286155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 24696006 - 24696043
Alignment:
Q  177 gggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  24696006 gggtttgaatctcggatcttgcatatattatgcattgt 24696043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 32051528 - 32051569
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  32051528 gccggggtttgaaccccggaccttgcatatattatgcattgt 32051569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 33105453 - 33105412
Alignment:
Q  176 ggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  33105453 ggggtttgaaccccggaccttgcatatattatgcattgttca 33105412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 13124359 - 13124403
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    ||||||||||||||| |||| ||||||||| ||||||||||||||    
T  13124359 gccggggtttgaaccccggaccttgcatattttatgcattgttca 13124403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 42208470 - 42208506
Alignment:
Q  178 ggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||||||||||||||||||||    
T  42208470 ggtttgaacctcggaccttgcatatattatgcattgt 42208506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 11709049 - 11709010
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||| ||||| |||||||||||||||||||||    
T  11709049 cggggtttgaacttcggaccttgcatatattatgcattgt 11709010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 23159504 - 23159465
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  23159504 cggggtttgaaccccgaatcttgcatatattatgcattgt 23159465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 213
Target Start/End: Original strand, 35102668 - 35102703
Alignment:
Q  178 ggtttgaacctcggatcttgcatatattatgcattg 213  Q
    |||| |||||||||||||||||||||||||||||||    
T  35102668 ggttcgaacctcggatcttgcatatattatgcattg 35102703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 42172242 - 42172280
Alignment:
Q  176 ggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  42172242 ggggtttgaactccggatcttgcatatattatgcattgt 42172280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 444478 - 444437
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||| |||| |||| |||||||||||||||||||||    
T  444478 gccggggtttaaaccccggaccttgcatatattatgcattgt 444437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 5728601 - 5728560
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgttc 216  Q
    |||||||| ||| ||||| |||||||||||||||||||||||    
T  5728601 cggggtttaaacttcggagcttgcatatattatgcattgttc 5728560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 8881340 - 8881299
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||||||  ||| |||||||||||||||||||||    
T  8881340 gccggggtttgaaccctggaccttgcatatattatgcattgt 8881299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 9241080 - 9241039
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||||| ||||| ||| |||||||||||||||||    
T  9241080 gccggggtttgaacatcggaccttacatatattatgcattgt 9241039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 10601828 - 10601787
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||| | || |||||||||||||||||||||||    
T  10601828 gccggggtttgaatcccgaatcttgcatatattatgcattgt 10601787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 13357437 - 13357478
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||| ||||||||||||| | |||||||||||||||||||||    
T  13357437 gccgaggtttgaacctcgtaccttgcatatattatgcattgt 13357478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 15001271 - 15001312
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||||||| ||| ||||||||| |||||||||||    
T  15001271 gccggggtttgaaccttggaccttgcatattttatgcattgt 15001312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 15020822 - 15020785
Alignment:
Q  177 gggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  15020822 gggtttgaaccccggatcttgcatatattatacattgt 15020785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 19260575 - 19260616
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||| ||| |||||||||||||||||    
T  19260575 gccggggtttgaaccccggaccttacatatattatgcattgt 19260616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 24023413 - 24023454
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgttc 216  Q
    ||||||||||||| |||| ||||||||| |||||||||||||    
T  24023413 cggggtttgaaccccggaccttgcatattttatgcattgttc 24023454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 24838166 - 24838207
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||| ||||||||| |||||||||||    
T  24838166 gccggggtttgaaccccggaccttgcatattttatgcattgt 24838207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 27587286 - 27587245
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||| ||||||||||| |||||||||    
T  27587286 gccggggtttgaaccccggaccttgcatatatcatgcattgt 27587245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 30176416 - 30176453
Alignment:
Q  174 ccggggtttgaacctcggatcttgcatatattatgcat 211  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  30176416 ccggggtttgaaccccggaccttgcatatattatgcat 30176453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 32286360 - 32286397
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgca 210  Q
    ||||||||||||||| || |||||||||||||||||||    
T  32286360 gccggggtttgaaccccgaatcttgcatatattatgca 32286397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 37117527 - 37117564
Alignment:
