View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1442-Insertion-4 (Length: 489)
Name: NF1442-Insertion-4
Description: NF1442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1442-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 287
Target Start/End: Complemental strand, 33817884 - 33817608
Alignment:
| Q |
8 |
tatttcactctctaattaagcaaccaatgaagaaaacttgtcatgattacaaaataattttttaaatcaagttttgcgaaataatattttctgaccttat |
107 |
Q |
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| T |
33817884 |
tatttcactctctaattaaacaaccaatgaagaaaacttgtcatgattacaaaataattttttaaatcaagttttgcgaaataatattttctgaccttat |
33817785 |
T |
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| Q |
108 |
gaaatgatacatgattagttggattactacttgcaatccatgacatttatgtttcattgttgcacttagtggttcagggttaatatgtatatttttaaat |
207 |
Q |
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| T |
33817784 |
gaaatgatacatgattagttggatttctacttgcaatccatgacatttatg-ttaattgttgcacttagtggttcagggttaatatgtatatttttaaat |
33817686 |
T |
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| Q |
208 |
gcaaagcagatatgcgtttnnnnnnngtacaggggagtattcaaagtctcaaactcattacaagatggacaacataagac |
287 |
Q |
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| T |
33817685 |
gcaaagcagatatgcgtttaaaaaaagtaca-aggagtattc-aagtctcaaacgcattacaagatggacaacataagac |
33817608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 308 - 489
Target Start/End: Complemental strand, 33817621 - 33817440
Alignment:
| Q |
308 |
ggacaacataagactttgatgagtcgggaccttgtcgaggagcagtttccaagaaaatgcgatatctttttccggattaacactcttccaaaccttagaa |
407 |
Q |
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| T |
33817621 |
ggacaacataagactttgatgagtcggggccttgtcgaggagcagttttcaagaaaatgcgataactttttccggattaacactcttccaaaccttagaa |
33817522 |
T |
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| Q |
408 |
atgatttggagttgatccatcgagaaaggtagatttgccgagaaagtccaataagtcaagttattcgagtaaataccactag |
489 |
Q |
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| T |
33817521 |
atgatttggagttgatccatcgagaaagatagatttgccgagagagtccaataagtcaagttattcgagtaaataccactag |
33817440 |
T |
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