View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1442-Insertion-8 (Length: 664)

Name: NF1442-Insertion-8
Description: NF1442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1442-Insertion-8
NF1442-Insertion-8
[»] chr4 (19 HSPs)
chr4 (7-639)||(35329267-35329904)
chr4 (475-605)||(27555586-27555717)
chr4 (475-605)||(30964732-30964862)
chr4 (482-605)||(20464884-20465007)
chr4 (475-605)||(8255322-8255452)
chr4 (475-605)||(8268740-8268870)
chr4 (475-605)||(36689461-36689591)
chr4 (475-605)||(30167219-30167351)
chr4 (468-606)||(2826078-2826213)
chr4 (475-605)||(4306002-4306129)
chr4 (475-606)||(11281381-11281512)
chr4 (475-569)||(7703018-7703111)
chr4 (475-585)||(8705796-8705906)
chr4 (468-565)||(46698428-46698525)
chr4 (475-565)||(49528421-49528511)
chr4 (475-563)||(35341007-35341097)
chr4 (475-566)||(31050317-31050408)
chr4 (475-551)||(9750116-9750191)
chr4 (499-566)||(52868792-52868859)
[»] chr7 (25 HSPs)
chr7 (475-603)||(31971791-31971919)
chr7 (475-605)||(44353220-44353350)
chr7 (475-605)||(5859939-5860069)
chr7 (475-605)||(10244475-10244605)
chr7 (475-605)||(47325541-47325670)
chr7 (475-606)||(41089402-41089530)
chr7 (475-605)||(33434487-33434617)
chr7 (468-605)||(6585181-6585318)
chr7 (468-604)||(42454383-42454519)
chr7 (495-605)||(3867410-3867520)
chr7 (475-605)||(25161104-25161233)
chr7 (507-605)||(38306555-38306653)
chr7 (475-602)||(3419055-3419180)
chr7 (484-602)||(3419323-3419439)
chr7 (475-605)||(37795291-37795421)
chr7 (475-605)||(37795619-37795749)
chr7 (468-605)||(34391477-34391614)
chr7 (475-602)||(43482203-43482329)
chr7 (516-603)||(40726202-40726289)
chr7 (468-587)||(48161690-48161808)
chr7 (475-565)||(11378777-11378866)
chr7 (468-542)||(35745481-35745555)
chr7 (475-530)||(40726147-40726202)
chr7 (486-557)||(31225838-31225910)
chr7 (486-557)||(35401309-35401381)
[»] chr3 (23 HSPs)
chr3 (468-605)||(2392152-2392289)
chr3 (468-605)||(2393915-2394052)
chr3 (468-605)||(47235993-47236130)
chr3 (495-605)||(30352115-30352225)
chr3 (475-605)||(31483175-31483305)
chr3 (475-605)||(45164149-45164278)
chr3 (476-605)||(9583710-9583839)
chr3 (468-601)||(50305223-50305356)
chr3 (475-603)||(19176803-19176931)
chr3 (477-605)||(34475416-34475544)
chr3 (475-605)||(21343643-21343772)
chr3 (475-605)||(40023225-40023355)
chr3 (475-605)||(53248195-53248325)
chr3 (468-605)||(17551252-17551389)
chr3 (498-605)||(43012672-43012779)
chr3 (468-598)||(23327997-23328127)
chr3 (475-586)||(37158618-37158730)
chr3 (468-566)||(45399119-45399217)
chr3 (475-585)||(50559959-50560069)
chr3 (475-565)||(4463741-4463831)
chr3 (475-563)||(25506726-25506814)
chr3 (475-531)||(47439284-47439340)
chr3 (475-561)||(5556918-5557004)
[»] chr8 (23 HSPs)
chr8 (475-605)||(20138721-20138851)
chr8 (475-605)||(12897932-12898062)
chr8 (475-605)||(22773916-22774046)
chr8 (475-605)||(32065941-32066070)
chr8 (468-600)||(24995044-24995176)
chr8 (475-605)||(31207018-31207148)
chr8 (468-605)||(36631118-36631254)
chr8 (475-601)||(9519805-9519931)
chr8 (475-605)||(16457131-16457260)
chr8 (499-605)||(27889141-27889247)
chr8 (499-605)||(27947799-27947905)
chr8 (475-605)||(35815900-35816030)
chr8 (475-605)||(37986511-37986641)
chr8 (468-605)||(15821026-15821162)
chr8 (468-605)||(3584032-3584170)
chr8 (523-605)||(34388711-34388793)
chr8 (475-572)||(35821583-35821679)
chr8 (475-605)||(38577442-38577572)
chr8 (468-561)||(13538324-13538417)
chr8 (468-561)||(13686057-13686150)
chr8 (507-605)||(41893094-41893190)
chr8 (475-528)||(9659474-9659527)
chr8 (500-566)||(10837918-10837984)
[»] chr1 (16 HSPs)
chr1 (475-605)||(30685580-30685710)
chr1 (468-605)||(46814114-46814251)
chr1 (475-600)||(31584696-31584820)
chr1 (475-605)||(24449587-24449716)
chr1 (475-598)||(41920759-41920882)
chr1 (495-605)||(5459455-5459565)
chr1 (475-605)||(6804832-6804962)
chr1 (491-605)||(24684165-24684278)
chr1 (468-605)||(5389077-5389209)
chr1 (468-605)||(40216155-40216292)
chr1 (475-605)||(7002484-7002612)
chr1 (517-603)||(24659227-24659313)
chr1 (519-605)||(46692519-46692606)
chr1 (475-565)||(14320658-14320748)
chr1 (475-563)||(27031497-27031585)
chr1 (219-259)||(29814534-29814573)
[»] chr2 (23 HSPs)
chr2 (477-605)||(387471-387599)
chr2 (475-605)||(39338517-39338647)
chr2 (475-601)||(10524397-10524522)
chr2 (475-605)||(41877208-41877338)
chr2 (468-605)||(5254548-5254684)
chr2 (468-562)||(14436916-14437010)
chr2 (468-602)||(14106172-14106303)
chr2 (468-605)||(14405495-14405630)
chr2 (484-566)||(17116553-17116635)
chr2 (495-605)||(22888568-22888678)
chr2 (468-566)||(7874610-7874709)
chr2 (474-564)||(13512494-13512584)
chr2 (475-563)||(43816103-43816191)
chr2 (475-565)||(3745676-3745766)
chr2 (476-565)||(45311461-45311550)
chr2 (468-566)||(7461010-7461107)
chr2 (475-563)||(43248883-43248971)
chr2 (475-545)||(15457817-15457887)
chr2 (468-551)||(7455601-7455683)
chr2 (468-536)||(25280964-25281032)
chr2 (475-534)||(9823695-9823754)
chr2 (550-601)||(25281030-25281081)
chr2 (536-565)||(15457278-15457307)
[»] chr5 (10 HSPs)
chr5 (475-605)||(18593537-18593667)
chr5 (475-605)||(34378394-34378524)
chr5 (468-605)||(698662-698799)
chr5 (507-605)||(29087773-29087871)
chr5 (474-601)||(5656748-5656875)
chr5 (475-605)||(7161670-7161800)
chr5 (475-575)||(7452913-7453013)
chr5 (475-558)||(18313310-18313393)
chr5 (519-570)||(41250893-41250944)
chr5 (475-561)||(18255106-18255192)
[»] scaffold0434 (1 HSPs)
scaffold0434 (491-605)||(2345-2459)
[»] chr6 (7 HSPs)
chr6 (475-605)||(3254252-3254382)
chr6 (475-605)||(15944294-15944424)
chr6 (475-605)||(3117789-3117919)
chr6 (468-597)||(10542134-10542262)
chr6 (468-552)||(15132489-15132573)
chr6 (511-565)||(33697789-33697843)
chr6 (475-541)||(14663414-14663478)
[»] scaffold0085 (1 HSPs)
scaffold0085 (475-606)||(48629-48760)
[»] scaffold0172 (1 HSPs)
scaffold0172 (475-605)||(19213-19343)
[»] scaffold0343 (1 HSPs)
scaffold0343 (475-605)||(5999-6130)
[»] scaffold0068 (1 HSPs)
scaffold0068 (475-521)||(35480-35526)


Alignment Details
Target: chr4 (Bit Score: 540; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 7 - 639
Target Start/End: Complemental strand, 35329904 - 35329267
Alignment:
Q  7 aaatatcaagcatattaaatgaaattctatctcaaaactcttcaaataagac-----gagtgtttatcccaaaccccccttcaaataagactgagtgtct 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||| |||||||||||||||||||||    
T  35329904 aaatatcaagcatattaaatgaaattctatctcaaaactcttcaaataagacaagacgagtgtttatcccaaaccccc-ttcaaataagactgagtgtct 35329806  T
Q  102 aactatttaatacatcaaatccaacaattagaaaaatttgtaaagagtctcttattagataagacgatgtatgattataagtttataactcggagcaatc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35329805 aactatttaatacatcaaatccaacaattagaaaaatttgtaaagagtctcttattagataaaacgatgtatgattataagtttataactcggagcaatc 35329706  T
Q  202 catgcattgcaaactaattttataatagttgagttagacccaacgtaaattttgagatggtattagatcactgttattgaaaatgctttagatgtctagc 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35329705 catgcattgcaaactaattttataatagttgagttagacccaacgtaaattttgagatggtattagatcactgttattgaaaatgctttagatgtctagc 35329606  T
Q  302 tttaggtgtgaaaaagtgtgttagagtctcacaatggaagagataagttatggacaagagttataaatgcatacaatcttaatcttacaaagtttggtaa 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  35329605 tttaggtgtgaaaaagtgtgttagagtctcacaatggaagagataagttatggacaagagttataaatgcatacaattttaatcttacaaagtttgataa 35329506  T
Q  402 aatctgaattaaatccaacctatattctataagaacatccaacggtatcgaaacctcnnnnnnnnnaatcagaaaatattagtaaacgccatccccgcaa 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||          |||| | |||||||||||||||||||||||||||    
T  35329505 aatctgaattaaatccaacctatattctataagaacatccaacggtatggaaaccttttttttttgaatcggcaaatattagtaaacgccatccccgcaa 35329406  T
Q  502 gacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccatgaagataaacccaccaaaacac 601  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35329405 gacgtaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacctaaaaatacccatgaagataaacccaccaaaacac 35329306  T
Q  602 atcattttgaagaatta-tttaagtttccaaatgacttt 639  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  35329305 atcattttgaagaattattttaagtttccaaatgacttt 35329267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 475 - 605
Target Start/End: Original strand, 27555586 - 27555717
Alignment:
Q  475 aaatattagtaaacgccatcccc-gcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaac 573  Q
    |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  27555586 aaatattattaaacgccatcccccgcaagacgcaaggtatggacgaaacaagatacaaattgtgccgcatatagatggtacaccataaccacctaaaaac 27555685  T
Q  574 acccatgaagataaacccaccaaaacacatca 605  Q
    |||| |||||||||||||||||||||||||||    
T  27555686 acccctgaagataaacccaccaaaacacatca 27555717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 475 - 605
Target Start/End: Complemental strand, 30964862 - 30964732
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| ||||| ||||||| |||||||| |||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||    
T  30964862 aaatattattaaacaccatccctgcaagacgcaaggtatggacgaaacaagatacaaatgatgttgcatatagacggtacaccataaccacctaaaaaca 30964763  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    | | || ||||||||||||||||||||||||    
T  30964762 ctcctggagataaacccaccaaaacacatca 30964732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 482 - 605
Target Start/End: Complemental strand, 20465007 - 20464884
Alignment:
Q  482 agtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccatga 581  Q
    |||||||| ||||| | ||||| | |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  20465007 agtaaacgtcatcctcacaagatgcaaggtatgaaagaaacaagatacaaatggtgccgtatatagacggtacaccataaccacctaaaaacacccctga 20464908  T
Q  582 agataaacccaccaaaacacatca 605  Q
    ||||||||||||||| | ||||||    
T  20464907 agataaacccaccaacatacatca 20464884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 475 - 605
Target Start/End: Complemental strand, 8255452 - 8255322
