View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14420_low_3 (Length: 539)
Name: NF14420_low_3
Description: NF14420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14420_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 256 - 525
Target Start/End: Original strand, 1429819 - 1430088
Alignment:
| Q |
256 |
taataactatgaaattctagatttattttgagaatacaatatcttcagtctagagatccatttcctaagagcattgaccaacgctgcaattatgatggcc |
355 |
Q |
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| T |
1429819 |
taataactatgaacttctggatttattttgagaatacaatatcttcagtctagagatccatttcctaagagcattgaccaacgctgcaattatgatggcc |
1429918 |
T |
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| Q |
356 |
caaagaatccatnnnnnnngactaccttctacaagtggagttaaacttgataacataattatgaatatgatcccaaagatgctggtttgaaaagggtgca |
455 |
Q |
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| T |
1429919 |
caaagaatccataaaaaaagactaccttctacaagtggagttaaacttgataacataattatgaatatgatcccaaagatgctggtttgaaaagggtgca |
1430018 |
T |
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| Q |
456 |
ttgtcgtgatagaaaatagctttatttgaataaaggtaacaagatagacgatcgagtgcatgagaatatt |
525 |
Q |
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| T |
1430019 |
ttgtcgtgatagaaaatagctttatttgaataaaggtaacaagatagacgatcgactgcatgagaatatt |
1430088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 1429555 - 1429792
Alignment:
| Q |
20 |
acttgatcatcgatgtgttttgtagttgatttactttatgatactcaaatcgtcaaattccaaccaatacaaagcaggattatatagaataggaccgata |
119 |
Q |
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| T |
1429555 |
acttgatcatagatgtgttttgtagttgatttactttatgatactcaaatcgtcaaattcaaaccaaaacaaagaaggattatatagaaaaggaccgata |
1429654 |
T |
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| Q |
120 |
acaagaaaataaactataaaaaacaatccatgcaataactttgacgagacaataaatccgcacaatcaatcaatctttattgagagatcaatgaaattcc |
219 |
Q |
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| T |
1429655 |
acaagaaaataaactaaaaaaaacaatccatgcaataactttgacgagacaataaatccgcacaatcaa--aatctttattgagagatcaatgaaattcc |
1429752 |
T |
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| Q |
220 |
aaactatacataaagtttgtccattatacatactattaat |
259 |
Q |
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| T |
1429753 |
aaactatacataaagtttgtccattatacatactattaat |
1429792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 409 - 511
Target Start/End: Complemental strand, 1463098 - 1462996
Alignment:
| Q |
409 |
cataattatgaatatgatcccaaagatgctggtttgaaaagggtgcattgtcgtgatagaaaatagctttatttgaataaaggtaacaagatagacgatc |
508 |
Q |
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|||||||||||||||||||||||||||| || ||| ||||| ||| |||||| |||||||||| || || ||||| | ||||||||| | ||| |||| |
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| T |
1463098 |
cataattatgaatatgatcccaaagatgatgcttttaaaagagtgtcttgtcgcaatagaaaataactctagttgaaaataggtaacaataaagaagatc |
1462999 |
T |
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| Q |
509 |
gag |
511 |
Q |
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| T |
1462998 |
gag |
1462996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 1453922 - 1453970
Alignment:
| Q |
20 |
acttgatcatcgatgtgttttgtagttgatttactttatgatactcaaa |
68 |
Q |
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| T |
1453922 |
acttgattatagatgtgttttgtagttgattttcattatgatactcaaa |
1453970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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