Q  180 tttgaacctcggatcttgcatatattatgcattgttca 217  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  37117527 tttgaacctcagatcttgaatatattatgcattgttca 37117564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 4263873 - 4263837
Alignment:
Q  180 tttgaacctcggatcttgcatatattatgcattgttc 216  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  4263873 tttgaacctcggaccttgcatacattatgcattgttc 4263837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 7553743 - 7553703
Alignment:
Q  174 ccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||| |||||||||| ||| |||||||||||||||||||||    
T  7553743 ccggagtttgaaccttggaccttgcatatattatgcattgt 7553703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 26196600 - 26196644
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    ||||| ||||||||| || | ||||||||||||||||||||||||    
T  26196600 gccggagtttgaaccacgaaccttgcatatattatgcattgttca 26196644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 6000140 - 6000180
Alignment:
Q  174 ccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  6000140 ccggggtttgaacctcggaccttgcatatattatgcattgt 6000180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 25533040 - 25532997
Alignment:
Q  171 tagccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||||| |||| |||||||||||||||||||||    
T  25533040 tagccggggtttgaaccccggaccttgcatatattatgcattgt 25532997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 28798746 - 28798788
Alignment:
Q  174 ccggggtttgaacctcggatcttgcatatattatgcattgttc 216  Q
    ||||||||||||||||||||||| |||||||||| ||||||||    
T  28798746 ccggggtttgaacctcggatcttacatatattatacattgttc 28798788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 12268982 - 12269023
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgttc 216  Q
    ||||||||||||| |||| |||||||||||||||||||||||    
T  12268982 cggggtttgaaccccggaccttgcatatattatgcattgttc 12269023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 34632234 - 34632193
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||| |||||||||||||||||||||||||||| ||||||    
T  34632234 gccgggatttgaacctcggatcttgcatatattatacattgt 34632193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 1794656 - 1794620
Alignment:
Q  178 ggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||| ||||||||||||||||||||||||||    
T  1794656 ggtttgaaccccggatcttgcatatattatgcattgt 1794620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 17221519 - 17221559
Alignment:
Q  176 ggggtttgaacctcggatcttgcatatattatgcattgttc 216  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  17221519 ggggttcgaacctcggaccttgcatatattatgcattgttc 17221559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 22335421 - 22335382
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  22335421 cggggtttgaacctcagaccttgcatatattatgcattgt 22335382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 33153878 - 33153917
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  33153878 cggggtttgaacctcggaccttacatatattatgcattgt 33153917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 17537752 - 17537710
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgtt 215  Q
    ||||||||||||||  ||||||||| |||||||||||||||||    
T  17537752 gccggggtttgaacaccggatcttgtatatattatgcattgtt 17537710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 28832169 - 28832211
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    |||| |||||||||| || ||||||||||||||||||||||||    
T  28832169 cgggatttgaacctcagaccttgcatatattatgcattgttca 28832211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 33020042 - 33020080
Alignment:
Q  176 ggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||||| || |||||||||||||||||||||    
T  33020042 ggggtttgaacctcagaccttgcatatattatgcattgt 33020080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 8736500 - 8736459
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||| ||||||||| |||||||||||    
T  8736500 gccggggtttgaaccccggaccttgcatattttatgcattgt 8736459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 10654447 - 10654484
Alignment:
Q  177 gggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  10654447 gggtttgaaccacggaccttgcatatattatgcattgt 10654484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 14880893 - 14880852
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||| |||||||||| || |||||||||||||||||||||    
T  14880893 gccgggatttgaacctcagaccttgcatatattatgcattgt 14880852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 16967190 - 16967231
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||| |||||||||||| | |||||||||||||||||||||    
T  16967190 gccggagtttgaacctcgaaccttgcatatattatgcattgt 16967231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 29739406 - 29739361
Alignment:
Q  169 ggtagccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||| |||||||||| |||| ||||||||| |||||||||||    
T  29739406 ggtagccgaggtttgaaccccggaccttgcatattttatgcattgt 29739361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 34521186 - 34521227
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||| |||||||||| |||| |||||||||||||||||||||    
T  34521186 gccgaggtttgaaccccggaccttgcatatattatgcattgt 34521227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 41973320 - 41973279
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||| ||||| |||| |||||||||||||||||||||    