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| ||||||| ||| ||||||||  |||||| ||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  8255452 aaatattattaaacgctatctccgcaagatataaggtgtggacgagacaagatacaaatgatgccgcatatagacggtacatcataaccacctaaaaaca 8255353  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    | | ||||||||||| ||| |||||||||||    
T  8255352 ctcctgaagataaactcacaaaaacacatca 8255322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 475 - 605
Target Start/End: Complemental strand, 8268870 - 8268740
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| ||||||| ||| ||||||||  |||||| ||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  8268870 aaatattattaaacgctatctccgcaagatataaggtgtggacgagacaagatacaaatgatgccgcatatagacggtacatcataaccacctaaaaaca 8268771  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    | | ||||||||||| ||| |||||||||||    
T  8268770 ctcctgaagataaactcacaaaaacacatca 8268740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 475 - 605
Target Start/End: Original strand, 36689461 - 36689591
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| ||||  ||||| ||||||||||  |||||||||||||| ||||||||||||||  |||||||||||||||||| |||||||| ||||||||    
T  36689461 aaatattattaaataccatctccgcaagacgcgaggtatggacgaaataagatacaaatggtatcgcatatagacggtacactataaccacttaaaaaca 36689560  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||| ||||||||||| |||||||||||||||    
T  36689561 cccctgaagataaactcaccaaaacacatca 36689591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 475 - 605
Target Start/End: Original strand, 30167219 - 30167351
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgc--cgcatatagacggtacaccataaccacctaaaaa 572  Q
    |||||||| |||||| ||||| ||||||||| |||||||||||||||||||||||||||| |||     ||||||||||||||| ||||||| |||||||    
T  30167219 aaatattattaaacgtcatcctcgcaagacgcaaggtatggacgaaacaagatacaaatgatgcaaaaaatatagacggtacactataaccatctaaaaa 30167318  T
Q  573 cacccatgaagataaacccaccaaaacacatca 605  Q
     |||  |||||||||||||||||||||||||||    
T  30167319 taccactgaagataaacccaccaaaacacatca 30167351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 468 - 606
Target Start/End: Complemental strand, 2826213 - 2826078
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 567  Q
    |||||| |||||||| |||||| |||| | |||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||     
T  2826213 aatcagcaaatattattaaacgtcatctctgcaagacgcaaggtatggacggaacaagatacaaatggtgccgcatatatacggtacaccataaccccca 2826114  T
Q  568 aaaaacacccatgaagataaacccaccaaaacacatcat 606  Q
    || || |||| |||||||||  || ||||||||||||||    
T  2826113 aacaaaaccc-tgaagataa--cctccaaaacacatcat 2826078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 475 - 605
Target Start/End: Complemental strand, 4306129 - 4306002
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||| | |||||||| |||||| |||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  4306129 aaatattattaaatgtcatccccggaagacgcaaggtatgaacgaaa-aagatataaatggtgccgcatatagacggtacaccataaccacctaaaaaaa 4306031  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
     ||  || ||||| |||||||||||||||||    
T  4306030 tcc--gaggataatcccaccaaaacacatca 4306002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 475 - 606
Target Start/End: Original strand, 11281381 - 11281512
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| | |||| |||| || ||||||| ||| ||||||||||||| |||| ||||||||| | |||||||||||| ||||||||||||||||||||    
T  11281381 aaatattattgaacgtcatctccacaagacgcaagatatggacgaaacatgatataaatggtgctgtatatagacggtataccataaccacctaaaaaca 11281480  T
Q  575 cccatgaagataaacccaccaaaacacatcat 606  Q
    ||  ||||||||| ||||| ||||||||||||    
T  11281481 cctctgaagataaccccactaaaacacatcat 11281512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 475 - 569
Target Start/End: Complemental strand, 7703111 - 7703018
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaa 569  Q
    |||||||| |||||| ||||||||||||||  |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7703111 aaatattattaaacgtcatccccgcaagacacaaggtatggatgaaa-aagatacaaatggtgccgcatatagacggtacaccataaccacctaa 7703018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 475 - 585
Target Start/End: Original strand, 8705796 - 8705906
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||| ||||||  |||||||  ||||||||||||  || |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8705796 aaatattattaaacgtcatcccttcaagacgcgaggtatggacgaggcaggatacaaatggtgctgcatatagacggtacaccataaccacctaaaaaca 8705895  T
Q  575 cccatgaagat 585  Q
    ||| |||||||    
T  8705896 cccttgaagat 8705906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 468 - 565
Target Start/End: Original strand, 46698428 - 46698525
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 565  Q
    |||||| |||||||| |||||| |||||  | |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46698428 aatcagcaaatattattaaacgtcatccatgaaagacgcaaggtatggtcgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 46698525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 475 - 565
Target Start/End: Complemental strand, 49528511 - 49528421
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 565  Q
    |||||| | ||||| ||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49528511 aaatatcattaaacaccaaccccgcaaaacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccaaaaccac 49528421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 475 - 563
Target Start/End: Original strand, 35341007 - 35341097
Alignment:
Q  475 aaatattagtaaacgccatcccc--gcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 563  Q
    |||||||| |||||| |||||||  |||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35341007 aaatattattaaacgtcatccccccgcaagacgcaatgtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataacc 35341097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 475 - 566
Target Start/End: Original strand, 31050317 - 31050408
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 566  Q
    |||||||| |||||| | ||||||||||| |  | ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  31050317 aaatattattaaacgtcgtccccgcaagatgcgatgtatggacgaaacaagatacaaatgatgtcgcatatagacggtacaccataaccacc 31050408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 475 - 551
Target Start/End: Complemental strand, 9750191 - 9750116
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacgg 551  Q
    |||||||| |||||| ||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||    
T  9750191 aaatattattaaacgtcatccccgcaagacgca-ggtttggacgaaacaagatacaaatggtgccgcatatagacgg 9750116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 499 - 566
Target Start/End: Original strand, 52868792 - 52868859
Alignment:
Q  499 caagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 566  Q
    |||||||||||||||| |||||  ||||||||||||||| ||| ||||||||||||||||||||||||    
T  52868792 caagacgtaaggtatgaacgaattaagatacaaatggtgtcgcgtatagacggtacaccataaccacc 52868859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 3e-59; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 475 - 603
Target Start/End: Original strand, 31971791 - 31971919
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31971791 aaatattattaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 31971890  T
Q  575 cccatgaagataaacccaccaaaacacat 603  Q
    ||| |||||||||||||||||||||||||    
T  31971891 cccctgaagataaacccaccaaaacacat 31971919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 475 - 605
Target Start/End: Original strand, 44353220 - 44353350
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44353220 aaatattattaaacgccatccccgcaagacgcaaagtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacctaaaaaca 44353319  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    |||||| ||||||||||||||||||||||||    
T  44353320 cccatggagataaacccaccaaaacacatca 44353350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 475 - 605
Target Start/End: Original strand, 5859939 - 5860069
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||| ||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5859939 aaatattattaaacgtcatccccgcaagacgcatgatatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 5860038  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||| | ||||||| |||||||||||||||||    
T  5860039 cccctaaagataatcccaccaaaacacatca 5860069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 475 - 605
Target Start/End: Complemental strand, 10244605 - 10244475
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| ||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10244605 aaatattattaaactccatctccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacagtacaccataaccacctaaaaaca 10244506  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||| |||||||||  |||| |||||||||||    
T  10244505 cccctgaagataagtccacgaaaacacatca 10244475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 475 - 605
Target Start/End: Original strand, 47325541 - 47325670
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||| ||||| || |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47325541 aaatattattaaacgtcatcctcgtaagacgcaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacctaaaaaca 47325640  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    | | |||||||||||||||||||||||||||    
T  47325641 ctc-tgaagataaacccaccaaaacacatca 47325670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 475 - 606
Target Start/End: Original strand, 41089402 - 41089530
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||| |||||| | |||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41089402 aaatattattaaatgccatctctgcaagac--aaggtatggacgaaacaagatacaa-tggtgccgcatatagacggtacaccataaccacctaaaaaca 41089498  T
Q  575 cccatgaagataaacccaccaaaacacatcat 606  Q
    |||||||||||||| |||||||||||||||||    
T  41089499 cccatgaagataaatccaccaaaacacatcat 41089530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 475 - 605
Target Start/End: Original strand, 33434487 - 33434617
