View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14421_high_12 (Length: 384)
Name: NF14421_high_12
Description: NF14421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14421_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 369
Target Start/End: Original strand, 2091439 - 2091797
Alignment:
| Q |
11 |
cacagagcagagtaagatatgataatgaagctactacagtttcctaatagaatgagagctggnnnnnnnncacaaatacagaaatactaataccatattg |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2091439 |
cacaaagcagagtaagatatgataatgaagctactacagtttcctaatagaatgagagctggaaaaaaaacacaaatacagaaatactaataccatattg |
2091538 |
T |
|
| Q |
111 |
atcatgattctttaaaatatccattgaaccttcatacacgtcacaaaagatgatattggcatcagggagctcctcagcaagcttttcaacaatgtatctc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2091539 |
atcatgattctttaaaatatccattgaaccttcatacacgtcacagaagatgatattggcatcagggagctcctcagcaagcttttcaacaatgtatctc |
2091638 |
T |
|
| Q |
211 |
atgagaaagttaaactcaatggccatgtcatttatcggttcaacacattctccattctgaataccgtactcccacatatagcgaggggcacaaccaatag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2091639 |
atgagaaagttaaactcaatggccatgtcatttatcggttcaacacattctccattctgaataccgtactcccacatatagcgaggggcacaaccaatag |
2091738 |
T |
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| Q |
311 |
gggcaagtcccatgaccaccattttcctaacatttaagttgtacaagttctgcatcatc |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2091739 |
gggcaagtcccatgaccaccattttcctaacatttaagttgtacaagttctgtatcatc |
2091797 |
T |
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