T  41973320 gccggggttcgaaccccggaccttgcatatattatgcattgt 41973279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 45773534 - 45773579
Alignment:
Q  169 ggtagccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||||||| | ||||||| |||| |||||||||||    
T  45773534 ggtagccggggtttgaaccacagatcttgtatattttatgcattgt 45773579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 5907863 - 5907823
Alignment:
Q  174 ccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||  ||| |||||||||||||||||||||    
T  5907863 ccggggtttgaaccctggaccttgcatatattatgcattgt 5907823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 11681287 - 11681247
Alignment:
Q  174 ccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||||| | || |||||||||||||||||||||    
T  11681287 ccggggtttgaaccccagaccttgcatatattatgcattgt 11681247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 14343909 - 14343949
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgtt 215  Q
    ||||||| |||||||| ||||||||||||||||||| ||||    
T  14343909 cggggttcgaacctcgaatcttgcatatattatgcactgtt 14343949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 15382815 - 15382859
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    |||||| || |||||||||| |||||||||||||| |||||||||    
T  15382815 gccgggtttcgaacctcggaccttgcatatattatacattgttca 15382859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 15668560 - 15668520
Alignment:
Q  176 ggggtttgaacctcggatcttgcatatattatgcattgttc 216  Q
    |||||||||||| |||| ||||||||| |||||||||||||    
T  15668560 ggggtttgaaccccggaccttgcatattttatgcattgttc 15668520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 24695620 - 24695580
Alignment:
Q  177 gggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    |||||||||||||| || |||||||||||||| ||||||||    
T  24695620 gggtttgaacctcgaattttgcatatattatgtattgttca 24695580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 28979279 - 28979311
Alignment:
Q  180 tttgaacctcggatcttgcatatattatgcatt 212  Q
    ||||||||||| |||||||||||||||||||||    
T  28979279 tttgaacctcgaatcttgcatatattatgcatt 28979311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 46579649 - 46579684
Alignment:
Q  176 ggggtttgaacctcggatcttgcatatattatgcatt 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  46579649 ggggtttgaac-tcggatcttgcatatattatgcatt 46579684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 47528444 - 47528484
Alignment:
Q  174 ccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||| |||||||||| ||||| |||||||||||||||    
T  47528444 ccggggttcgaacctcggaccttgcgtatattatgcattgt 47528484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 22975 - 22932
Alignment:
Q  174 ccggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||    
T  22975 ccggggtttgaacctcggaccttgcatattttatgcattgttca 22932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 27462432 - 27462473
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  27462432 gccggggtttgaaccccggaccttgcatatattatgcattgt 27462473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 37307872 - 37307913
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgttc 216  Q
    |||| ||||||| |||||||||||||||||||||||||||||    
T  37307872 cgggatttgaacatcggatcttgcatatattatgcattgttc 37307913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 7670494 - 7670455
Alignment:
Q  178 ggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    |||||||||| |||| ||||||||||||||||||||||||    
T  7670494 ggtttgaaccccggaccttgcatatattatgcattgttca 7670455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 14046607 - 14046646
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcatt 212  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  14046607 gccggggtttgaaccccgtatcttgcatatattatgcatt 14046646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 14356637 - 14356676
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcatt 212  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  14356637 gccggggtttgaaccccgtatcttgcatatattatgcatt 14356676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 18714511 - 18714472
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  18714511 cggggtttgaaccccggaccttgcatatattatgcattgt 18714472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 19599208 - 19599169
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  19599208 cggggtttgaaccccggaccttgcatatattatgcattgt 19599169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 20085758 - 20085796
Alignment:
Q  176 ggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  20085758 ggggtttgaaccccggaccttgcatatattatgcattgt 20085796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 28736632 - 28736670
Alignment:
Q  176 ggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||||| ||||||||||| |||||||||    
T  28736632 ggggtttgaacctcggaccttgcatatatcatgcattgt 28736670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 1285075 - 1285108
Alignment:
Q  183 gaacctcggatcttgcatatattatgcattgttc 216  Q
    ||||| ||||||||||||||||||||||||||||    
T  1285075 gaaccccggatcttgcatatattatgcattgttc 1285108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 8237628 - 8237669
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||||||||  ||| ||||||||||||||||    
T  8237628 gccggggtttgaacctcggactttgtatatattatgcattgt 8237669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 10244788 - 10244751
Alignment:
Q  177 gggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  10244788 gggtttgaaccccggaccttgcatatattatgcattgt 10244751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 18505650 - 18505694
Alignment:
Q  169 ggtagccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||| ||||||||||||| |||||||||||||| |||||||||||    
T  18505650 ggtagtcggggtttgaacc-cggatcttgcatattttatgcattgt 18505694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 19416579 - 19416538
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||| ||||||||| |||||||||||    
T  19416579 gccggggtttgaaccccggaccttgcatattttatgcattgt 19416538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 19626521 - 19626562
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||| ||||||||| |||| |||||||||||||||||||||    
T  19626521 gccggtgtttgaaccccggaccttgcatatattatgcattgt 19626562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 39280820 - 39280857
Alignment:
Q  179 gtttgaacctcggatcttgcatatattatgcattgttc 216  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  39280820 gtttgaaccccggaccttgcatatattatgcattgttc 39280857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 41250045 - 41250086
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgttc 216  Q
    ||||| |||||||||||| |||||||||||||| ||||||||    
T  41250045 cggggcttgaacctcggaccttgcatatattatacattgttc 41250086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 42829230 - 42829271
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||| ||||||||| |||| |||||||||||||||||||||    
T  42829230 gccggagtttgaaccccggagcttgcatatattatgcattgt 42829271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 46737850 - 46737809
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||| ||||||||| |||| |||||||||||||||||||||    
T  46737850 gccggtgtttgaaccccggaccttgcatatattatgcattgt 46737809  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 2512374 - 2512338
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgc 209  Q
    |||||||||||||||||| | ||||||||||||||||    
T  2512374 gccggggtttgaacctcgtaccttgcatatattatgc 2512338  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 10327018 - 10326975
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    |||| ||||||||||| ||| ||||||||||||||||||||||||    
T  10327018 gccgaggtttgaacct-ggaccttgcatatattatgcattgttca 10326975  T

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Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 46987150 - 46987110
Alignment:
Q  174 ccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||| ||||| |||| |||||||||||||||||||||    
T  46987150 ccggggttcgaaccccggaccttgcatatattatgcattgt 46987110  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 22522797 - 22522838
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  22522797 gccggggtttgaaccccggaccttgcatatattatgcattgt 22522838  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 40715945 - 40715986
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  40715945 gccggggtttgaaccccggaccttgcatatattatgcattgt 40715986  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 16579374 - 16579414
Alignment:
Q  177 gggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  16579374 gggtttgaaccacggaccttgcatatattatgcattgttca 16579414  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 214
Target Start/End: Complemental strand, 22394094 - 22394059
Alignment:
Q  179 gtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||||||||| |||||||||||||||||    
T  22394094 gtttgaacctcggatcttacatatattatgcattgt 22394059  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 42473959 - 42473916
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgttc 216  Q
    |||| |||||||||| |||| |||||||||||||||||||||||    
T  42473959 gccgtggtttgaaccccggaccttgcatatattatgcattgttc 42473916  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 5107243 - 5107285
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||    
T  5107243 cggggttcgaacctcggaccttgcatatattatgcattattca 5107285  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 13864407 - 13864365
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    ||||||||||||| |||| ||||||||||||||| ||||||||    
T  13864407 cggggtttgaaccccggaccttgcatatattatgtattgttca 13864365  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Complemental strand, 20927697 - 20927663
Alignment:
Q  180 tttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||||||||||||||||| |||||    
T  20927697 tttgaacctcggatcttgcatatattatgtattgt 20927663  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 31602823 - 31602865
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    ||||||||||| |||| | ||||||||||||||||||||||||    
T  31602823 cggggtttgaatctcgaaccttgcatatattatgcattgttca 31602865  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 31877990 - 31877952
Alignment:
Q  176 ggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  31877990 ggggtttgaacccctgatcttgcatatattatgcattgt 31877952  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 6489072 - 6489031
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| | || |||||||||||||||||||||    
T  6489072 gccggggtttgaaccccagaccttgcatatattatgcattgt 6489031  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 6624841 - 6624800
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||| ||||| |||| |||||||||||||||||||||    