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||||||||||||||| ||| |||||||||||||| ||||||||||||||| | | |||||||||||||||||||||||||||||||||    
T  33434487 aaatattattaaacgccatccccgcaatacgcaaggtatggacgaagcaagatacaaatggttctgtatatagacggtacaccataaccacctaaaaaca 33434586  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||| || | ||||||||||||||||||||||    
T  33434587 cccctggaaataaacccaccaaaacacatca 33434617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 468 - 605
Target Start/End: Complemental strand, 6585318 - 6585181
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 567  Q
    |||||| |||||||| |||||||||||||||||||| | |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  6585318 aatcagcaaatattattaaacgccatccccgcaagatgcaaggaatggacgaaacaagatacaaatggtgccacatatagacggtacaccataaccacca 6585219  T
Q  568 aaaaacacccatgaagataaacccaccaaaacacatca 605  Q
    || || |||| |||||||||| ||||| ||||||||||    
T  6585218 aacaaaacccctgaagataaagccacctaaacacatca 6585181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 468 - 604
Target Start/End: Original strand, 42454383 - 42454519
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 567  Q
    |||||| |||||||| |||||  ||||||||||||||| ||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  42454383 aatcagcaaatattattaaacatcatccccgcaagacgcaagatatagacgaaacaaggtacaaatggtgccgcatatagacagtacaccataaccacct 42454482  T
Q  568 aaaaacacccatgaagataaacccaccaaaacacatc 604  Q
    ||||| | || ||||||||||||||||||||||||||    
T  42454483 aaaaaaatccttgaagataaacccaccaaaacacatc 42454519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 495 - 605
Target Start/End: Complemental strand, 3867520 - 3867410
Alignment:
Q  495 cccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccatgaagataaacccacc 594  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||| ||||||||||| ||||    
T  3867520 cccgcaagacgtaaggtattgacgaaacaagatacaaatggtgccacatatagacggtacaccataacaacataaaaacacccctgaagataaactcacc 3867421  T
Q  595 aaaacacatca 605  Q
    |||||||||||    
T  3867420 aaaacacatca 3867410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 475 - 605
Target Start/End: Complemental strand, 25161233 - 25161104
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||| |||||||| ||||  ||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  25161233 aaatattattaaacgtcatccccgtaagatttaaggtatgaacgaaacaagatgcaaatggtgccgtatatagacggtacaccataaccacctaaaaaca 25161134  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||| || ||||||||||||||||||||||||    
T  25161133 ccc-tggagataaacccaccaaaacacatca 25161104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 507 - 605
Target Start/End: Complemental strand, 38306653 - 38306555
Alignment:
Q  507 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccatgaagataaacccaccaaaacacatca 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||    
T  38306653 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccctaaagataaaccaaccaaaacacatca 38306555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 475 - 602
Target Start/End: Original strand, 3419055 - 3419180
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||| | ||||||  |||||||||||||||||||||||||||||||    
T  3419055 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaacgttgccgc--atagacggtacaccataaccacctaaaaaca 3419152  T
Q  575 cccatgaagataaacccaccaaaacaca 602  Q
    | | ||||||||||| ||||||||||||    
T  3419153 ctcctgaagataaactcaccaaaacaca 3419180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 484 - 602
Target Start/End: Original strand, 3419323 - 3419439
Alignment:
Q  484 taaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccatgaag 583  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||  |||||||||||||||||||||||||||||||| | |||||    
T  3419323 taaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaacgttgccgc--atagacggtacaccataaccacctaaaaacactcctgaag 3419420  T
Q  584 ataaacccaccaaaacaca 602  Q
    |||||| ||||||||||||    
T  3419421 ataaactcaccaaaacaca 3419439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 475 - 605
Target Start/End: Complemental strand, 37795421 - 37795291
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||| | ||||| ||||||| ||||||||||||||||||||||||||||||| |||   || |||||||||||||||||||||||||||    
T  37795421 aaatattattaaacgtcgtccccacaagacgcaaggtatggacgaaacaagatacaaatggtgtcgcgattaaacggtacaccataaccacctaaaaaca 37795322  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||||||||||||||||||| |||||| ||||    
T  37795321 cccatgaagataaacccacaaaaacatatca 37795291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 475 - 605
Target Start/End: Complemental strand, 37795749 - 37795619
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||| | ||||| ||||||| ||||||||||||||||||||||||||||||| |||   || |||||||||||||||||||||||||||    
T  37795749 aaatattattaaacgtcgtccccacaagacgcaaggtatggacgaaacaagatacaaatggtgtcgcgattaaacggtacaccataaccacctaaaaaca 37795650  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||||||||||||||||||| |||||| ||||    
T  37795649 cccatgaagataaacccacaaaaacatatca 37795619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 468 - 605
Target Start/End: Complemental strand, 34391614 - 34391477
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 567  Q
    |||||| |||||||| |||||| |||||||||| |||| | |||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||     
T  34391614 aatcagcaaatattattaaacgtcatccccgcaggacgcagggtatggacgaaacaagatacaaataatgccgcatatagacgatacaccataaccacca 34391515  T
Q  568 aaaaacacccatgaagataaacccaccaaaacacatca 605  Q
    || ||  ||| |||||||||||||||||||||||||||    
T  34391514 aacaaagcccctgaagataaacccaccaaaacacatca 34391477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 475 - 602
Target Start/End: Complemental strand, 43482329 - 43482203
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||| |||||||| | |||| ||||||||||||||| ||||||||||| |||| ||||| ||||||||||||| |||||||||||||||    
T  43482329 aaatattattaaacgtcatccccgta-gacgcaaggtatggacgaaataagatacaaatagtgctgcatacagacggtacaccacaaccacctaaaaaca 43482231  T
Q  575 cccatgaagataaacccaccaaaacaca 602  Q
     ||||  |||||||||||| ||||||||    
T  43482230 tccattgagataaacccacaaaaacaca 43482203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 516 - 603
Target Start/End: Original strand, 40726202 - 40726289
Alignment:
Q  516 acgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccatgaagataaacccaccaaaacacat 603  Q
    ||||||||| ||||||||| |||  ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  40726202 acgaaacaaaatacaaatgatgctacatatagacggtacaccataaccacctaaaaacacccctggagataaacccaccaaaacacat 40726289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 468 - 587
Target Start/End: Original strand, 48161690 - 48161808
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 567  Q
    |||||| |||||||| |||||| |||||| |||||||  ||| |||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||    
T  48161690 aatcagcaaatattattaaacgtcatccctgcaagacacaagatatggacgaa-caaaatacaaatagtgccgcatatagacggcacaccataaccacct 48161788  T
Q  568 aaaaacacccatgaagataa 587  Q
    || ||  ||| |||||||||    
T  48161789 aacaaagcccctgaagataa 48161808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 475 - 565
Target Start/End: Original strand, 11378777 - 11378866
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 565  Q
    |||||||| ||||||||| |||||||||||| |||||||||||| || |||||||| ||| ||||||||||| ||||||||||||||||||    
T  11378777 aaatattattaaacgccaaccccgcaagacgcaaggtatggacg-aataagatacagatgatgccgcatataaacggtacaccataaccac 11378866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 468 - 542
Target Start/End: Original strand, 35745481 - 35745555
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgca 542  Q
    |||||| |||||||| |||||| |||| ||| || ||| ||||||||||||||||||||||||||||||| ||||    
T  35745481 aatcagcaaatattattaaacgtcatctccgtaaaacgcaaggtatggacgaaacaagatacaaatggtgtcgca 35745555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 475 - 530
Target Start/End: Original strand, 40726147 - 40726202
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagataca 530  Q
    |||||||| |||| | ||||||||||||||| ||||||||||||||||||||||||    
T  40726147 aaatattattaaatgtcatccccgcaagacgcaaggtatggacgaaacaagataca 40726202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 557
Target Start/End: Complemental strand, 31225910 - 31225838
Alignment:
Q  486 aacgccatccccgcaagacgtaaggtatggacgaaacaa-gatacaaatggtgccgcatatagacggtacacc 557  Q
    ||||||| |||||||||||| ||||||||||||| | ||  ||| ||| ||||||  ||||||||||||||||    
T  31225910 aacgccaaccccgcaagacgcaaggtatggacgacataacaatataaaaggtgccatatatagacggtacacc 31225838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 557
Target Start/End: Complemental strand, 35401381 - 35401309
Alignment:
Q  486 aacgccatccccgcaagacgtaaggtatggacgaaac-aagatacaaatggtgccgcatatagacggtacacc 557  Q
    ||||||||||||| |||||| || |||||||||  || |||| ||||  |||||||||||||||||| |||||    
T  35401381 aacgccatccccgtaagacgcaaagtatggacggcacaaagaaacaataggtgccgcatatagacggaacacc 35401309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 2e-57; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 468 - 605
Target Start/End: Original strand, 2392152 - 2392289
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 567  Q
    |||| |||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2392152 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 2392251  T
Q  568 aaaaacacccatgaagataaacccaccaaaacacatca 605  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  2392252 aaaaacacccctgaaaataaacccaccaaaacacatca 2392289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 468 - 605
Target Start/End: Original strand, 2393915 - 2394052
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 567  Q
    |||| |||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2393915 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 2394014  T
