View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14421_high_21 (Length: 300)

Name: NF14421_high_21
Description: NF14421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14421_high_21
NF14421_high_21
[»] chr2 (4 HSPs)
chr2 (21-280)||(11482935-11483192)
chr2 (203-280)||(8263284-8263361)
chr2 (219-258)||(27640702-27640741)
chr2 (21-142)||(11576887-11577007)
[»] chr4 (1 HSPs)
chr4 (219-280)||(49130287-49130348)
[»] chr1 (6 HSPs)
chr1 (216-275)||(27324619-27324678)
chr1 (203-280)||(43060284-43060361)
chr1 (216-258)||(42225374-42225416)
chr1 (206-280)||(12882868-12882942)
chr1 (203-280)||(15842039-15842114)
chr1 (216-244)||(45807084-45807112)
[»] scaffold0008 (2 HSPs)
scaffold0008 (203-280)||(35862-35939)
scaffold0008 (203-280)||(10367-10444)
[»] chr8 (4 HSPs)
chr8 (213-258)||(14164675-14164720)
chr8 (203-280)||(17032965-17033042)
chr8 (203-280)||(17563401-17563478)
chr8 (216-244)||(8996533-8996561)
[»] scaffold0778 (1 HSPs)
scaffold0778 (213-244)||(1451-1482)
[»] chr3 (3 HSPs)
chr3 (203-245)||(25807015-25807057)
chr3 (216-244)||(25894699-25894727)
chr3 (216-244)||(25911666-25911694)
[»] chr7 (1 HSPs)
chr7 (219-276)||(25090050-25090107)
[»] chr6 (2 HSPs)
chr6 (203-244)||(13204060-13204101)
chr6 (216-244)||(13405307-13405335)
[»] scaffold1390 (1 HSPs)
scaffold1390 (216-244)||(625-653)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 21 - 280
Target Start/End: Complemental strand, 11483192 - 11482935
Alignment:
Q  21 gtgccacgatcccactaccaagagagctatcacgcaacatccgtgaaaattttccgaataggggttatgcacgatacaccatgttgtttggctaaaatgc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| |||||||| ||||    
T  11483192 gtgccacgatcccactaccaagagagctatcacgcaacatccgtgaaaattatccgaataggggttatgcacggtacgccatgttgattggctaatatgc 11483093  T
Q  121 aatagtcaaactataattacattcaggggcggagccctgcatgggatgggatgcgtcacagccc-ctcagnnnnnnnnnnnnnttaacgaccgtatgtct 219  Q
    |||||||||||||||||||||||| |||||||||   ||||||||||||| |||||||| |||| | |||             |||||||||||||||||    
T  11483092 aatagtcaaactataattacattcgggggcggag---tgcatgggatggggtgcgtcacggcccacccagaaaaataaaaaaattaacgaccgtatgtct 11482996  T
Q  220 attttgcgagattttaaacaattttgatgcggttttagtgtccgacagatctaaatcccca 280  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11482995 attttgcgagattttaaacaattttgatgcggttttagagtccgacagatctaaatcccca 11482935  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 8263284 - 8263361
Alignment:
Q  203 ttaacgaccgtatgtctattttgcgagattttaaacaattttgatgcggttttagtgtccgacagatctaaatcccca 280  Q
    ||||||| |||| |||||||||| ||||||||||| ||||||| || ||||||||||| ||| |||||||||||||||    
T  8263284 ttaacgatcgtaggtctattttgtgagattttaaataattttgttgtggttttagtgttcgatagatctaaatcccca 8263361  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 258
Target Start/End: Original strand, 27640702 - 27640741
Alignment:
Q  219 tattttgcgagattttaaacaattttgatgcggttttagt 258  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  27640702 tattttgcgagattttaaacaattttgttgcggttttagt 27640741  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 11577007 - 11576887
Alignment:
Q  21 gtgccacgatcccactaccaagagagctatcacgcaacatccgtgaaaattttccgaataggggttatgcacgatacaccatgttgtttggctaaaatgc 120  Q
    |||||||||| |||||||| || ||| |||||||||||| ||| |||||||   |||||| |||||   |||| ||  ||| ||||||||||||| | |     
T  11577007 gtgccacgattccactaccgagggagttatcacgcaacacccgcgaaaattagacgaataagggttgcacacgttaggccacgttgtttggctaatagga 11576908  T
Q  121 aatagtcaaactataattacat 142  Q
    ||||||| |||||||| |||||    
T  11576907 aatagtc-aactataaatacat 11576887  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 49130287 - 49130348
Alignment:
Q  219 tattttgcgagattttaaacaattttgatgcggttttagtgtccgacagatctaaatcccca 280  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||    
T  49130287 tattttgcgagattttaaacaattttgttgcggttttagtgttcgacatatctaaattccca 49130348  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 216 - 275
Target Start/End: Original strand, 27324619 - 27324678
Alignment:
Q  216 gtctattttgcgagattttaaacaattttgatgcggttttagtgtccgacagatctaaat 275  Q
    ||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  27324619 gtctattttacgagattttaaacaattttgttgcggttttagtgttcgacatatctaaat 27324678  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 43060361 - 43060284
Alignment:
Q  203 ttaacgaccgtatgtctattttgcgagattttaaacaattttgatgcggttttagtgtccgacagatctaaatcccca 280  Q
    ||||||| |||| |||||||||||||||||||||||||||||| | |||||||||||  | ||  |||||||||||||    
T  43060361 ttaacgatcgtaggtctattttgcgagattttaaacaattttgctacggttttagtggtcaacgaatctaaatcccca 43060284  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 42225374 - 42225416
Alignment:
Q  216 gtctattttgcgagattttaaacaattttgatgcggttttagt 258  Q
    ||||||||||||||||||||||||||||||| || ||||||||    
T  42225374 gtctattttgcgagattttaaacaattttgaggcagttttagt 42225416  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 12882942 - 12882868
Alignment:
Q  206 acgaccgtatgtctattttgcgagattttaaacaattttgatgcggttttagtgtccgacagatctaaatcccca 280  Q
    ||||||||| || || ||||||| |||||||||||||||| | ||  |||||||| |  ||||||||||||||||    
T  12882942 acgaccgtaggtttaatttgcgaaattttaaacaattttgctacgaatttagtgttctgcagatctaaatcccca 12882868  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 15842039 - 15842114
Alignment:
Q  203 ttaacgaccgtatgtctattttgcgagattttaaacaattttgatgcggttttagtgtccgacagatctaaatcccca 280  Q
    |||||||| |||  |||||||| |||||||  ||||||||||  ||| |||||||||  |||||||||||||||||||    
T  15842039 ttaacgactgtagctctattttacgagatt--aaacaatttttttgcagttttagtgatcgacagatctaaatcccca 15842114  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 244
Target Start/End: Original strand, 45807084 - 45807112
Alignment:
Q  216 gtctattttgcgagattttaaacaatttt 244  Q
    |||||||||||||||||||||||||||||    
T  45807084 gtctattttgcgagattttaaacaatttt 45807112  T

