View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1442-Insertion-13 (Length: 194)
Name: NF1442-Insertion-13
Description: NF1442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1442-Insertion-13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 85; Significance: 7e-41; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 7e-41
Query Start/End: Original strand, 105 - 189
Target Start/End: Complemental strand, 42518444 - 42518360
Alignment:
| Q |
105 |
ctcatcaaattaattaattgaaatctaaacaatcgtgtacctatgaaaaaatcttaacaatctaaggaatgataatatcaacaaa |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42518444 |
ctcatcaaattaattaattgaaatctaaacaatcgtgtacctatgaaaaaatcttaacaatctaaggaatgataatatcaacaaa |
42518360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 51 - 189
Target Start/End: Complemental strand, 42509087 - 42508933
Alignment:
| Q |
51 |
cacaagagagaattaatgtgtcaaattaagtgtgcataatgaa-----------ttagtataatactcatcaaattaattaattgaaatctaaacaatcg |
139 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||| || | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42509087 |
cacaagagagaattaatgtgtcgaattaagtgtgcataatgaaattatactacattagt-tatttctcatcaaattaattaattgaaatctaaacaatcg |
42508989 |
T |
|
| Q |
140 |
tgtacct------atgaaaaaatcttaacaatctaaggaatgataatatcaacaaa |
189 |
Q |
| |
|
||||| | | |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42508988 |
tgtacttaaaaaaaaaaaaaaatcttaacaatataaggaatgataatatcaacaaa |
42508933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 42518533 - 42518478
Alignment:
| Q |
51 |
cacaagagagaattaatgtgtcaaattaagtgtgcataatgaattagtataatact |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42518533 |
cacaagagagaattaatgtgtcaaattaagtgtgcataatgaattagtataatact |
42518478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University