Q  568 aaaaacacccatgaagataaacccaccaaaacacatca 605  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  2394015 aaaaacacccctgaaaataaacccaccaaaacacatca 2394052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 468 - 605
Target Start/End: Complemental strand, 47236130 - 47235993
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 567  Q
    |||||| |||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  47236130 aatcagcaaatattattaaacgccatccctgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtataccataaccatct 47236031  T
Q  568 aaaaacacccatgaagataaacccaccaaaacacatca 605  Q
    |||||||||| || ||||||||||||||||| ||||||    
T  47236030 aaaaacacccctggagataaacccaccaaaatacatca 47235993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 495 - 605
Target Start/End: Original strand, 30352115 - 30352225
Alignment:
Q  495 cccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccatgaagataaacccacc 594  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||    
T  30352115 cccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagaaggtacaccataaccacctaaaaacacccctgaagataagcccacc 30352214  T
Q  595 aaaacacatca 605  Q
    |||||||||||    
T  30352215 aaaacacatca 30352225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 475 - 605
Target Start/End: Complemental strand, 31483305 - 31483175
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| ||||| |||||||| ||||||| |||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31483305 aaatattattaaacaccatccccacaagacgcaaggtatgaacaaaacaagatacaaatggtgctgcatatagacggtacaccataaccacctaaaaaca 31483206  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||| || |||||||| |||||||||||||||    
T  31483205 cccctggagataaactcaccaaaacacatca 31483175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 475 - 605
Target Start/End: Complemental strand, 45164278 - 45164149
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||   |||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45164278 aaatattattaaacattatccccgcaagatgcaaggtatggactaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 45164179  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||| || ||||||||||||||||||||||||    
T  45164178 ccc-tggagataaacccaccaaaacacatca 45164149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 476 - 605
Target Start/End: Original strand, 9583710 - 9583839
Alignment:
Q  476 aatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacac 575  Q
    ||||||| ||||||||||| ||| |||||  ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  9583710 aatattattaaacgccatctccgtaagacacaaggtatagacgaaacaagatacaaatggtgccgcatatagacgatacaccataaccacctaaaaatac 9583809  T
Q  576 ccatgaagataaacccaccaaaacacatca 605  Q
    || |||| ||||||||||||||||||||||    
T  9583810 ccttgaaaataaacccaccaaaacacatca 9583839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 468 - 601
Target Start/End: Original strand, 50305223 - 50305356
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 567  Q
    |||||| |||||||| |||||||||| ||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |     
T  50305223 aatcagcaaatattattaaacgccattcccgcaagacgcaaggtatggacggaacaagatacaaatggtgtcgcatatagacggtacaccataaccatca 50305322  T
Q  568 aaaaacacccatgaagataaacccaccaaaacac 601  Q
    || ||  ||| |||||||||||||||||||||||    
T  50305323 aataaagcccctgaagataaacccaccaaaacac 50305356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 475 - 603
Target Start/End: Complemental strand, 19176931 - 19176803
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||| ||| || |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  19176931 aaatattattaaacgtcattcctgcaagacgcaaagtatggacgaaacatgatacaaatggtgccgcatatagacggtacaccataacgacctaaaaata 19176832  T
Q  575 cccatgaagataaacccaccaaaacacat 603  Q
    ||| |||||| ||||||||||||||||||    
T  19176831 cccctgaagacaaacccaccaaaacacat 19176803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 477 - 605
Target Start/End: Original strand, 34475416 - 34475544
Alignment:
Q  477 atattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacc 576  Q
    |||||| |||||| ||||||||||||||| | |||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||    
T  34475416 atattattaaacgtcatccccgcaagacgcagggtatgaacgaaacaagatacaaatggtgccccatatagacggtataccataaccacctaagaacacc 34475515  T
Q  577 catgaagataaacccaccaaaacacatca 605  Q
    | || |||||||| |||||||||||||||    
T  34475516 cctggagataaactcaccaaaacacatca 34475544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 475 - 605
Target Start/End: Complemental strand, 21343772 - 21343643
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||| |||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |       
T  21343772 aaatattattaaacgtcatcccggcaagacacaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacatcataaccacctaacatgg 21343673  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||| ||||||| |||||||||||||||||||    
T  21343672 cccgtgaagat-aacccaccaaaacacatca 21343643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 475 - 605
Target Start/End: Original strand, 40023225 - 40023355
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||  ||||||||||||||| |  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||      
T  40023225 aaatattattaaacatcatccccgcaagacgcattgtatggacgaaacaagatacaaatgatgccgcatatagacggtacaccataaccaccaaacaaag 40023324  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||| |||||||||||||| ||||||||||||    
T  40023325 cccctgaagataaacccatcaaaacacatca 40023355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 475 - 605
Target Start/End: Complemental strand, 53248325 - 53248195
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||| |||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||   |||||||||||||| |||||||||    
T  53248325 aaatattattaaacgtcatccccgcaaggcgtaaggtatggacaaaacaagatacaaatggtgtcgcatataggttgtacaccataaccatctaaaaaca 53248226  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
     || ||||||||| ||||| |||||||||||    
T  53248225 accctgaagataaccccacaaaaacacatca 53248195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 468 - 605
Target Start/End: Complemental strand, 17551389 - 17551252
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 567  Q
    |||||| |||||||| ||||||  ||||| |||||| | | |||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  17551389 aatcagtaaatattattaaacgttatccctgcaagatgcagggtatgaacgaaacaaaatacaaatggtgccgcatatagactgtacaccataaccacct 17551290  T
Q  568 aaaaacacccatgaagataaacccaccaaaacacatca 605  Q
    |||||||||  |||| | ||||||||||||||||||||    
T  17551289 aaaaacacctctgaaaaaaaacccaccaaaacacatca 17551252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 498 - 605
Target Start/End: Complemental strand, 43012779 - 43012672
Alignment:
Q  498 gcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccatgaagataaacccaccaaa 597  Q
    |||||||| |||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||| ||||||||||||    
T  43012779 gcaagacgcaaggtatgaacgaaacaatatacaaatggtgccgcatatagacgatacaccataaccacctaaaaacactcctgaagaaaaacccaccaaa 43012680  T
Q  598 acacatca 605  Q
    | ||||||    
T  43012679 agacatca 43012672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 468 - 598
Target Start/End: Original strand, 23327997 - 23328127
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 567  Q
    |||||| |||||||| ||||||| ||||| |||| ||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||     
T  23327997 aatcagcaaatattattaaacgctatccctgcaatacgcaaggtatggacgaaacaagatataaatggtgccgcatatatacggtacaccataaccacca 23328096  T
Q  568 aaaaacacccatgaagataaacccaccaaaa 598  Q
    || ||  ||| ||| ||||||||||| ||||    
T  23328097 aacaaagcccttgaggataaacccacgaaaa 23328127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 475 - 586
Target Start/End: Complemental strand, 37158730 - 37158618
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatat-agacggt-acaccataaccacctaaaaa 572  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| | | ||| |||| |||||||||||||||    
T  37158730 aaatatta-taaacgccatccccgcaagacgcaaggtatggacgaaacaggatacaaatggtgccgcatataatatggtaacactataaccacctaaaaa 37158632  T
Q  573 cacccatgaagata 586  Q
    ||||| ||||||||    
T  37158631 cacccctgaagata 37158618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 468 - 566
Target Start/End: Complemental strand, 45399217 - 45399119
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 566  Q
    |||||| |||||||| |||||| |||| ||| ||||||  ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45399217 aatcagcaaatattattaaacgacatctccgaaagacgcgaggtatgaacgaaacaagatacaaacggtgccgcatatagacggtacaccataaccacc 45399119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 475 - 585
Target Start/End: Complemental strand, 50560069 - 50559959
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||| ||||| ||||| ||| ||| |||||||||||||||||||||| | ||||||| ||||||||| ||||||||||||| || || |    
T  50560069 aaatattattaaacgtcatcctcgcaatacgcaagatatggacgaaacaagatacaaaagatgccgcacatagacggtgcaccataaccaccaaacaaaa 50559970  T
Q  575 cccatgaagat 585  Q
    |||||||||||    
T  50559969 cccatgaagat 50559959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 475 - 565
Target Start/End: Original strand, 4463741 - 4463831
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 565  Q
    |||||||| |||||| || |||| ||||||| |||  ||||||||||||| | ||||||||||||||||||||||||| ||||||||||||    
T  4463741 aaatattattaaacgtcaaccccacaagacgcaagacatggacgaaacaacacacaaatggtgccgcatatagacggtgcaccataaccac 4463831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 475 - 563
Target Start/End: Original strand, 25506726 - 25506814
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 563  Q
    |||||||| |||||  ||||||||||||||  ||| |||  || |||||| ||||||||||||||||||||||||||||||||||||||    
T  25506726 aaatattattaaacatcatccccgcaagacccaagatataaacaaaacaatatacaaatggtgccgcatatagacggtacaccataacc 25506814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 475 - 531
Target Start/End: Complemental strand, 47439340 - 47439284
