View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14420_low_2 (Length: 571)
Name: NF14420_low_2
Description: NF14420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14420_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 13 - 571
Target Start/End: Complemental strand, 54202780 - 54202199
Alignment:
| Q |
13 |
tcatcagtagcggaagtgctctttatttgagagtaagtgtaatttggattgctgccatatggagcgtttggaaatcaagaaatgataagctgtttaaaaa |
112 |
Q |
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| T |
54202780 |
tcattagtagcggaagtgcgctttatttgagagtaagtgtaatttggattgctgccatatggagcgtttggaaatcaagaaatgataagctgtttaaaaa |
54202681 |
T |
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| Q |
113 |
caaagat--------------------tgaagaagtaaaaaggt-cccttggaacgggctgaagtacaaatcaaatagcatggattgtgacattgttcaa |
191 |
Q |
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| T |
54202680 |
caaagatattagtatggatcaaatgattgaagaagtaaaaaggttcccttggaacgggctgaagtacaaataaaatagcatggattgcgacattgttcaa |
54202581 |
T |
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| Q |
192 |
tagtacttgaatcctagagcatgccttggatgtgtgggttaatgccttgtgctttgctaaaattggatgtgtggattaatcttagcttaaaagaatatgc |
291 |
Q |
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| T |
54202580 |
tagtacttgaatcctagagcatgccttggatgtgtgggttaatgccttgtactttgctaaaattggatgtgtggattaatcttagcttaaaagaatatgc |
54202481 |
T |
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| Q |
292 |
acatattttaaaagaaaaaactaagaagtgtttgatgttgtctacggcgtgaacatt---catacttgtaacaagataataattatttatgttgaaagtt |
388 |
Q |
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| T |
54202480 |
acatattttaaaagaaaaaactaagaagtgtttgatgttgtctacggcgtgaacattattcatacttgtaaca-gatattaattatttgtgttgaaagtt |
54202382 |
T |
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| Q |
389 |
gacacacagccacacaagttggtcaaaaaattaggccattgttacttgttaaggcttatcaaatgagaagtcaatattatgattttgttgattgttccct |
488 |
Q |
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| T |
54202381 |
gacacacagccacacaagttggtcaaaaaattaggccattgttacttgttaaggcttatcaaatgagaagtcaatattatgattttgttgattgttccct |
54202282 |
T |
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| Q |
489 |
gcaggatggtgttgaggtggtgacataatttgattcaaatttaattggtgtgtagatccttctgtgtctgaaaaatcagtttc |
571 |
Q |
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| T |
54202281 |
gcaggatggtgttgaggtggtgacataatttgattcaaatttaattggtgtgtagatccttctgtgtctgaaaaatcagtttc |
54202199 |
T |
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Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 16718889 - 16718974
Alignment:
| Q |
30 |
gctctttatttgagagtaagtgtaatttggattgctgccatatggagcgtttggaaatcaagaaatgataagctgtttaaaaacaa |
115 |
Q |
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| T |
16718889 |
gctctctatttgagagttagtgtcatttggtttgctggcatatggagcatttgaaaatcaagaaatgataagctgcttaaaaacaa |
16718974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 30553480 - 30553444
Alignment:
| Q |
79 |
tttggaaatcaagaaatgataagctgtttaaaaacaa |
115 |
Q |
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| T |
30553480 |
tttgaaaatcaagaaatgataagttgtttaaaaacaa |
30553444 |
T |
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