View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14420_high_3 (Length: 429)
Name: NF14420_high_3
Description: NF14420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14420_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 34569019 - 34568602
Alignment:
| Q |
1 |
tatctactaacgatgttctcaaactaacaatgaacatcaaactcaggtctttgaagcatctgagcggaatccttatcaacgaagatcaagacaaatttca |
100 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34569019 |
tatctattaacgatgttctcaaactaacaacgaacatcaaactcaggtctttgaagaatctgagcggaatccttatcaacgaagatcaagacaaatttca |
34568920 |
T |
|
| Q |
101 |
agattcatagaccacagatacaagtacttacatatcatctactaacaatgtccttaaactaacaacgaacataaaacccaggtcttcgaagaatctgagc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||| |||||| |||||||| |||| ||||||||||||| |
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| T |
34568919 |
agattcatagaccacagatacaagtacttacatatcatctaataacgatgttcttaaactaacaatgaacatcaaacccagatctttgaagaatctgagc |
34568820 |
T |
|
| Q |
201 |
ggaatccttatcaacttcaccaaactaagttggtaatttgtaagcaaaattagggaactataatagcaacttaatcaaaacatccatctccaaacaacca |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34568819 |
ggaatccttatcaacttcaccaaacaaagttggtaatttgtaagcaaaattagggaactataatagcaacttaatcaaaacatccatctccaaacaacca |
34568720 |
T |
|
| Q |
301 |
ccatataatttccgtgtggatctgtcacagttgtcacaagtagcaacagataaactatgtgaaattaaattaaattaaagcttaaaaggtaaagctttga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34568719 |
ccatataatttccgtgtggatctgtcacagttgtcacaagtagcaacagataaactatgtgaaattaaattaaattaaagcttaaaaggtaaagctttga |
34568620 |
T |
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| Q |
401 |
tttgcttactcaacaaaa |
418 |
Q |
| |
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||||||||| | |||||| |
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| T |
34568619 |
tttgcttacactacaaaa |
34568602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 34569071 - 34568940
Alignment:
| Q |
84 |
gatcaagacaaatttcaagattcatagaccacagatacaagtacttacatatcatctactaacaatgtccttaaactaacaacgaacataaaacccaggt |
183 |
Q |
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|||||||| ||||||||||||||| |||||||| |||||| ||||||||||| ||||| |||| |||| || ||||||||||||||||| |||| ||||| |
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| T |
34569071 |
gatcaagaaaaatttcaagattcagagaccacaaatacaaatacttacatattatctattaacgatgttctcaaactaacaacgaacatcaaactcaggt |
34568972 |
T |
|
| Q |
184 |
cttcgaagaatctgagcggaatccttatcaac |
215 |
Q |
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||| |||||||||||||||||||||||||||| |
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| T |
34568971 |
ctttgaagaatctgagcggaatccttatcaac |
34568940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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