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaa 531  Q
    |||||||| |||||| ||||||  |||||| ||||||||||||||||||||||||||    
T  47439340 aaatattactaaacgtcatccctacaagacataaggtatggacgaaacaagatacaa 47439284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 475 - 561
Target Start/End: Complemental strand, 5557004 - 5556918
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa 561  Q
    |||||||| |||||| |||  ||| | || ||||||| || |||||||||||||||||| ||   ||||||||| ||||||||||||    
T  5557004 aaatattattaaacgtcatttccgtaggatgtaaggtttgaacgaaacaagatacaaatagttatgcatatagatggtacaccataa 5556918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 1e-55; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 475 - 605
Target Start/End: Complemental strand, 20138851 - 20138721
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20138851 aaatattattaaacgccatccccgcaagacgcaaagtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacctaaaaaca 20138752  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    |||||| ||||||||||||||||||||||||    
T  20138751 cccatggagataaacccaccaaaacacatca 20138721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 475 - 605
Target Start/End: Original strand, 12897932 - 12898062
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||| ||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12897932 aaatattattaaacgtcatccccgcaagatgcaagatatggacgaaacaagatacaaatggtgccgcatatagacggtacaccattaccacctaaaaaca 12898031  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||| |||||||||||||||||||||||||||    
T  12898032 cccctgaagataaacccaccaaaacacatca 12898062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 475 - 605
Target Start/End: Complemental strand, 22774046 - 22773916
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22774046 aaatattattaaacgccatccccgcaagacgcaaggtatggacgaaactagatacaaatggtgccgcatatagacggtacaccataaccatctaaaaaca 22773947  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||  |||||||||||||||||||||| ||||    
T  22773946 ccagtgaagataaacccaccaaaacatatca 22773916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 475 - 605
Target Start/End: Original strand, 32065941 - 32066070
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| ||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32065941 aaatattattaaacgccatcaccgcaagatgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtaca-cataaccacctaaaaaca 32066039  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||| |||||||||||||||||||||||||||    
T  32066040 cccctgaagataaacccaccaaaacacatca 32066070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 468 - 600
Target Start/End: Original strand, 24995044 - 24995176
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 567  Q
    |||||| |||||||| | ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  24995044 aatcagcaaatattattgaacgccatccccgtaagacgcaaggtatggacgaaacaagatacaaatggtgccgcttatagacagtacaccataaccacct 24995143  T
Q  568 aaaaacacccatgaagataaacccaccaaaaca 600  Q
    |||||||||| ||||||||||||||||||||||    
T  24995144 aaaaacacccctgaagataaacccaccaaaaca 24995176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 475 - 605
Target Start/End: Original strand, 31207018 - 31207148
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  31207018 aaatattattaaacgccatcctcgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgtatataaacggtacaccataaccacctaaaaaca 31207117  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    | | ||||||||||| |||||||||||||||    
T  31207118 ctcctgaagataaactcaccaaaacacatca 31207148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 468 - 605
Target Start/End: Complemental strand, 36631254 - 36631118
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 567  Q
    |||| |||||||||| || |||||||||| |||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36631254 aatcggaaaatattattatacgccatccctgcaagacgcaaggtatgaa-gaaacaagatacaaatggtgccgcatatagacggtacaccataatcacct 36631156  T
Q  568 aaaaacacccatgaagataaacccaccaaaacacatca 605  Q
    |||||||||| |||||||||||||||||||||||||||    
T  36631155 aaaaacacccctgaagataaacccaccaaaacacatca 36631118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 475 - 601
Target Start/End: Complemental strand, 9519931 - 9519805
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| ||||| |||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  9519931 aaatattattaaacaccatccctacaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacagtacatcataaccacctaaaaaca 9519832  T
Q  575 cccatgaagataaacccaccaaaacac 601  Q
    ||| ||| |||||||||||||||||||    
T  9519831 cccctgatgataaacccaccaaaacac 9519805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 475 - 605
Target Start/End: Original strand, 16457131 - 16457260
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  16457131 aaatattattaaacgtcatccctgcaagacgtaaggtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataaccacctaaaaa-a 16457229  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
     || ||| ||||| | |||||||||||||||    
T  16457230 tccttgaggataatcgcaccaaaacacatca 16457260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 499 - 605
Target Start/End: Complemental strand, 27889247 - 27889141
Alignment:
Q  499 caagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccatgaagataaacccaccaaaa 598  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||    
T  27889247 caagacgcaaggtattgacgaaacaagatacaaatggtgccgcatatagactgtacaccataaccacctaaaaacacccctggagataaacccaccaaaa 27889148  T
Q  599 cacatca 605  Q
    |||||||    
T  27889147 cacatca 27889141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 499 - 605
Target Start/End: Complemental strand, 27947905 - 27947799
Alignment:
Q  499 caagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccatgaagataaacccaccaaaa 598  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||    
T  27947905 caagacgcaaggtattgacgaaacaagatacaaatggtgccgcatatagactgtacaccataaccacctaaaaacacccctggagataaacccaccaaaa 27947806  T
Q  599 cacatca 605  Q
    |||||||    
T  27947805 cacatca 27947799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 475 - 605
Target Start/End: Original strand, 35815900 - 35816030
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||      
T  35815900 aaatattattaaacgccatcctcgcaaaacgcaaggtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataacccccaaacaaag 35815999  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||||||||||||||||||||||||| |||||    
T  35816000 cccatgaagataaacccaccaaaacccatca 35816030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 475 - 605
Target Start/End: Original strand, 37986511 - 37986641
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||| | ||||||||||||||| |||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37986511 aaatattattaaatgtcatccccgcaagacgcaaggcacggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacctaaaaaca 37986610  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||| | ||||||||||||  |||||||||||    
T  37986611 cccctaaagataaacccattaaaacacatca 37986641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 468 - 605
Target Start/End: Original strand, 15821026 - 15821162
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 567  Q
    |||||| |||||||| |||||| |||||  |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||     
T  15821026 aatcagcaaatattattaaacgtcatcct-gcaagacgcaaggtatggacggaacaagatacaaatggtgccgcatatagacggtataccataaccacca 15821124  T
Q  568 aaaaacacccatgaagataaacccaccaaaacacatca 605  Q
    || || |||| |||||||||| ||||||||||||||||    
T  15821125 aataaaacccctgaagataaaaccaccaaaacacatca 15821162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 468 - 605
Target Start/End: Complemental strand, 3584170 - 3584032
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaa-gatacaaatggtgccgcatatagacggtacaccataaccacc 566  Q
    |||||| |||||||| |||||||||||||| |||||||  ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3584170 aatcagcaaatattattaaacgccatccccacaagacgcgaggtatgaacgaaacaaagatacaaatggtgccgcatatagacggtacaccataaccacc 3584071  T
Q  567 taaaaacacccatgaagataaacccaccaaaacacatca 605  Q
     || ||  ||| | |||||||||||||||| ||||||||    
T  3584070 aaacaaagccccttaagataaacccaccaacacacatca 3584032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 523 - 605
Target Start/End: Original strand, 34388711 - 34388793
Alignment:
Q  523 aagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccatgaagataaacccaccaaaacacatca 605  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  34388711 aagatacaaatagtgctgcatatagacggtacaccataaccacctaaaaacacccgtgaagataaacccagcaaaacacatca 34388793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 475 - 572
Target Start/End: Complemental strand, 35821679 - 35821583
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaa 572  Q
    |||||||| ||||||||||| |||||||||| |||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||    
T  35821679 aaatattattaaacgccatctccgcaagacgcaagg-atggacgaaacatgatacaaatgatgccgcatatagacggtacaccataaccacttaaaaa 35821583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 475 - 605
Target Start/End: Original strand, 38577442 - 38577572
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||| |||  |||||||| |||| ||||| ||||||||| ||||||||| ||||||||||||||||||||  ||||| ||| || || |    
T  38577442 aaatattattaaacgtcatttccgcaagatgtaatgtatgaacgaaacaatatacaaatgatgccgcatatagacggtacaaaataactaccaaacaaaa 38577541  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
      |||||||||||||||||||||||||||||    
T  38577542 tacatgaagataaacccaccaaaacacatca 38577572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 468 - 561
Target Start/End: Complemental strand, 13538417 - 13538324
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa 561  Q
    |||||| |||||||| ||||||||||| || ||||||| ||||||||||||||| || ||||||||||| |||||||||||||||||| |||||    
