View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14420_low_1 (Length: 636)
Name: NF14420_low_1
Description: NF14420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14420_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 580; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 1 - 596
Target Start/End: Original strand, 39944753 - 39945348
Alignment:
| Q |
1 |
ccaagcatagctaatgaacaacatgaacacaatagatgggacagggttgagagtttctgcaataaatacctgataaaccaaggttattggatagataaaa |
100 |
Q |
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| T |
39944753 |
ccaagcatagctaatgaacaacatgaacacaatagatgggacagggttgagagtttctgcaataaatacctgataaaccaaggttattggatagataaaa |
39944852 |
T |
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| Q |
101 |
agacaagagaacaattaatggtagcagcaactgtgattgcaactatgacttttcagtcagtaattagtccaccgggcggtgtttggcaagaagatacaac |
200 |
Q |
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| T |
39944853 |
agacaagagaacaattaatggtagcagcaactgtgattgcaactatgacttttcagtcagtaattagtccaccgggcggtgtttggcaagaagatacaac |
39944952 |
T |
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| Q |
201 |
aaaaggtggttacgcttgtcctgattatggtttttgtgaagcaggaactgcggttgtaggatatgtttggtcaccagattatcttaaattcattttcttc |
300 |
Q |
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| T |
39944953 |
aaaaggtggttacgcttgtcctgattatggtttttgtgaagcaggaactgcggttgtaggatatgtttggtcaccagattatcttaaattcattttcttc |
39945052 |
T |
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| Q |
301 |
aactctgcttctttctttgcatcactatgtgtgcttttggttctcgtaagcggatttcctcttcataataagtttatagtgtgggtattggcgattttga |
400 |
Q |
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| T |
39945053 |
aactctgcttctttctttgcatcactatgtgtgcttttggttctcgtaagcggatttcctcttcataataagtttatagtgtgggttttggcggttttga |
39945152 |
T |
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| Q |
401 |
tgatagttgcaatcacatgtatgttgcttacatacatgtgggcgttgggattagttagtcctaatcacattttctatagaattcgtgatttaggttttat |
500 |
Q |
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| T |
39945153 |
tgatagttgcaatcacatgtatgttgcttacatacatgtgggcgttgggattagttagtcctaatcacattttctatagaattcgtgatttaggttttat |
39945252 |
T |
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| Q |
501 |
cttggttggaatttggtctttcttactttttgttgtttgtttgattcaaatagctagaattgtgttttgggttaggtctagatgcaggtcctcgtc |
596 |
Q |
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| T |
39945253 |
cttggttggaatttggtctttcttactttttgttgtttgtttgattcaaatagctagaattgtgttttgggttaggtctaaacgcaggtcctcgtc |
39945348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 78 - 199
Target Start/End: Original strand, 39949175 - 39949296
Alignment:
| Q |
78 |
ccaaggttattggatagataaaaagacaagagaacaattaatggtagcagcaactgtgattgcaactatgacttttcagtcagtaattagtccaccgggc |
177 |
Q |
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| T |
39949175 |
ccaaggtaattggattgataaaaagacaaaagaacaatccatggtagcagcaactgtaatcgcaacaatgacatttcaatcagtaataagtccaccaggc |
39949274 |
T |
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| Q |
178 |
ggtgtttggcaagaagatacaa |
199 |
Q |
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| T |
39949275 |
ggtgtttggcaagaagatacaa |
39949296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 359
Target Start/End: Original strand, 39954117 - 39954178
Alignment:
| Q |
298 |
ttcaactctgcttctttctttgcatcactatgtgtgcttttggttctcgtaagcggatttcc |
359 |
Q |
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| T |
39954117 |
ttcaactctgcatctttctttgcttctctatgtgtggtgttggttctcatcagtggatttcc |
39954178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 485
Target Start/End: Original strand, 39954219 - 39954304
Alignment:
| Q |
400 |
atgatagttgcaatcacatgtatgttgcttacatacatgtgggcgttgggattagttagtcctaatcacattttctatagaattcg |
485 |
Q |
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| T |
39954219 |
atgataattgctgtcacattcatgttgctcacatacatgtgggcacttggattgattagtcctaatcatgtttgctatagaattcg |
39954304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 29671593 - 29671522
Alignment:
| Q |
127 |
gcaactgtgattgcaactatgacttttcagtcagtaattagtccaccgggcggtgtttggcaagaagataca |
198 |
Q |
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| T |
29671593 |
gcaactgtaattgccacaatgacttttcaatccgcaataagtccaccaggtggtgtttggcaagaaaataca |
29671522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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