T  6624841 gccggggttcgaaccccggaccttgcatatattatgcattgt 6624800  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 10531609 - 10531564
Alignment:
Q  169 ggtagccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||| ||||||||||||| |||| | |||||||||||||||||||    
T  10531609 ggtagtcggggtttgaaccacggaccgtgcatatattatgcattgt 10531564  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 16133061 - 16133102
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||| |||||| || |||||||||||||||||||||    
T  16133061 gccggggtttaaacctctgaccttgcatatattatgcattgt 16133102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 20721119 - 20721074
Alignment:
Q  169 ggtagccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||| ||||||||||||| |||| ||||||||||||||| |||||    
T  20721119 ggtagtcggggtttgaaccccggaccttgcatatattatgtattgt 20721074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 34191498 - 34191457
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    ||||||||||||||| |||| ||||||||| |||||||||||    
T  34191498 gccggggtttgaaccccggaccttgcatattttatgcattgt 34191457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 40459243 - 40459280
Alignment:
Q  176 ggggtttgaacctcggatcttgcatatattatgcattg 213  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  40459243 ggggtttgaacctcggatattgcatatattatgtattg 40459280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 1538810 - 1538846
Alignment:
Q  179 gtttgaacctcggatcttgcatatattatgcattgtt 215  Q
    |||||||||||||| |||||||||||||||| |||||    
T  1538810 gtttgaacctcggaccttgcatatattatgcgttgtt 1538846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 14474899 - 14474855
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    |||||||||||||||  ||| |||||||||||||||| |||||||    
T  14474899 gccggggtttgaaccctggaccttgcatatattatgcgttgttca 14474855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 18147782 - 18147742
Alignment:
Q  174 ccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||| ||||||| |||||| |||||||||||||||||||    
T  18147782 ccgggggttgaaccccggatcctgcatatattatgcattgt 18147742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 18589867 - 18589907
Alignment:
Q  177 gggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    |||||| |||| |||| ||||||||||||||||||||||||    
T  18589867 gggtttaaaccccggaccttgcatatattatgcattgttca 18589907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 31280079 - 31280043
Alignment:
Q  178 ggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  31280079 ggtttgaaccccggatattgcatatattatgcattgt 31280043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1127 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1127
Description:

Target: scaffold1127; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 1164 - 1204
Alignment:
Q  176 ggggtttgaacctcggatcttgcatatattatgcattgttc 216  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  1164 ggggtttgaaccccggaccttgcatatattatgcattgttc 1204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 185327 - 185287
Alignment:
Q  174 ccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  185327 ccggggtttgaaccccggatcttgcatattttatgcattgt 185287  T

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Target: scaffold0334 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 5244 - 5206
Alignment:
Q  176 ggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||||||| || |||||||||||||||||||||    
T  5244 ggggtttgaacctcagaccttgcatatattatgcattgt 5206  T

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Target: scaffold1694 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold1694
Description:

Target: scaffold1694; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 224 - 179
Alignment:
Q  169 ggtagccggggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||| |||||||||||| || |||||||| ||||||||||||    
T  224 ggtagccgaggtttgaacctcagaccttgcatacattatgcattgt 179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 46006 - 45969
Alignment:
Q  175 cggggtttgaacctcggatcttgcatatattatgcatt 212  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  46006 cggggttcgaacctcggatcttgcatatattatacatt 45969  T

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Target: scaffold1120 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1120
Description:

Target: scaffold1120; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 1975 - 1935
Alignment:
Q  176 ggggtttgaacctcggatcttgcatatattatgcattgttc 216  Q
    |||||||||||| || | |||||||||||||||||||||||    
T  1975 ggggtttgaaccacgaaccttgcatatattatgcattgttc 1935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 6779 - 6735
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    ||||||||| |||||  ||| ||||||||||||||||||||||||    
T  6779 gccggggttcgaaccatggaacttgcatatattatgcattgttca 6735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 8592 - 8636
Alignment:
Q  173 gccggggtttgaacctcggatcttgcatatattatgcattgttca 217  Q
    ||||||||| |||||  ||| ||||||||||||||||||||||||    
T  8592 gccggggttcgaaccatggaacttgcatatattatgcattgttca 8636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 31156 - 31192
Alignment:
Q  178 ggtttgaacctcggatcttgcatatattatgcattgt 214  Q
    |||||||||| | ||||||||||||||||||||||||    
T  31156 ggtttgaaccgcagatcttgcatatattatgcattgt 31192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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