View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14420_low_8 (Length: 276)
Name: NF14420_low_8
Description: NF14420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14420_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 33588302 - 33588071
Alignment:
| Q |
20 |
gaaggcaccaattgtcatcacggctgcaggcaccagtgctagtccaagagagagtcgccagccccatgtgtgcttggcagtcgcgtaatttatgcaacct |
119 |
Q |
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| T |
33588302 |
gaaggcaccaattgtcatcacggcttcaggcaccactgctagtccaagagagagtcgccagccccatgtttgcttggcagtcgcgtaatttatgcaacc- |
33588204 |
T |
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| Q |
120 |
gcagcaaccacgccaactcctaagaagaattggaagcctgtgctgaaagcacctcgccattttggtggagcgatttcagaaaggtatagtggagtcgcct |
219 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
33588203 |
---------acgccaactcctaagaagagttggaagcctgtgctgaaagcacctcaccattttggtggagcaatttcagaaaggtatagtggagccgcct |
33588113 |
T |
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| Q |
220 |
tttccaattgcatcatgtaatacaattagcaagcaaatttat |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
33588112 |
tttccaattgcatcatgtaatacaattagcaagcaaatttat |
33588071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 33595474 - 33595243
Alignment:
| Q |
20 |
gaaggcaccaattgtcatcacggctgcaggcaccagtgctagtccaagagagagtcgccagccccatgtgtgcttggcagtcgcgtaatttatgcaacct |
119 |
Q |
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||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33595474 |
gaaggcaccaattgtcatcacggctccaggcaccactgctagtccaagagagagtcgccagccccatgtttgcttggcagtcgcgtaatttatgcaacc- |
33595376 |
T |
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| Q |
120 |
gcagcaaccacgccaactcctaagaagaattggaagcctgtgctgaaagcacctcgccattttggtggagcgatttcagaaaggtatagtggagtcgcct |
219 |
Q |
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| T |
33595375 |
---------acgccaactcctaagaagagttggaagcctgtgctgaaagcacctcaccattttggtggagcaatttcagaaaggtatagtggagccgcct |
33595285 |
T |
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| Q |
220 |
tttccaattgcatcatgtaatacaattagcaagcaaatttat |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
33595284 |
tttccaattgcatcatgtaatacaattagcaagcaaatttat |
33595243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 33602605 - 33602374
Alignment:
| Q |
20 |
gaaggcaccaattgtcatcacggctgcaggcaccagtgctagtccaagagagagtcgccagccccatgtgtgcttggcagtcgcgtaatttatgcaacct |
119 |
Q |
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||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33602605 |
gaaggcaccaattgtcatcacggctccaggcaccactgctagtccaagagagagtcgccagccccatgtttgcttggcagtcgcgtaatttatgcaacc- |
33602507 |
T |
|
| Q |
120 |
gcagcaaccacgccaactcctaagaagaattggaagcctgtgctgaaagcacctcgccattttggtggagcgatttcagaaaggtatagtggagtcgcct |
219 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
33602506 |
---------acgccaactcctaagaagagttggaagcctgtgctgaaagcacctcaccattttggtggagcaatttcagaaaggtatagtggagccgcct |
33602416 |
T |
|
| Q |
220 |
tttccaattgcatcatgtaatacaattagcaagcaaatttat |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
33602415 |
tttccaattgcatcatgtaatacaattagcaagcaaatttat |
33602374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 33627408 - 33627191
Alignment:
| Q |
20 |
gaaggcaccaattgtcatcacggctgcaggcaccagtgctagtccaagagagagtcgccagccccatgtgtgcttggcagtcgcgtaatttatgcaacct |
119 |
Q |
| |
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||||||||||||||| || || ||||||||||| | ||| |||||||||||||||| ||| |||||||| ||||||||||| | || |||||||||||| |
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| T |
33627408 |
gaaggcaccaattgtaattacagctgcaggcacaactgcaagtccaagagagagtctccatccccatgtatgcttggcagtgccatagtttatgcaacct |
33627309 |
T |
|
| Q |
120 |
gcagcaaccacgccaactcctaagaagaattggaagcctgtgctgaaagcacctcgccattttggtggagcgatttcagaaaggtatagtggagtcgcct |
219 |
Q |