T  13538417 aatcagcaaatattattaaacgccatctccacaagacgcaaggtatggacgaaagaatatacaaatggtaccgcatatagacggtacatcataa 13538324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 468 - 561
Target Start/End: Original strand, 13686057 - 13686150
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa 561  Q
    |||||| |||||||| ||||||||||| || ||||||| ||||||||||||||| || ||||||||||| |||||||||||||||||| |||||    
T  13686057 aatcagcaaatattattaaacgccatctccacaagacgcaaggtatggacgaaagaatatacaaatggtaccgcatatagacggtacatcataa 13686150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 507 - 605
Target Start/End: Original strand, 41893094 - 41893190
Alignment:
Q  507 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccatgaagataaacccaccaaaacacatca 605  Q
    |||||||| |||||| || |||||||||||| |||||||||||||||||||||||||||||||||| | ||  || |||||| ||||||||||||||||    
T  41893094 aaggtatgaacgaaaaaa-atacaaatggtgtcgcatatagacggtacaccataaccacctaaaaaaaacc-cgaggataaatccaccaaaacacatca 41893190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 475 - 528
Target Start/End: Complemental strand, 9659527 - 9659474
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagata 528  Q
    |||||||| |||||| ||||||||||||||| ||||||||||||||||||||||    
T  9659527 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagata 9659474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 500 - 566
Target Start/End: Original strand, 10837918 - 10837984
Alignment:
Q  500 aagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 566  Q
    |||||| |||| ||| || ||| ||||| ||||| ||||||||||||||||||||||||||||||||    
T  10837918 aagacgcaaggaatgaacaaaataagatgcaaatcgtgccgcatatagacggtacaccataaccacc 10837984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 1e-55; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 475 - 605
Target Start/End: Original strand, 30685580 - 30685710
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30685580 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacctaaaaaca 30685679  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||| |||||||||||||||||||||||||||    
T  30685680 cccctgaagataaacccaccaaaacacatca 30685710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 468 - 605
Target Start/End: Original strand, 46814114 - 46814251
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 567  Q
    |||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  46814114 aatcagtaaatattattaaacgccatcctcgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacca 46814213  T
Q  568 aaaaacacccatgaagataaacccaccaaaacacatca 605  Q
    || ||  ||| |||||||||||| ||||||||||||||    
T  46814214 aacaaagcccctgaagataaacctaccaaaacacatca 46814251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 475 - 600
Target Start/End: Original strand, 31584696 - 31584820
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| ||||| |||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31584696 aaatattattaaacaccatcctcgcaagacgcaaggtatg-acgaaacaagatacaaatggtgccgcatatagacgatacaccataaccacctaaaaaca 31584794  T
Q  575 cccatgaagataaacccaccaaaaca 600  Q
    ||| ||||||||||||||||||||||    
T  31584795 cccctgaagataaacccaccaaaaca 31584820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 475 - 605
Target Start/End: Original strand, 24449587 - 24449716
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| ||||||||||||| |||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  24449587 aaatattattaaacgccatccc-gcaagatgcaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacataaaaaca 24449685  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||| |  |||||||| |||||||||||||||    
T  24449686 cccctagagataaacacaccaaaacacatca 24449716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 475 - 598
Target Start/End: Complemental strand, 41920882 - 41920759
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||| |||| |||||||||||||||||||||||||| || |||||||| |||| |||||||||||||||||| ||||||||||||||||    
T  41920882 aaatattattaaacgtcatctccgcaagacgtaaggtatggacgaaataaaatacaaattgtgctgcatatagacggtacaccgtaaccacctaaaaaca 41920783  T
Q  575 cccatgaagataaacccaccaaaa 598  Q
    ||| |||||||||||| |||||||    
T  41920782 cccgtgaagataaaccaaccaaaa 41920759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 495 - 605
Target Start/End: Complemental strand, 5459565 - 5459455
Alignment:
Q  495 cccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccatgaagataaacccacc 594  Q
    ||||||| ||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||    
T  5459565 cccgcaatacgcaaggtatggacgaagcaacatacaaatggtgccgcatatagacggtacaccataaccacctaaaaatacccctgaagataaactcacc 5459466  T
Q  595 aaaacacatca 605  Q
    |||||||||||    
T  5459465 aaaacacatca 5459455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 475 - 605
Target Start/End: Complemental strand, 6804962 - 6804832
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| ||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6804962 aaatattattaaacgctatccccgcaagacgcaaggtatggacgaaa-aagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaaa 6804864  T
Q  575 c-ccatgaagataaacccaccaaaacacatca 605  Q
      ||  || ||||| |||||||||||||||||    
T  6804863 aaccccgaggataatcccaccaaaacacatca 6804832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 491 - 605
Target Start/End: Original strand, 24684165 - 24684278
Alignment:
Q  491 catccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccatgaagataaacc 590  Q
    |||||| |||||| | |||||||| || ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  24684165 catccctgcaagatgcaaggtatgaac-aaacaagatacaaatggtgccacatatagacggtacaccataatcacctaaaaacacccctgaagataaacc 24684263  T
Q  591 caccaaaacacatca 605  Q
    |||||||||||||||    
T  24684264 caccaaaacacatca 24684278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 468 - 605
Target Start/End: Original strand, 5389077 - 5389209
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 567  Q
    |||| |||||||||| ||||||||||||||     ||| ||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||    
T  5389077 aatcggaaaatattattaaacgccatcccc-----acgcaaggtatggacgaaataagatacaaatggtgccgcatatagacggcacactataaccacct 5389171  T
Q  568 aaaaacacccatgaagataaacccaccaaaacacatca 605  Q
    |||||||||| |  ||||||||| ||||||||||||||    
T  5389172 aaaaacacccctagagataaaccaaccaaaacacatca 5389209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 468 - 605
Target Start/End: Original strand, 40216155 - 40216292
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 567  Q
    |||||| |||||||| |||||| ||||| |||||||||  || |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  40216155 aatcagcaaatattattaaacgtcatcctcgcaagacgccagatatggacgaatcaagatacaaatggtgccgcatatagacggtacatcataaccacct 40216254  T
Q  568 aaaaacacccatgaagataaacccaccaaaacacatca 605  Q
    ||||||||   || |||| |||||||| ||||||||||    
T  40216255 aaaaacacatctggagattaacccaccgaaacacatca 40216292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 475 - 605
Target Start/End: Complemental strand, 7002612 - 7002484
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||| ||||| ||||| | |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||| |    
T  7002612 aaatattattaaacgtcatcctcgcaaaatgtaaggtatggacgaaacaagatacaaaaggtgccgcatataaacggtacaccataaccacttaaaaa-a 7002514  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||| |  ||||||||||||||||||||||||    
T  7002513 ccc-tagagataaacccaccaaaacacatca 7002484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 517 - 603
Target Start/End: Complemental strand, 24659313 - 24659227
Alignment:
Q  517 cgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccatgaagataaacccaccaaaacacat 603  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||  ||| |||||||||||||||||||||||||    
T  24659313 cgaaacaagatacaaatggtgccgcatatagacggtacaccataaccaccaaacaaagcccctgaagataaacccaccaaaacacat 24659227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 519 - 605
Target Start/End: Original strand, 46692519 - 46692606
Alignment:
Q  519 aaacaagatacaaatggtgccgcatatagacggtacaccataaccacct-aaaaacacccatgaagataaacccaccaaaacacatca 605  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||    
T  46692519 aaacaagataaaaatggtgccgcataaagacggtacaccataaccacctaaaaaacacccctgaagataaaccctccaaaacacatca 46692606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 475 - 565
Target Start/End: Complemental strand, 14320748 - 14320658
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 565  Q
    |||||||| |||||| ||||||| ||||| | ||||||||||| |||| | |||||||||||| |||||||||||||||||||||||||||    
T  14320748 aaatattattaaacgtcatccccacaagatgcaaggtatggacaaaaccaaatacaaatggtgtcgcatatagacggtacaccataaccac 14320658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 475 - 563
Target Start/End: Original strand, 27031497 - 27031585
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 563  Q
    |||||||| |||||| ||||| ||||||||| ||| |||||||| ||||| ||| ||||||||||||||||| ||||||||||||||||    
T  27031497 aaatattattaaacgtcatcctcgcaagacgcaagatatggacggaacaatatataaatggtgccgcatatatacggtacaccataacc 27031585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 29814573 - 29814534
Alignment:
Q  219 ttttataatagttgagttagacccaacgtaaattttgagat 259  Q
    |||||||| |||||||||||||||||| |||||||||||||    
T  29814573 ttttataa-agttgagttagacccaacttaaattttgagat 29814534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 1e-49; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 477 - 605
Target Start/End: Complemental strand, 387599 - 387471
Alignment:
Q  477 atattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacc 576  Q
    |||||| |||||| |||| ||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  387599 atattattaaacgtcatcaccgcaagtcgcagggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacttaaaaacacc 387500  T
Q  577 catgaagataaacccaccaaaacacatca 605  Q
    |||||||||||||||||||||||||||||    
T  387499 catgaagataaacccaccaaaacacatca 387471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 475 - 605
Target Start/End: Original strand, 39338517 - 39338647
