View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1442-Insertion-2 (Length: 306)

Name: NF1442-Insertion-2
Description: NF1442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1442-Insertion-2
NF1442-Insertion-2
[»] chr2 (1 HSPs)
chr2 (17-306)||(39728288-39728577)


Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 39728577 - 39728288
Alignment:
Q  17 ttgtttatgtttatattgttgaattaaaaatatgcaacatgatcttaggaaaatagatagtgtatagctgcatcggtccaagttgttgttcccatcatta 116  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39728577 ttgtttatgtttatatttttgaattaaaaatatgcaatatgatcttaggaaaatagatagtgtatagctgcatcggtccaagttgttgttcccatcatta 39728478  T
Q  117 ttttcttattgggttggtttgatgcaccagttcaaatatcgtgagccaattatatatgcatgcgtatgtttgtccatttcgtaaatattttatctagacc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  39728477 ttttcttattgggttggtttgatgcaccagttcaaatatcgtgagccaattatatatgcatgcgtatgttggtccatttcgtaaatattttatctagatc 39728378  T
Q  217 gaggaatttaacaaagatttttggaatgttaagtgcgtgcaaaatatacaagcattttgtattgtattgttttcaaaatcttcattctaa 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39728377 gaggaatttaacaaagatttttggaatgttaagtgcgtgcaaaatatacaagcattttgtattgtattgttttcaaaatcttcattctaa 39728288  T

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