View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1442-Insertion-7 (Length: 980)
Name: NF1442-Insertion-7
Description: NF1442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1442-Insertion-7 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 820; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 820; E-Value: 0
Query Start/End: Original strand, 8 - 975
Target Start/End: Original strand, 21705535 - 21706501
Alignment:
| Q |
8 |
acaagtgctatgcttctttcagaaactaggaaaacttgtaattgagcagtgcattaagattcacatcacatttccacgggaatgtaacttgcagaatctc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21705535 |
acaagtgctatgcttctttcagaaactagaaaaacttgtaattcagcggtgcattaagattcacatcacatttccacgggaatgtaacttgcagaatctc |
21705634 |
T |
|
| Q |
108 |
aagatcctcagcttagtctcatgcaagtctggtgaagtactcttcccgacatctgttgctcaaagtctgcaaaaattagaagatctggaaataggtggat |
207 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||| || |
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|
| T |
21705635 |
aagatcctcatcttattctcatgcaagtctggtgaagtactcttcccgacatctgttgctcaaagtctgcaaaaattagaagagctgcgcatacgtgaat |
21705734 |
T |
|
| Q |
208 |
gtcatgaattgaagcttataattgcggccagtggaagagagcatgatggttgtaacacaagagaggatatagttccagatcaaatgaattctcattttct |
307 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21705735 |
gtcgtgaattgaagcttataattgcggccagtggaagagagcatgatggttgtaacacaagagaggatatagttccagatcaaatgaattctcattttct |
21705834 |
T |
|
| Q |
308 |
catgcctagtctaaggacagttagaatttatgattgtccgttgttaaagtcgatattcccaatcagttatgtggaaggactttcacggctgcaatcgata |
407 |
Q |
| |
|
||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||| |
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|
| T |
21705835 |
catgcctagtctaaggagagttatgattagtgattgtccgttgttaaagtcgatattcccattctgttatgtggaaggactttcacggctacaatcgata |
21705934 |
T |
|
| Q |
408 |
tatataataggcgctcctgagctgaaatatatatttggtgaatgtgatcatgaacatcattcttgtcacaaataccacaaccacatcatgcttcctcaac |
507 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21705935 |
tatataataggcgttcctgagctgaaatatatatttggtgaatgtgatcatgaacatcattcttctcacaaataccacaaccacatcatgcttcctcaac |
21706034 |
T |
|
| Q |
508 |
tgaaagtactcaatctcgaattccttcacaattttattgggatatgtcccgaatactgtcttgcaaagtggccatctcactctttaaaggctcttgttgt |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21706035 |
tgaaagtactcaatctcgaattccttcacaa-tttattgggatatgtcccgaatactgtcttgcaaagtggccatctcactctttaaaggctcttgttgt |
21706133 |
T |
|
| Q |
608 |
gaaggattgtcccaaattggctttgtcatggatctttgtgatgatacgctctgatcatagtcaaaatgaagtatgttctattttgcagaagcataattta |
707 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21706134 |
gaacgattgtcccaaattggctttgtcatggatctttgtgatgatacgctctgatcatagtcaaaatgaagtatgttctattttgcagaagcataattta |
21706233 |
T |
|
| Q |
708 |
tttaatttcccaaatatgctttataatttcatcaacctttttcattttcagaacttgcccctaaaactgtacttggatttatatgatttgcctcagttga |
807 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
21706234 |
tttaatttcccaaatatgctttataatttcatcaacctttttcattttcagaacttgcccctaaaactggacttggaattatatgatttgcctcagttga |
21706333 |
T |
|
| Q |
808 |
actccatatcatggttgggtcctacaactccaagaaagactcagagtctccaatgtctcaagcatttaaaagttatccgttgtgaaaatctgaaatctct |
907 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| |
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|
| T |
21706334 |
