View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1442-Insertion-12 (Length: 201)
Name: NF1442-Insertion-12
Description: NF1442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1442-Insertion-12 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-106
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 5162636 - 5162829
Alignment:
| Q |
8 |
acaggccctatgctagagtattattgaaaagatgaaaagaaaacgagcaaaaactgttttttactcgagagcatgctctgtcgatggaatcattcccttc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5162636 |
acaggccctatgctagagtattattgaaaagatgaaaagaaaacgagcaaaaactgttttttactcgagagcatgctctgtcgatggaatcattcccttc |
5162735 |
T |
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| Q |
108 |
tagagagccttgtgtacaatactaactccaatgccattaatatttgcctttagttttcttttgtcattaattaattcttcaaccaccaaatcgg |
201 |
Q |
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| T |
5162736 |
tagagagccttgtgtacaatactaactccaatgccattaatatttgcctttagttttcttttgtcattaattaattcttcaaccaccaaatcgg |
5162829 |
T |
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Target: chr4; HSP #2
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 5184468 - 5184660
Alignment:
| Q |
8 |
acaggccctatgctagagtattattgaaaagatgaaaagaaaacgagcaaaaactgttttttactcgagagcatgctctgtcgatggaatcattcccttc |
107 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5184468 |
acaggccctatgctagagtattattgaaaagacgaaaagaaaacgagcaaaaactgttttttactcgagagcatgctctgtcgatggaatcattcccttc |
5184567 |
T |
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| Q |
108 |
tagagagccttgtgtacaatactaactccaatgccattaatatttgcctttagttttcttttgtcattaattaattcttcaaccaccaaatcgg |
201 |
Q |
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| T |
5184568 |
tagagagccttgtgtacaatactaactccaatgccattaatatttgcctttagttttcttttgtcaataa-taattcttcaagcaccaaatcgg |
5184660 |
T |
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