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Target: scaffold0008 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 35862 - 35939
Alignment:
Q  203 ttaacgaccgtatgtctattttgcgagattttaaacaattttgatgcggttttagtgtccgacagatctaaatcccca 280  Q
    |||||||||||| ||||| || || |||||||| ||||||||||| || ||||||||| || ||| || |||||||||    
T  35862 ttaacgaccgtaggtctacttagcaagattttacacaattttgatacgattttagtgttcgccagttccaaatcccca 35939  T

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Target: scaffold0008; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 10367 - 10444
Alignment:
Q  203 ttaacgaccgtatgtctattttgcgagattttaaacaattttgatgcggttttagtgtccgacagatctaaatcccca 280  Q
    ||||| |||||| ||||| || ||||||||||| ||||||||| |  | ||||||||| || |||||| |||||||||    
T  10367 ttaacaaccgtaggtctacttagcgagattttacacaattttgttatgattttagtgttcggcagatccaaatcccca 10444  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 14164675 - 14164720
Alignment:
Q  213 tatgtctattttgcgagattttaaacaattttgatgcggttttagt 258  Q
    ||||| |||||||||||||||||||||||||||  |||||||||||    
T  14164675 tatgtttattttgcgagattttaaacaattttgcagcggttttagt 14164720  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 17033042 - 17032965
Alignment:
Q  203 ttaacgaccgtatgtctattttgcgagattttaaacaattttgatgcggttttagtgtccgacagatctaaatcccca 280  Q
    ||||| ||| || |||||||||  ||||||||||||||||||| |||||||||||  | ||| | |||||||||||||    
T  17033042 ttaacaaccataggtctattttatgagattttaaacaattttgctgcggttttagcattcgatatatctaaatcccca 17032965  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 17563478 - 17563401
Alignment:
Q  203 ttaacgaccgtatgtctattttgcgagattttaaacaattttgatgcggttttagtgtccgacagatctaaatcccca 280  Q
    ||||| ||| || |||||||||  ||||||||||||||||||| |||||||||||  | ||| | |||||||||||||    
T  17563478 ttaacaaccataggtctattttatgagattttaaacaattttgctgcggttttagcattcgatatatctaaatcccca 17563401  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 244
Target Start/End: Original strand, 8996533 - 8996561
Alignment:
Q  216 gtctattttgcgagattttaaacaatttt 244  Q
    |||||||||||||||||||||||||||||    
T  8996533 gtctattttgcgagattttaaacaatttt 8996561  T

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Target: scaffold0778 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 244
Target Start/End: Complemental strand, 1482 - 1451
Alignment:
Q  213 tatgtctattttgcgagattttaaacaatttt 244  Q
    ||||||||||||||||||||||||||||||||    
T  1482 tatgtctattttgcgagattttaaacaatttt 1451  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 25807015 - 25807057
Alignment:
Q  203 ttaacgaccgtatgtctattttgcgagattttaaacaattttg 245  Q
    ||||| |||||| |||||||| |||||||||||||||||||||    
T  25807015 ttaacaaccgtaggtctatttagcgagattttaaacaattttg 25807057  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 244
Target Start/End: Complemental strand, 25894727 - 25894699
Alignment:
Q  216 gtctattttgcgagattttaaacaatttt 244  Q
    |||||||||||||||||||||||||||||    
T  25894727 gtctattttgcgagattttaaacaatttt 25894699  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 244
Target Start/End: Complemental strand, 25911694 - 25911666
Alignment:
Q  216 gtctattttgcgagattttaaacaatttt 244  Q
    |||||||||||||||||||||||||||||    
T  25911694 gtctattttgcgagattttaaacaatttt 25911666  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 25090050 - 25090107
Alignment:
Q  219 tattttgcgagattttaaacaattttgatgcggttttagtgtccgacagatctaaatc 276  Q
    |||||||||||| | |||||||||||| ||| |||||||| | ||||| |||||||||    
T  25090050 tattttgcgagaatataaacaattttgctgctgttttagtattcgacatatctaaatc 25090107  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 13204060 - 13204101
Alignment:
Q  203 ttaacgaccgtatgtctattttgcgagattttaaacaatttt 244  Q
    ||||||||| ||| |||||||||| |||||||||||||||||    
T  13204060 ttaacgaccatatttctattttgctagattttaaacaatttt 13204101  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 244
Target Start/End: Complemental strand, 13405335 - 13405307
Alignment:
Q  216 gtctattttgcgagattttaaacaatttt 244  Q
    |||||||||||||||||||||||||||||    
T  13405335 gtctattttgcgagattttaaacaatttt 13405307  T

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Target: scaffold1390 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1390
Description:

Target: scaffold1390; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 244
Target Start/End: Original strand, 625 - 653
Alignment:
Q  216 gtctattttgcgagattttaaacaatttt 244  Q
    |||||||||||||||||||||||||||||    
T  625 gtctattttgcgagattttaaacaatttt 653  T

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