actccatatcatggttgggtcctacaactccaagacagactcagagtctccaatgtctcaagcatttacaagttttacgttgtgaaaatctgaaatctct |
21706433 |
T |
|
| Q |
908 |
attctccatggaggaatctagaagtctaccagagttgttgtccatttctattgtcggctgccaagaat |
975 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||| || ||||||||||| |
|
|
| T |
21706434 |
attctccatggaggaatctagaagtctaccagagttgatgtccattgaaattggcgactgccaagaat |
21706501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 298 - 670
Target Start/End: Complemental strand, 21713706 - 21713334
Alignment:
| Q |
298 |
ctcattttctcatgcctagtctaaggacagttagaatttatgattgtccgttgttaaagtcgatattcccaatcagttatgtggaaggactttcacggct |
397 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||| ||||||||| ||||| ||||||||||||| ||| | ||||| ||||||||| || ||| |
|
|
| T |
21713706 |
ctcattttctcatgtctagtctaagggaagttacgattctggattgtccgatgttagagtcgatattccccatctgctatgtcgaaggacttgcagagct |
21713607 |
T |
|
| Q |
398 |
gcaatcgatatatataataggcgctcctgagctgaaatatatatttggtgaatgtgatcatgaacatcattcttgtcacaaataccacaaccacatcatg |
497 |
Q |
| |
|
| || |||| ||||| | | || ||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||| ||||||| |||| |
|
|
| T |
21713606 |
gaaacggatacatatagcaaaaggtcatgagctgaaatatatatttggtgaatgtgatcatgaacatcattcatctcaccaatacctgaaccacaccatg |
21713507 |
T |
|
| Q |
498 |
cttcctcaactgaaagtactcaatctcgaattc-cttcacaattttattgggatatgtcccgaatactgtcttgcaaagtggccatctcactctttaaag |
596 |
Q |
| |
|
||| |||||||| |||| ||||| ||| | ||| ||| ||||| | |||||||| ||||| |||||||||| ||| |||||||||||||||||||| | | |
|
|
| T |
21713506 |
ctttctcaactggaagttctcaaactc-agttctcttgacaatctcattgggatgtgtcctgaatactgtcatgcgaagtggccatctcactctttgagg |
21713408 |
T |
|
| Q |
597 |
gctcttgttgtgaaggattgtcccaaattggctttgtcatggatctttgtgatgatacgctctgatcatagtca |
670 |
Q |
| |
|
| |||||||||| |||||||||||||||||| | |||| |||||| | | ||||| || |||| ||||||||| |
|
|
| T |
21713407 |
gatcttgttgtggaggattgtcccaaattggatatgtcgtggatcgctcttatgattcgttctggtcatagtca |
21713334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 9 - 262
Target Start/End: Complemental strand, 21713971 - 21713718
Alignment:
| Q |
9 |
caagtgctatgcttctttcagaaactaggaaaacttgtaattgagcagtgcattaagattcacatcacatttccacgggaatgtaacttgcagaatctca |
108 |
Q |
| |
|
||||||| |||||||||| | ||||||| | ||||||||||| | || |||| || | | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21713971 |
caagtgcaatgcttctttgataaactagaagaacttgtaatttatcattgcaagaatttacgcatcacatttccacgggaatgtaacttgcagaatctca |
21713872 |
T |
|
| Q |
109 |
agatcctcagcttagtctcatgcaagtctggtgaagtactcttcccgacatctgttgctcaaagtctgcaaaaattagaagatctggaaataggtggatg |
208 |
Q |
| |
|
|||||||||| |||| | ||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||| | ||| ||||| || || |
|
|
| T |
21713871 |
agatcctcagtttagagtattgcaagtctggtgaagtactctttccgaaatctgttgctcaaagtctgcaacaattagaacaactgaaaatacgtaattg |
21713772 |
T |
|
| Q |
209 |
tcatgaattgaagcttataattgcggccagtggaagagagcatgatggttgtaa |
262 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||| | ||||||| |
|
|
| T |
21713771 |
ccatgaattgaagcttataattgctgcaggtggaagagagcatggttgttgtaa |
21713718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 747 - 959
Target Start/End: Complemental strand, 21713191 - 21712979
Alignment:
| Q |
747 |
tttcattttcagaacttgcccctaaaactgtacttggatttatatgatttgcctcagttgaactccatatcatggttgggtcctacaactccaagaaaga |
