View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1442-Insertion-3 (Length: 593)
Name: NF1442-Insertion-3
Description: NF1442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1442-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 5 - 580
Target Start/End: Complemental strand, 31548132 - 31547547
Alignment:
| Q |
5 |
acaatgatgggaagacctggacatccagacgaaaaagggttgatacctcgttcattagaacaaatatttcaagcaaaacagtctcagcaacctcaaggct |
104 |
Q |
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| T |
31548132 |
acaatgatgggaagacctggacatcctgacgaaaaagggttgatacctcgttcgttagaacaaatatttcaagcaaaacagtctcaacaacctcaaggct |
31548033 |
T |
|
| Q |
105 |
ggaaatacgaaatgcaggtaacattcgagtactttcttcttactt-acct--tattatttcattttaatgtaaacaattttttgaacatgat-----aag |
196 |
Q |
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| T |
31548032 |
ggaagtacgaaatgcaggtaacatcggagtactttcttcttactttacctcatattattgcattgtaatgtaaacaattttttgaacatgaccagagaag |
31547933 |
T |
|
| Q |
197 |
gtttctgttataatattttcaggtgtcaatgttggaaatatacaatgaaaccattcgagatctgttatctacaaacagattatcatcagatgtaacacgc |
296 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||| |||||||||||| |
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| T |
31547932 |
gtttttgttataaaattttcaggtgtcaatgttggaaatatacaatgaaactattcgtgatctgttatctacaaacagatcatcatcggatgtaacacgc |
31547833 |
T |
|
| Q |
297 |
gtggaaaatggtactcctggaaagcaatacacaatcaaacatgacgtaaatggaaatacacatgtttctgatcttacagtagtggatgttcacagtgcga |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31547832 |
gtggaaaatggtactcctggaaagcaatacacaatcaaacatgacgtaaatggaaatacacatgtttctgatcttacagtagtggatgttcacagtgcga |
31547733 |
T |
|
| Q |
397 |
aagaagtcgcgtttcttttaaatcaagctgcaaatagccggtaactattgttaaggcactgaaaaatgcaa---atgaacttgctattttatgactagaa |
493 |
Q |
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| T |
31547732 |
aagaggtcgcgtttcttttaaatcaagctgcaaatagcaggtaactattgttaagacactggaaaatgcaaatgatgaacttgccattttataactagaa |
31547633 |
T |
|
| Q |
494 |
ttttatagctatgtttttctgagaatatatttttattggattaaaatggacaaactggattggtaaaacataatttgacatgatttt |
580 |
Q |
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|| ||||||| ||||| ||| ||||||||||||| ||||| | ||||||||||| || |||||||||||||||| |||||||| |
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| T |
31547632 |
ttagatagctacatttttaggag-atatatttttattaaattaagagggacaaactggtttagtaaaacataatttgatatgatttt |
31547547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 211 - 434
Target Start/End: Original strand, 34651370 - 34651596
Alignment:
| Q |
211 |
attttcaggtgtcaatgttggaaatatacaatgaaaccattcgagatctgttatctacaaacagattat----catcagatgtaacacgcgtggaaaatg |
306 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||| ||| |||| |||||| || || | ||||||| ||| || | ||||||| |
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| T |
34651370 |
atttacaggtgtcaatgttggaaatatacaatgaaacgattcgtgatttgttggctacaa-caaataagtccccatcagacacaacccgtgcagaaaatg |
34651468 |
T |
|
| Q |
307 |
gtactcctggaaagcaatacacaatcaaacatgacgtaaatggaaatacacatgtttctgatcttacagtagtggatgttcacagtgcgaaagaagtcgc |
406 |
Q |
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|||||||||| ||||||||| ||||||| ||||| | | ||||||||| | ||||||||||||||| || || |||||| | |||| ||||| ||||| |
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| T |
34651469 |
gtactcctgggaagcaatactcaatcaagcatgatgccagtggaaatactcttgtttctgatcttaccgtggtagatgttgagagtgtaaaagaggtcgc |
34651568 |
T |
|
| Q |
407 |
gtttcttttaaatcaagctgcaaatagc |
434 |
Q |
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| T |
34651569 |
atttcttttaaatcaagcggcaaatagc |
34651596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 34651166 - 34651284
Alignment:
| Q |
5 |
acaatgatgggaagacctggacatccagacgaaaaagggttgatacctcgttcattagaacaaatatttcaagcaaaacagtctcagcaacctcaaggct |
104 |
Q |
| |
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||||||||||| || |||||||||| | ||||| || |||||||||||||| ||||||||||||||||| ||| ||||||||| ||||| || |||| |
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| T |
34651166 |
acaatgatgggcaggcctggacatctcggagaaaagggtttgatacctcgttcgctagaacaaatatttcaaacaagacagtctcaacaaccgcagggct |
34651265 |
T |
|
| Q |
105 |
ggaaatacgaaatgcaggt |
123 |
Q |
| |
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||||||| ||||||||||| |
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| T |
34651266 |
ggaaatatgaaatgcaggt |
34651284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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