View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14420_low_6 (Length: 305)
Name: NF14420_low_6
Description: NF14420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14420_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 22625538 - 22625793
Alignment:
| Q |
13 |
aatatttagagtgacgtatataaatccttaaagatatacaatgttgattgtagcagttccnnnnnnnnnnnnnngagtgatggttgtagtatagtataga |
112 |
Q |
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| T |
22625538 |
aatatttagagagacgtatataaatccttaaagatatacaatgttgattgtagcagttccttttttttttttttgagtgatgattgtagtatagtataga |
22625637 |
T |
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| Q |
113 |
aggatttagcctttactaggactagattagtgatgaaaaaatcgggattcataaccagttttccaagcattgcaatataataagcttaatccatgcatcc |
212 |
Q |
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| T |
22625638 |
agtatttagctttgactagtactagattagtgatgaaaatatcgggattcataaccagttttccaagcattgccatataataagcttaatccatgcatcc |
22625737 |
T |
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| Q |
213 |
aaagactttgggtcaactgagtaacgttagtcgaaaatgctagctagtaccacgcg |
268 |
Q |
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| T |
22625738 |
aaagactttgggtcaactgagtaacgttagtcgaaaatgctagctagtaccacgcg |
22625793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 249
Target Start/End: Original strand, 22622184 - 22622328
Alignment:
| Q |
104 |
tagtatagaaggatttagcctttactaggactagattagtgatgaaaaaatcgggattcataaccagttttccaagcattgcaatataataagcttaatc |
203 |
Q |
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| T |
22622184 |
tagtatagaagtatttagctttgactagtacaagtatagtgatgaaaaaat-gggattcataacaagttttccaagcattgccatgtaaaaagcttaatc |
22622282 |
T |
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| Q |
204 |
catgcatccaaagactttgggtcaactgagtaacgttagtcgaaaa |
249 |
Q |
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| T |
22622283 |
catgcgaccaaagactttgggtcaactgagtaacggtagtcaaaaa |
22622328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 22622098 - 22622135
Alignment:
| Q |
15 |
tatttagagtgacgtatataaatccttaaagatataca |
52 |
Q |
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| T |
22622098 |
tatttagagagacgtatattaatccttaaagatataca |
22622135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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