846 |
Q |
| |
|
|||||| |||||||||||||| |||||||| | ||| ||||| ||| ||||||||||||||| |||||||||||| || ||||||| |||||||| ||| |
|
|
| T |
21713191 |
tttcatgttcagaacttgcccttaaaactggagttgtatttacatgttttgcctcagttgaaatccatatcatggcaggatcctacagctccaagacaga |
21713092 |
T |
|
| Q |
847 |
ctcagagtctccaatgtctcaagcatttaaaagttatccgttgtgaaaatctgaaatctctattctccatggaggaatctagaagtctaccagagttgtt |
946 |
Q |
| |
|
|||||||||||||||| || |||||||||| |||||||||| |||||||| | ||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
21713091 |
tatggagtctccaatgtctccagtatttaaaagtaggtgattgtgaaaatttgaaatctttgttctccatgaaggaatctagaagtctaccagagttgat |
21712992 |
T |
|
| Q |
947 |
gtccatttctatt |
959 |
Q |
| |
|
||||||||||||| |
|
|
| T |
21712991 |
gtccatttctatt |
21712979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 798 - 975
Target Start/End: Original strand, 21709236 - 21709413
Alignment:
| Q |
798 |
cctcagttgaactccatatcatggttgggtcctacaactccaagaaagactcagagtctccaatgtctcaagcatttaaaagttatccgttgtgaaaatc |
897 |
Q |
| |
|
||||| |||||| |||||||||||||||||| || |||||||||| | | || |||||||||||||||| ||| || ||| ||| ||||||||||| |
|
|
| T |
21709236 |
cctcaattgaacgccatatcatggttgggtcttataactccaagacaaattcggagtctccaatgtctccagcgttgaaatgttggtgattgtgaaaatc |
21709335 |
T |
|
| Q |
898 |
tgaaatctctattctccatggaggaatctagaagtctaccagagttgttgtccatttctattgtcggctgccaagaat |
975 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||| | ||||| ||||| |||||||| | ||||||||||| |
|
|
| T |
21709336 |
tgaaatctctattctccgtgaaggaatctagaagtctactaaagttgatgtccctttctatttacaactgccaagaat |
21709413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 305
Target Start/End: Original strand, 21117084 - 21117249
Alignment:
| Q |
140 |
tgaagtactcttcccgacatctgttgctcaaagtctgcaaaaattagaagatctggaaataggtggatgtcatgaattgaagcttataattgcggccagt |
239 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| |||| || ||||| | || |||| |||| || || ||||||||| ||||||||| || ||| |
|
|
| T |
21117084 |
tgaagtactcttctcagcatctgttgctcaaagtttgcagcaactagaacaactaaaaatcagtgggtgctataaattgaagcatataattgctgctagt |
21117183 |
T |
|
| Q |
240 |
ggaagagagcatgatggttgtaacacaagagaggatatagttccagatcaaatgaattctcatttt |
305 |
Q |
| |
|
||||| | |||| |||| |||| ||||| ||||| ||| ||||| || |||||||||||||||| |
|
|
| T |
21117184 |
ggaaggcaacatggtggtagtaatacaagtgaggaaataagtccagctccaatgaattctcatttt |
21117249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 305
Target Start/End: Original strand, 21124582 - 21124676
Alignment:
| Q |
211 |
atgaattgaagcttataattgcggccagtggaagagagcatgatggttgtaacacaagagaggatatagttccagatcaaatgaattctcatttt |
305 |
Q |
| |
|
|||||||||||| ||||||||| || |||||||| | |||| |||| |||| ||||| ||||| ||| ||||| || |||||||||||||||| |
|
|
| T |
21124582 |
atgaattgaagcatataattgctgctagtggaagccaacatggtggtagtaatacaagtgaggaaataagtccagctccaatgaattctcatttt |
21124676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 615 - 671
Target Start/End: Original strand, 21709088 - 21709144
Alignment:
| Q |
615 |
tgtcccaaattggctttgtcatggatctttgtgatgatacgctctgatcatagtcaa |
671 |
Q |
| |
|
||||| || |||||| ||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21709088 |
tgtccaaagttggctatgttatggatcgctgtgatgatacgctctgatcatagtcaa |
21709144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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