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||||||||  || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39338517 aaatattattaaacgccatcatcgtaagacgcaatgtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctgaaaaca 39338616  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||| |||||||||||||||||||||||||||    
T  39338617 cccctgaagataaacccaccaaaacacatca 39338647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 475 - 601
Target Start/End: Complemental strand, 10524522 - 10524397
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| ||||||||| ||| |||||||| |||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  10524522 aaatattattaaacgcca-ccctgcaagacgcaaggtatggacgaaacaatatacaaatggtgcagcatatagatggtacaccataaccacctaaaaaca 10524424  T
Q  575 cccatgaagataaacccaccaaaacac 601  Q
    ||| |||||||||||||||||||||||    
T  10524423 cccctgaagataaacccaccaaaacac 10524397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 475 - 605
Target Start/End: Original strand, 41877208 - 41877338
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| ||||| |||||||||||||||| ||| |||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| ||||||    
T  41877208 aaatattattaaactccatccccgcaagacgcaagatatggacgaaacaatatacaaatggtaccgtatatagacggtacaccataaccacctgaaaaca 41877307  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||| ||||||||||||| | |||||||||||    
T  41877308 cccctgaagataaaccctctaaaacacatca 41877338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 468 - 605
Target Start/End: Complemental strand, 5254684 - 5254548
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 567  Q
    |||||| |||||||| |||||| ||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||     
T  5254684 aatcagcaaatattattaaacgtcatcctcgcaagacgtaaggtatggacgaaata-gatacaaatggtgccgcatatagacggtacaccataacctcca 5254586  T
Q  568 aaaaacacccatgaagataaacccaccaaaacacatca 605  Q
    || ||  | |||||||||||||||||||||||||||||    
T  5254585 aacaaagctcatgaagataaacccaccaaaacacatca 5254548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 468 - 562
Target Start/End: Original strand, 14436916 - 14437010
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataac 562  Q
    |||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14436916 aatcagcaaatattattaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataac 14437010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 468 - 602
Target Start/End: Original strand, 14106172 - 14106303
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 567  Q
    |||||| |||||||| |||||||||||| ||||||||| | |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  14106172 aatcagcaaatattattaaacgccatcctcgcaagacgcagggtatg-acgaaacaagatagaaatggtgccgcatatagacggtacaccataaccacc- 14106269  T
Q  568 aaaaacacccatgaagataaacccaccaaaacaca 602  Q
    ||| |  ||| ||||||| ||||||||||||||||    
T  14106270 aaacaagcccctgaagat-aacccaccaaaacaca 14106303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 468 - 605
Target Start/End: Complemental strand, 14405630 - 14405495
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 567  Q
    |||||| |||||||| ||||||  || || ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  14405630 aatcagcaaatattattaaacgttattcctgcaagacgtaaggtatgaacgaa-caagatacaaatggtgctgcatatagacggtacaccataaccacct 14405532  T
Q  568 aaaaacacccatgaagataaacccaccaaaacacatca 605  Q
    || ||  ||| | ||||| |||| ||||||||||||||    
T  14405531 aacaaagcccctaaagat-aacctaccaaaacacatca 14405495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 484 - 566
Target Start/End: Original strand, 17116553 - 17116635
Alignment:
Q  484 taaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 566  Q
    |||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||    
T  17116553 taaacgtcatccccgcaagacgcaaggtatggacgagacaagatacaaatgatgccgcatatagacggtacactataaccacc 17116635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 495 - 605
Target Start/End: Original strand, 22888568 - 22888678
Alignment:
Q  495 cccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccatgaagataaacccacc 594  Q
    ||||||||||| || ||||||| |||||||| || |||||||||| ||||||||||||| | |||||||| |||| ||||||| ||||||||||||||||    
T  22888568 cccgcaagacgcaatgtatggatgaaacaaggtagaaatggtgccacatatagacggtatatcataaccaactaagaacacccctgaagataaacccacc 22888667  T
Q  595 aaaacacatca 605  Q
    ||||| |||||    
T  22888668 aaaacgcatca 22888678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 468 - 566
Target Start/End: Complemental strand, 7874709 - 7874610
Alignment:
Q  468 aatcagaaaatattagtaaa-cgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 566  Q
    |||||| |||||||| |||| |||||||| ||||||||  ||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7874709 aatcagcaaatattattaaaacgccatcctcgcaagacacaaggtatagacaaaacaagatacaaatggcgccgcatatagacggtacaccataaccacc 7874610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 474 - 564
Target Start/End: Original strand, 13512494 - 13512584
Alignment:
Q  474 aaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacca 564  Q
    ||||||||| |||||| ||| ||||||||||| || ||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||    
T  13512494 aaaatattattaaacgtcattcccgcaagacgcaatgtatggacgaaacaaaatacaaatgatgccgcatatagacggtacaacataacca 13512584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 475 - 563
Target Start/End: Original strand, 43816103 - 43816191
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 563  Q
    |||||||| |||||| ||| ||||||| ||| ||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  43816103 aaatattattaaacgtcattcccgcaaaacgcaaggtatggacgaaacaaagtacaaatgatgccgcatatagacggtacaccataacc 43816191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 475 - 565
Target Start/End: Complemental strand, 3745766 - 3745676
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 565  Q
    |||||||| |||| | |||||||  |||||| |||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||    
T  3745766 aaatattattaaatgtcatccccataagacgcaaggtatggacgaaacaagatacaaatggtgctgcatatagatggtacatcataaccac 3745676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 476 - 565
Target Start/End: Original strand, 45311461 - 45311550
Alignment:
Q  476 aatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 565  Q
    ||||||| ||||||||| |||||||||| | |||| | |||||||||||||||||||||||||| |||||| |||| |||||||||||||    
T  45311461 aatattattaaacgccaaccccgcaagatgcaaggaaaggacgaaacaagatacaaatggtgccacatatatacggaacaccataaccac 45311550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 468 - 566
Target Start/End: Complemental strand, 7461107 - 7461010
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 566  Q
    |||||| |||||||| |||||| ||||||||||||||| |  ||||| ||||||||| ||||||||||||  |||||||||| ||||||||||||||||    
T  7461107 aatcagcaaatattattaaacgtcatccccgcaagacgcagagtatg-acgaaacaaaatacaaatggtgttgcatatagacagtacaccataaccacc 7461010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 475 - 563
Target Start/End: Original strand, 43248883 - 43248971
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 563  Q
    |||||||| |||||| ||||| | ||||||  |||||||||||||||||||||| |||||| ||||||||||||||||| | |||||||    
T  43248883 aaatattattaaacgtcatcctcacaagacacaaggtatggacgaaacaagatataaatggcgccgcatatagacggtatatcataacc 43248971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 475 - 545
Target Start/End: Complemental strand, 15457887 - 15457817
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatat 545  Q
    ||||| || |||||| ||||||||||||||| | | |||||||||||||||||||||||||||||||||||    
T  15457887 aaataatattaaacgtcatccccgcaagacgcatgatatggacgaaacaagatacaaatggtgccgcatat 15457817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 468 - 551
Target Start/End: Complemental strand, 7455683 - 7455601
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacgg 551  Q
    |||||| ||||| || |||||| ||||||||||||||| | |||||| |||||| |||||||||||||||||||| ||||||||    
T  7455683 aatcagtaaataatattaaacgtcatccccgcaagacgca-ggtatgaacgaaataagatacaaatggtgccgcaaatagacgg 7455601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 468 - 536
Target Start/End: Original strand, 25280964 - 25281032
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggt 536  Q
    |||| |||||||||| |||||| ||||||| ||||||| | |||||||||||||||||||| |||||||    
T  25280964 aatcggaaaatattattaaacgtcatccccacaagacgcagggtatggacgaaacaagatataaatggt 25281032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 475 - 534
Target Start/End: Complemental strand, 9823754 - 9823695
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatg 534  Q
    |||||||| ||||||||||| |||||||||  |||||||| | |||||||||||||||||    
T  9823754 aaatattattaaacgccatctccgcaagacacaaggtatgaatgaaacaagatacaaatg 9823695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 550 - 601
Target Start/End: Original strand, 25281030 - 25281081
Alignment:
Q  550 ggtacaccataaccacctaaaaacacccatgaagataaacccaccaaaacac 601  Q
    ||||||||||||||||||||||||||||  ||| ||||||  ||||||||||    
T  25281030 ggtacaccataaccacctaaaaacaccctcgaaaataaactaaccaaaacac 25281081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 565
Target Start/End: Complemental strand, 15457307 - 15457278
Alignment:
Q  536 tgccgcatatagacggtacaccataaccac 565  Q
    ||||||||||||||||||||||||||||||    
T  15457307 tgccgcatatagacggtacaccataaccac 15457278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 2e-48; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 475 - 605
Target Start/End: Complemental strand, 18593667 - 18593537
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||| ||||||||||||| | |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  18593667 aaatattattaaacgtcatccccgcaagatgcaaggtatggacgaaacaagataaatatggtgccgcatatagacggtacaccataaccacctaaaaaca 18593568  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||| ||||||||||||| |||||||||||||    
T  18593567 cccctgaagataaacccgccaaaacacatca 18593537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 475 - 605
