View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14420_low_11 (Length: 221)
Name: NF14420_low_11
Description: NF14420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14420_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 43563850 - 43564040
Alignment:
| Q |
16 |
tactattaaggtgtgttgttcctggtctcacaccaccccaataaccacaaagtgcatgccaaacataaacatcatccaaacctttgaacttagtcctcaa |
115 |
Q |
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| T |
43563850 |
tactattaaggtgtgttgttcctggtctcacaccaccccaataaccacaaagtgcatgccaaacataaacatcatctaaacctttgaacttagtcctcaa |
43563949 |
T |
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| Q |
116 |
atcccttgtgaaagccttcaaaccatactccnnnnnnnctttacaacaaaatcttccacactcacttttttgaacaatactactttgttct |
206 |
Q |
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| T |
43563950 |
atcccttgtgaaagccttcaaaccatactcctttttttctttacaacaaaatcttccacactcacttttttgaacaatactactttgttct |
43564040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 36431836 - 36431955
Alignment:
| Q |
23 |
aaggtgtgttgttcctggtctcacaccaccccaataaccacaaagtgcatgccaaacataaacatcatccaaacctttgaacttagtcctcaaatccctt |
122 |
Q |
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| T |
36431836 |
aaggtgtgtggctccaggtctcacaccaccccaagcaccacaaagtgcatgccaaacataaacatcatccaaacctttgaacttagtcctcaaatccctt |
36431935 |
T |
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| Q |
123 |
gtgaaagccttcaaaccata |
142 |
Q |
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| T |
36431936 |
gtgaaagccttcaatccata |
36431955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 43974721 - 43974595
Alignment:
| Q |
20 |
attaaggtgtgttgttcctggtctcacaccaccccaataaccacaaagtgcatgccaaacataaacatcatccaaacctttgaacttagtcctcaaatcc |
119 |
Q |
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| T |
43974721 |
attaaggtgtgtggtttctggcctcacaccaccccaagcaccacaaagtgcatgccaaacataaatatcatccaaacctttgaacttagtcctaaggtcc |
43974622 |
T |
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| Q |
120 |
cttgtgaaagccttcaaaccatactcc |
146 |
Q |
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| T |
43974621 |
cttgtgaaagccttcaatccatactcc |
43974595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 34698217 - 34698265
Alignment:
| Q |
39 |
ggtctcacaccaccccaataaccacaaagtgcatgccaaacataaacat |
87 |
Q |
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||||| || ||||||||||| |||||||||||||||||||||||||||| |
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| T |
34698217 |
ggtctaaccccaccccaatacccacaaagtgcatgccaaacataaacat |
34698265 |
T |
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