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||| | | | |||| |||||| |||||| | |||| |||||| ||||| |||||||||||||||||||| |||||||| ||||| | ||| | |||| |
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| T |
33627308 |
gcaacgattataccaaatcctaaaaagaatggaaagcttgtgctcaaagcgcctcgccattttggtggagcaatttcagataggtacaatggtgcagcct |
33627209 |
T |
|
| Q |
220 |
tttccaattgcatcatgt |
237 |
Q |
| |
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|||||||||||| ||||| |
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| T |
33627208 |
tttccaattgcaacatgt |
33627191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 33618193 - 33618008
Alignment:
| Q |
20 |
gaaggcaccaattgtcatcacggctgcaggcaccagtgctagtccaagagagagtcgccagccccatgtgtgcttggcagtcgcgtaatttatgcaacct |
119 |
Q |
| |
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||||| ||| ||||||||||| |||||||| |||| ||| |||||||||||||||| ||| ||||||||||||||||| || ||||| |||||||| || |
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| T |
33618193 |
gaaggaaccgattgtcatcacagctgcaggaaccactgcaagtccaagagagagtctccatccccatgtgtgcttggccgtggcgtagtttatgcagccg |
33618094 |
T |
|
| Q |
120 |
gcagcaaccacgccaactcctaagaagaattggaagcctgtgctgaaagcacctcgccattttggtggagcgatttcagaaaggta |
205 |
Q |
| |
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||||| || || |||| ||| |||||||| || ||||| ||| | |||| |||||||||||||| ||||| ||||||| ||||| |
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| T |
33618093 |
gcagcgactacaccaattcccaagaagaactgaaagcccgtgttaaaagtgcctcgccattttgggggagcagtttcagataggta |
33618008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 33609018 - 33608839
Alignment:
| Q |
20 |
gaaggcaccaattgtcatcacggctgcaggcaccagtgctagtccaagagagagtcgccagccccatgtgtgcttggcagtcgcgtaatttatgcaacct |
119 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||| ||| |||||||| || |||| ||| ||||||||||||| || || | || |||||||| ||| |
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| T |
33609018 |
gaaggaaccaattgtcatcactattgcaggaaccactgcaagtccaagcgaaagtctccatccccatgtgtgctcagcggtgccatagtttatgcagcct |
33608919 |
T |
|
| Q |
120 |
gcagcaaccacgccaactcctaagaagaattggaagcctgtgctgaaagcacctcgccattttggtggagcgatttcaga |
199 |
Q |
| |
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|||| || || |||||||| || |||||||| ||||| || || ||||| |||||||||||||| ||||| |||||||| |
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| T |
33608918 |
gcagtgactacaccaactcccaaaaagaattgaaagccggtactaaaagcgcctcgccattttgggggagcaatttcaga |
33608839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 33622407 - 33622230
Alignment:
| Q |
22 |
aggcaccaattgtcatcacggctgcaggcaccagtgctagtccaagagagagtcgccagccccatgtgtgcttggcagtcgcgtaatttatgcaacctgc |
121 |
Q |
| |
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|||| ||||||||||| || | |||| |||||| ||| |||||||||||||||| ||| |||||||| ||| || | | ||||||||| |||| |
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| T |
33622407 |
aggcgccaattgtcattacagatgcaagcaccactgcaagtccaagagagagtctcca------tgtgtgctcggcggtgccattgtttatgcaatctgc |
33622314 |
T |
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| Q |
122 |
agcaaccacgccaactcctaagaagaattggaagcctgtgctgaaagcacctcgccattttggtggagcgatttcagaaaggta |
205 |
Q |
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||| | | |||| |||||| |||||| | ||||||||||| ||||| |||||||||||||||| ||| |||||||| ||||| |
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| T |
33622313 |
agcgattataccaagtcctaaaaagaatggaaagcctgtgctcaaagcgcctcgccattttggtgaagcaatttcagataggta |
33622230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Complemental strand, 33562649 - 33562615
Alignment:
| Q |
171 |
cctcgccattttggtggagcgatttcagaaaggta |
205 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| |
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| T |
33562649 |
cctcgccattttggtggagcgatttccgaaaggta |
33562615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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