Target Start/End: Complemental strand, 34378524 - 34378394
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| ||||||||||| |||||||||| |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34378524 aaatattattaaacgccatctccgcaagacgcaaggcatggacgagacgagatacaaatggtgccgcatatagacggtacaccataaccatctaaaaaca 34378425  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||| ||||||||||||||| |||||||||||    
T  34378424 cccctgaagataaacccacaaaaacacatca 34378394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 468 - 605
Target Start/End: Complemental strand, 698799 - 698662
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 567  Q
    |||||| |||||||| |||||| |||| | ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||| ||||||||||    
T  698799 aatcagcaaatattattaaacgacatctctgcaagacgtaaggtatggatgaaatatgatacaaatggtgccgcatatagacggtacactataaccacct 698700  T
Q  568 aaaaacacccatgaagataaacccaccaaaacacatca 605  Q
    |||||||||| |||||||||||| |||||| |||||||    
T  698699 aaaaacacccttgaagataaacctaccaaaccacatca 698662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 507 - 605
Target Start/End: Complemental strand, 29087871 - 29087773
Alignment:
Q  507 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccatgaagataaacccaccaaaacacatca 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||    
T  29087871 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacatcataaccacctaaaaacaaccctgaagataaacccaccaaaacacatca 29087773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 474 - 601
Target Start/End: Original strand, 5656748 - 5656875
Alignment:
Q  474 aaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaac 573  Q
    ||||||||| ||||||||||| |||||||||| |||||||| |||||| |||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  5656748 aaaatattattaaacgccatcaccgcaagacgcaaggtatgaacgaaataagatacaaatgatgccgcatatagacggtacatgataaccacctaaaaac 5656847  T
Q  574 acccatgaagataaacccaccaaaacac 601  Q
    || | | |||||||| ||||||||||||    
T  5656848 acaccttaagataaatccaccaaaacac 5656875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 475 - 605
Target Start/End: Original strand, 7161670 - 7161800
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||| | ||||| ||||||| ||| ||||||||||| ||||||||||| |||  |||||||||||||||||||||| ||||||||||||    
T  7161670 aaatattattaaacgtcttccccacaagacgcaagatatggacgaaataagatacaaatagtgtagcatatagacggtacaccataatcacctaaaaaca 7161769  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||| |||| ||||||||||||||||||||||    
T  7161770 cccctgaatataaacccaccaaaacacatca 7161800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 475 - 575
Target Start/End: Complemental strand, 7453013 - 7452913
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||  |||||  |||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7453013 aaatattattaaacatcatccatgcaagacgcaaggtatggacaaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 7452914  T
Q  575 c 575  Q
    |    
T  7452913 c 7452913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 475 - 558
Target Start/End: Original strand, 18313310 - 18313393
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacacca 558  Q
    |||||||| |||||| ||| || | |||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  18313310 aaatattattaaacgtcattcctgtaagacgcaaggtatggatgaaacaagatgcaaatggtgccgcatatagacggtacacca 18313393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 519 - 570
Target Start/End: Original strand, 41250893 - 41250944
Alignment:
Q  519 aaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaa 570  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  41250893 aaacaagatataaatggtgccgcatatagacggtacaccataaccacgtaaa 41250944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 475 - 561
Target Start/End: Original strand, 18255106 - 18255192
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa 561  Q
    |||||||  ||||||  ||||||| |||| | | ||||| ||||||||||||||||||| ||||||||||||||||||||| |||||    
T  18255106 aaatattgttaaacgttatccccgtaagatgcagggtatagacgaaacaagatacaaatagtgccgcatatagacggtacatcataa 18255192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 491 - 605
Target Start/End: Original strand, 2345 - 2459
Alignment:
Q  491 catccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccatgaagataaacc 590  Q
    ||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2345 catccccacaagacgcaaggtatggacgaaacaagatacagatggtgccgcatatagacggtacaccataaccacctaaaaacacccttgaagataaacc 2444  T
Q  591 caccaaaacacatca 605  Q
    ||||||| |||||||    
T  2445 caccaaaccacatca 2459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 9e-44; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 475 - 605
Target Start/End: Complemental strand, 3254382 - 3254252
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||  |||||||||| |||||||||||||    
T  3254382 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgtatatagatagtacaccatagccacctaaaaaca 3254283  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||| |||| ||||||||||||||| ||||||    
T  3254282 cccctgaaaataaacccaccaaaatacatca 3254252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 475 - 605
Target Start/End: Complemental strand, 15944424 - 15944294
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| ||||||||||||| | |||||| |||||||||||  || ||||||||||||||| ||||||||||||||||||||||| |||||||||| |    
T  15944424 aaatattattaaacgccatccctgtaagacgcaaggtatggacagaagaagatacaaatggtgtcgcatatagacggtacaccataaacacctaaaaata 15944325  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||| |||| ||||||||||||||||||||||    
T  15944324 cccctgaatataaacccaccaaaacacatca 15944294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 475 - 605
Target Start/End: Complemental strand, 3117919 - 3117789
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||| ||| || |||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  3117919 aaatattattaaacgtcattcctgcaagacgtaaggtatggacgaaataagatacaaatggtgcagcatatagacgctacaccataaccacctaaaaaca 3117820  T
Q  575 cccatgaagataaacccaccaaaacacatca 605  Q
    ||    |||||||||| |||||| |||||||    
T  3117819 cctccaaagataaacctaccaaaccacatca 3117789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 468 - 597
Target Start/End: Complemental strand, 10542262 - 10542134
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 567  Q
    |||| |||||||||| ||| ||||||||| |||||| | ||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  10542262 aatcggaaaatattattaagcgccatccc-gcaagatgcaagatatgaacgaaacaagatacaaaaggtgccgcatatagacgatacaccataaccacct 10542164  T
Q  568 aaaaacacccatgaagataaacccaccaaa 597  Q
    |||||||||| |||||||||||||| ||||    
T  10542163 aaaaacacccctgaagataaacccatcaaa 10542134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 468 - 552
Target Start/End: Original strand, 15132489 - 15132573
Alignment:
Q  468 aatcagaaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggt 552  Q
    |||||| |||||||| |||||||||||  ||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||    
T  15132489 aatcagcaaatattattaaacgccatcatcgcaagacgtaaggtatggacaaaacaagatacaaatgatgccgtatatagacggt 15132573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 511 - 565
Target Start/End: Original strand, 33697789 - 33697843
Alignment:
Q  511 tatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 565  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33697789 tatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 33697843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 475 - 541
Target Start/End: Complemental strand, 14663478 - 14663414
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgc 541  Q
    |||||||| |||||| |||||  |||||||| |||||||||||| ||||||||||||||| ||||||    
T  14663478 aaatattattaaacgtcatcct-gcaagacgaaaggtatggacg-aacaagatacaaatgctgccgc 14663414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 475 - 606
Target Start/End: Complemental strand, 48760 - 48629
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| | |||| | ||||||||||||  ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48760 aaatattattcaacgtcctccccgcaagacacaagatatggactaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 48661  T
Q  575 cccatgaagataaacccaccaaaacacatcat 606  Q
    ||| | ||||||| || |||||||||||||||    
T  48660 cccttaaagataatcctaccaaaacacatcat 48629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 475 - 605
Target Start/End: Complemental strand, 19343 - 19213
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa-ccacctaaaaac 573  Q
    |||||||| |||||| ||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  19343 aaatattattaaacgtcatcctcgcaagacgcatggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacccacctaaaaaa 19244  T
Q  574 acccatgaagataaacccaccaaaacacatca 605  Q
    |  | |||||||||||||||||||| ||||||    
T  19243 aatc-tgaagataaacccaccaaaatacatca 19213  T

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Target: scaffold0343 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 475 - 605
Target Start/End: Complemental strand, 6130 - 5999
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 574  Q
    |||||||| |||||| ||||||||||||||| ||| |||| |||| |||||||||||||||||||| ||||||||| |||| ||||||||||||||||||    
T  6130 aaatattattaaacgtcatccccgcaagacgcaagatatgaacgagacaagatacaaatggtgccgtatatagacgttacatcataaccacctaaaaaca 6031  T
Q  575 cccatgaagataaa-cccaccaaaacacatca 605  Q
    ||  |||||||||| ||||| |||||||||||    
T  6030 cctctgaagataaaccccacaaaaacacatca 5999  T

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Target: scaffold0068 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 475 - 521
Target Start/End: Original strand, 35480 - 35526
Alignment:
Q  475 aaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaa 521  Q
    |||||||| | |||| |||||||| ||||||||||||||||||||||    
T  35480 aaatattattgaacgtcatccccgtaagacgtaaggtatggacgaaa 35526  T

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